Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS00140

Experiment: McCas-formate glass attached

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS00130 and MMJJ_RS00135 are separated by 86 nucleotidesMMJJ_RS00135 and MMJJ_RS00140 are separated by 48 nucleotidesMMJJ_RS00140 and MMJJ_RS00145 are separated by 125 nucleotidesMMJJ_RS00145 and MMJJ_RS00150 overlap by 4 nucleotides MMJJ_RS00130: MMJJ_RS00130 - uroporphyrinogen-III C-methyltransferase, at 24,902 to 25,621 _RS00130 MMJJ_RS00135: MMJJ_RS00135 - FmdE family protein, at 25,708 to 26,286 _RS00135 MMJJ_RS00140: MMJJ_RS00140 - hypothetical protein, at 26,335 to 26,592 _RS00140 MMJJ_RS00145: MMJJ_RS00145 - aquaporin family protein, at 26,718 to 27,437 _RS00145 MMJJ_RS00150: MMJJ_RS00150 - DUF2180 family protein, at 27,434 to 27,649 _RS00150 Position (kb) 26 27Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 25.615 kb on + strandat 25.652 kb on - strandat 25.653 kb on + strandat 25.653 kb on + strandat 25.653 kb on + strandat 25.673 kb on - strandat 25.673 kb on - strandat 25.685 kb on - strandat 25.686 kb on + strandat 25.789 kb on - strand, within MMJJ_RS00135at 25.789 kb on - strand, within MMJJ_RS00135at 25.796 kb on - strand, within MMJJ_RS00135at 25.804 kb on - strand, within MMJJ_RS00135at 25.804 kb on - strand, within MMJJ_RS00135at 25.805 kb on + strand, within MMJJ_RS00135at 25.849 kb on + strand, within MMJJ_RS00135at 25.860 kb on - strand, within MMJJ_RS00135at 25.860 kb on - strand, within MMJJ_RS00135at 25.871 kb on - strand, within MMJJ_RS00135at 25.939 kb on - strand, within MMJJ_RS00135at 25.991 kb on + strand, within MMJJ_RS00135at 26.009 kb on - strand, within MMJJ_RS00135at 26.009 kb on - strand, within MMJJ_RS00135at 26.136 kb on + strand, within MMJJ_RS00135at 26.160 kb on - strand, within MMJJ_RS00135at 26.187 kb on - strand, within MMJJ_RS00135at 26.187 kb on - strand, within MMJJ_RS00135at 26.187 kb on - strand, within MMJJ_RS00135at 26.187 kb on - strand, within MMJJ_RS00135at 26.188 kb on + strand, within MMJJ_RS00135at 26.215 kb on + strand, within MMJJ_RS00135at 26.235 kb on - strandat 26.235 kb on - strandat 26.249 kb on - strandat 26.250 kb on + strandat 26.257 kb on + strandat 26.289 kb on + strandat 26.353 kb on - strandat 26.353 kb on - strandat 26.357 kb on - strandat 26.357 kb on - strandat 26.357 kb on - strandat 26.358 kb on + strandat 26.361 kb on - strand, within MMJJ_RS00140at 26.398 kb on - strand, within MMJJ_RS00140at 26.399 kb on + strand, within MMJJ_RS00140at 26.399 kb on + strand, within MMJJ_RS00140at 26.400 kb on - strand, within MMJJ_RS00140at 26.401 kb on + strand, within MMJJ_RS00140at 26.401 kb on + strand, within MMJJ_RS00140at 26.401 kb on + strand, within MMJJ_RS00140at 26.402 kb on - strand, within MMJJ_RS00140at 26.403 kb on + strand, within MMJJ_RS00140at 26.407 kb on - strand, within MMJJ_RS00140at 26.408 kb on + strand, within MMJJ_RS00140at 26.412 kb on - strand, within