Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3239c

Experiment: 7H9 with Dodecyl Sulfate 0.02 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Dodecyl Sulfate 0.02 vol%
3,613,486	-		Rv3237c	0.76	-0.2
3,613,546	-		Rv3237c	0.88	+0.1
3,613,561	-				-0.9
3,613,603	+				+1.8
3,613,603	+				+1.0
3,613,603	+				+0.2
3,613,603	+				+0.0
3,613,636	+				+0.1
3,613,636	+				+0.4
3,613,669	+				-0.2
3,613,669	+				-1.3
3,613,670	-				-0.1
3,613,745	+		Rv3238c	0.11	-0.1
3,613,745	+		Rv3238c	0.11	-0.4
3,613,783	-		Rv3238c	0.16	-1.3
3,613,921	-		Rv3238c	0.35	-0.5
3,613,944	+		Rv3238c	0.38	-0.1
3,613,944	+		Rv3238c	0.38	-0.9
3,613,945	-		Rv3238c	0.38	+0.4
3,613,945	-		Rv3238c	0.38	-0.2
3,613,955	+		Rv3238c	0.40	+0.1
3,613,956	-		Rv3238c	0.40	-0.3
3,614,101	-		Rv3238c	0.59	+0.2
3,614,101	-		Rv3238c	0.59	-0.5
3,614,132	+		Rv3238c	0.64	-0.8
3,614,132	+		Rv3238c	0.64	-1.1
3,614,132	+		Rv3238c	0.64	+0.5
3,614,133	-		Rv3238c	0.64	-0.5
3,614,133	-		Rv3238c	0.64	+0.1
3,614,133	-		Rv3238c	0.64	+1.3
3,614,133	-		Rv3238c	0.64	+0.1
3,614,136	+		Rv3238c	0.64	-0.4
3,614,136	+		Rv3238c	0.64	-0.6
3,614,136	+		Rv3238c	0.64	-0.1
3,614,136	+		Rv3238c	0.64	-1.0
3,614,137	-		Rv3238c	0.64	+1.8
3,614,137	-		Rv3238c	0.64	+1.8
3,614,137	-		Rv3238c	0.64	-0.8
3,614,137	-		Rv3238c	0.64	-0.3
3,614,137	-		Rv3238c	0.64	-0.4
3,614,137	-		Rv3238c	0.64	+1.4
3,614,137	-		Rv3238c	0.64	+0.8
3,614,137	-		Rv3238c	0.64	-0.0
3,614,209	+		Rv3238c	0.74	-0.2
3,614,209	+		Rv3238c	0.74	-0.2
3,614,210	-		Rv3238c	0.74	-1.2
3,614,288	+		Rv3238c	0.85	+0.5
3,614,306	+		Rv3238c	0.87	-0.2
3,614,306	+		Rv3238c	0.87	-0.4
3,614,307	-		Rv3238c	0.87	+0.0
3,614,352	-				-1.1
3,614,352	-				-0.9
3,614,358	+				-0.7
3,614,359	-				-1.5
3,614,359	-				+1.4
3,614,399	-				-0.2
3,614,715	+				-0.1
3,614,716	-				+3.8
3,614,716	-				+1.8
3,614,781	+		Rv3239c	0.10	-0.0
3,614,816	-		Rv3239c	0.11	+1.8
3,614,830	+		Rv3239c	0.12	-0.4
3,614,830	+		Rv3239c	0.12	-0.7
3,614,831	-		Rv3239c	0.12	+1.8
3,614,831	-		Rv3239c	0.12	+0.6
3,614,831	-		Rv3239c	0.12	+0.1
3,614,979	+		Rv3239c	0.17	+0.0
3,614,980	-		Rv3239