MMJJ_RS00140at 26.574 kb on + strandat 26.583 kb on - strandat 26.604 kb on - strandat 26.609 kb on + strandat 26.609 kb on + strandat 26.609 kb on + strandat 26.611 kb on - strandat 26.614 kb on - strandat 26.614 kb on - strandat 26.615 kb on + strandat 26.619 kb on + strandat 26.730 kb on - strandat 26.730 kb on - strandat 26.730 kb on - strandat 26.740 kb on - strandat 26.740 kb on - strandat 26.741 kb on + strandat 26.744 kb on - strandat 26.744 kb on - strandat 26.744 kb on - strandat 26.745 kb on + strandat 26.757 kb on - strandat 26.757 kb on - strandat 26.757 kb on - strandat 26.757 kb on - strandat 26.758 kb on + strandat 26.783 kb on - strandat 26.783 kb on - strandat 26.783 kb on - strandat 26.783 kb on - strandat 26.784 kb on + strandat 26.784 kb on + strandat 26.784 kb on + strandat 26.785 kb on - strandat 26.785 kb on - strandat 26.785 kb on - strandat 26.785 kb on - strandat 26.785 kb on - strandat 26.785 kb on - strandat 26.786 kb on + strandat 26.786 kb on + strandat 26.786 kb on + strandat 26.786 kb on + strandat 26.786 kb on + strandat 26.786 kb on + strandat 26.786 kb on + strandat 26.788 kb on + strandat 26.797 kb on - strand, within MMJJ_RS00145at 26.797 kb on - strand, within MMJJ_RS00145at 26.797 kb on - strand, within MMJJ_RS00145at 26.801 kb on + strand, within MMJJ_RS00145at 26.801 kb on + strand, within MMJJ_RS00145at 26.807 kb on - strand, within MMJJ_RS00145at 26.822 kb on - strand, within MMJJ_RS00145at 26.823 kb on + strand, within MMJJ_RS00145at 26.823 kb on + strand, within MMJJ_RS00145at 26.825 kb on - strand, within MMJJ_RS00145at 26.825 kb on - strand, within MMJJ_RS00145at 26.825 kb on - strand, within MMJJ_RS00145at 26.826 kb on + strand, within MMJJ_RS00145at 26.826 kb on + strand, within MMJJ_RS00145at 26.826 kb on + strand, within MMJJ_RS00145at 26.826 kb on + strand, within MMJJ_RS00145at 26.826 kb on + strand, within MMJJ_RS00145at 26.829 kb on - strand, within MMJJ_RS00145at 26.830 kb on + strand, within MMJJ_RS00145at 26.863 kb on + strand, within MMJJ_RS00145at 26.880 kb on + strand, within MMJJ_RS00145at 26.973 kb on - strand, within MMJJ_RS00145at 26.975 kb on - strand, within MMJJ_RS00145at 27.003 kb on + strand, within MMJJ_RS00145at 27.075 kb on - strand, within MMJJ_RS00145at 27.108 kb on - strand, within MMJJ_RS00145at 27.133 kb on + strand, within MMJJ_RS00145at 27.146 kb on - strand, within MMJJ_RS00145at 27.146 kb on - strand, within MMJJ_RS00145at 27.147 kb on + strand, within MMJJ_RS00145at 27.147 kb on + strand, within MMJJ_RS00145at 27.148 kb on - strand, within MMJJ_RS00145at 27.149 kb on + strand, within MMJJ_RS00145at 27.150 kb on - strand, within MMJJ_RS00145at 27.150 kb on - strand, within MMJJ_RS00145at 27.150 kb on - strand, within MMJJ_RS00145at 27.150 kb on - strand, within MMJJ_RS00145at 27.150 kb on - strand, within MMJJ_RS00145at 27.151 kb on + strand, within MMJJ_RS00145at 27.151 kb on + strand, within MMJJ_RS00145at 27.151 kb on + strand, within MMJJ_RS00145at 27.151 kb on + strand, within MMJJ_RS00145at 27.159 kb on + strand, within MMJJ_RS00145at 27.200 kb on - strand, within MMJJ_RS00145at 27.201 kb on + strand, within MMJJ_RS00145at 27.213 kb on + strand, within MMJJ_RS00145at 27.230 kb on - strand, within MMJJ_RS00145at 27.230 kb on - strand, within MMJJ_RS00145at 27.242 kb on - strand, within MMJJ_RS00145at 27.242 kb on - strand, within MMJJ_RS00145at 27.242 kb on - strand, within MMJJ_RS00145at 27.249 kb on - strand, within MMJJ_RS00145at 27.250 kb on + strand, within MMJJ_RS00145at 27.393 kb on + strandat 27.451 kb on - strandat 27.452 kb on + strandat 27.463 kb on + strand, within MMJJ_RS00150at 27.463 kb on + strand, within MMJJ_RS00150at 27.554 kb on - strand, within MMJJ_RS00150at 27.554 kb on - strand, within MMJJ_RS00150at 27.555 kb on + strand, within MMJJ_RS00150at 27.557 kb on - strand, within MMJJ_RS00150at 27.557 kb on - strand, within MMJJ_RS00150at 27.557 kb on - strand, within MMJJ_RS00150at 27.557 kb on - strand, within MMJJ_RS00150at 27.558 kb on + strand, within MMJJ_RS00150at 27.558 kb on + strand, within MMJJ_RS00150at 27.558 kb on + strand, within MMJJ_RS00150at 27.568 kb on - strand, within MMJJ_RS00150at 27.568 kb on - strand, within MMJJ_RS00150at 27.590 kb on - strand, within MMJJ_RS00150at 27.591 kb on + strand, within MMJJ_RS00150

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Per-strain Table

Position Strand Gene LocusTag Fraction McCas-formate glass attached
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25,615 + +1.3
25,652 - +0.5
25,653 + -0.4
25,653 + -2.4
25,653 + -0.1
25,673 - +0.2
25,673 - +1.2
25,685 - +0.6
25,686 + +1.1
25,789 - MMJJ_RS00135 0.14 +0.7
25,789 - MMJJ_RS00135 0.14 -0.1
25,796 - MMJJ_RS00135 0.15 -0.6
25,804 - MMJJ_RS00135 0.17 +0.4
25,804 - MMJJ_RS00135 0.17 -1.0
25,805 + MMJJ_RS00135 0.17 +0.0
25,849 + MMJJ_RS00135 0.24 -0.8
25,860 - MMJJ_RS00135 0.26 +0.2
25,860 - MMJJ_RS00135 0.26 +0.6
25,871 - MMJJ_RS00135 0.28 -0.9
25,939 - MMJJ_RS00135 0.40 -0.0
25,991 + MMJJ_RS00135 0.49 -0.4
26,009 - MMJJ_RS00135 0.52 +0.4
26,009 - MMJJ_RS00135 0.52 +2.2
26,136 + MMJJ_RS00135 0.74 -0.9
26,160 - MMJJ_RS00135 0.78 -0.4
26,187 - MMJJ_RS00135 0.83 -0.7
26,187 - MMJJ_RS00135 0.83 +0.6
26,187 - MMJJ_RS00135 0.83 +0.4
26,187 - MMJJ_RS00135 0.83 +0.5
26,188 + MMJJ_RS00135 0.83 +0.1
26,215 + MMJJ_RS00135 0.88 -1.1
26,235 - +0.7
26,235 - +0.0
26,249 - -0.8
26,250 + +0.3
26,257 + -0.0
26,289 + +0.0
26,353 - -0.0
26,353 - +0.3
26,357 - -0.7
26,357 - -0.6
26,357 - +0.1
26,358 + +0.5
26,361 - MMJJ_RS00140 0.10 -0.2
26,398 - MMJJ_RS00140 0.24 +0.2
26,399 + MMJJ_RS00140 0.25 -0.6
26,399 + MMJJ_RS00140 0.25 +0.4
26,400 - MMJJ_RS00140 0.25 +0.8
26,401 + MMJJ_RS00140 0.26 +0.5
26,401 + MMJJ_RS00140 0.26 +1.0
26,401 + MMJJ_RS00140 0.26 -0.2
26,402 - MMJJ_RS00140 0.26 -0.8
26,403 + MMJJ_RS00140 0.26 +0.1
26,407 - MMJJ_RS00140 0.28 -2.5
26,408 + MMJJ_RS00140 0.28 +0.4
26,412 - MMJJ_RS00140 0.30 -0.9
26,574 + -0.4
26,583 - -0.6
26,604 - +0.6
26,609 + -0.2
26,609 + +0.5
26,609 + -1.0
26,611 - -0.7
26,614 - +0.6
26,614 - -1.6
26,615 + -2.2
26,619 + +0.2
26,730 - +0.2
26,730 - +0.4
26,730 - +0.3
26,740 - -1.5
26,740 - +0.3
26,741 + -2.5
26,744 - +0.3
26,744 - +0.9
26,744 - -0.3
26,745 + +0.0
26,757 - +0.9
26,757 - +0.0
26,757 - +0.1
26,757 - -1.5
26,758 + +0.0
26,783 - +0.0
26,783 - -1.0
26,783 - -0.1
26,783 - -0.4
26,784 + +0.4
26,784 + -0.9
26,784 + -0.3
26,785 - +0.1
26,785 - +0.3
26,785 - +0.4
26,785 - -2.0
26,785 - -2.1
26,785 - +1.0
26,786 + +0.9
26,786 + -0.7
26,786 + +0.5
26,786 + -2.7
26,786 + +0.5
26,786 + +0.2
26,786 + -0.0
26,788 + -0.3
26,797 - MMJJ_RS00145 0.11 +0.5
26,797 - MMJJ_RS00145 0.11 +0.2
26,797 - MMJJ_RS00145 0.11 -0.8
26,801 + MMJJ_RS00145 0.12 +0.7
26,801 + MMJJ_RS00145 0.12 -0.2
26,807 - MMJJ_RS00145 0.12 +1.2
26,822 - MMJJ_RS00145 0.14 +0.2
26,823 + MMJJ_RS00145 0.15 +0.3
26,823 + MMJJ_RS00145 0.15 -0.6
26,825 - MMJJ_RS00145 0.15 -0.1
26,825 - MMJJ_RS00145 0.15 +0.4
26,825 - MMJJ_RS00145 0.15 +0.2
26,826 + MMJJ_RS00145 0.15 +1.2
26,826 + MMJJ_RS00145 0.15 +1.3
26,826 + MMJJ_RS00145 0.15 +0.4
26,826 + MMJJ_RS00145 0.15 -1.4
26,826 + MMJJ_RS00145 0.15 +0.5
26,829 - MMJJ_RS00145 0.15 +0.4
26,830 + MMJJ_RS00145 0.16 -0.8
26,863 + MMJJ_RS00145 0.20 -0.3
26,880 + MMJJ_RS00145 0.23 -0.2
26,973 - MMJJ_RS00145 0.35 -0.2
26,975 - MMJJ_RS00145 0.36 -0.1
27,003 + MMJJ_RS00145 0.40 +1.0
27,075 - MMJJ_RS00145 0.50 +1.0
27,108 - MMJJ_RS00145 0.54 +0.9
27,133 + MMJJ_RS00145 0.58 -3.0
27,146 - MMJJ_RS00145 0.59 +0.1
27,146 - MMJJ_RS00145 0.59 +0.4
27,147 + MMJJ_RS00145 0.60 -0.1
27,147 + MMJJ_RS00145 0.60 +0.2
27,148 - MMJJ_RS00145 0.60 -3.3
27,149 + MMJJ_RS00145 0.60 +0.8
27,150 - MMJJ_RS00145 0.60 -3.6
27,150 - MMJJ_RS00145 0.60 -0.0
27,150 - MMJJ_RS00145 0.60 +0.3
27,150 - MMJJ_RS00145 0.60 -2.7
27,150 - MMJJ_RS00145 0.60 -1.1
27,151 + MMJJ_RS00145 0.60 -1.8
27,151 + MMJJ_RS00145 0.60 +1.2
27,151 + MMJJ_RS00145 0.60 -4.0
27,151 + MMJJ_RS00145 0.60 -0.4
27,159 + MMJJ_RS00145 0.61 +0.5
27,200 - MMJJ_RS00145 0.67 +1.1
27,201 + MMJJ_RS00145 0.67 -0.5
27,213 + MMJJ_RS00145 0.69 +0.6
27,230 - MMJJ_RS00145 0.71 -1.2
27,230 - MMJJ_RS00145 0.71 -1.1
27,242 - MMJJ_RS00145 0.73 +1.7
27,242 - MMJJ_RS00145 0.73 -0.2
27,242 - MMJJ_RS00145 0.73 +0.0
27,249 - MMJJ_RS00145 0.74 -0.3
27,250 + MMJJ_RS00145 0.74 +2.3
27,393 + -0.1
27,451 - +0.1
27,452 + -1.1
27,463 + MMJJ_RS00150 0.13 -1.7
27,463 + MMJJ_RS00150 0.13 -0.8
27,554 - MMJJ_RS00150 0.56 -0.1
27,554 - MMJJ_RS00150 0.56 -0.8
27,555 + MMJJ_RS00150 0.56 +0.7
27,557 - MMJJ_RS00150 0.57 -3.4
27,557 - MMJJ_RS00150 0.57 +0.3
27,557 - MMJJ_RS00150 0.57 +0.5
27,557 - MMJJ_RS00150 0.57 +0.1
27,558 + MMJJ_RS00150 0.57 +0.1
27,558 + MMJJ_RS00150 0.57 -0.2
27,558 + MMJJ_RS00150 0.57 -2.0
27,568 - MMJJ_RS00150 0.62 -0.8
27,568 - MMJJ_RS00150 0.62 +1.3
27,590 - MMJJ_RS00150 0.72 +0.0
27,591 + MMJJ_RS00150 0.73 -1.0

Or see this region's nucleotide sequence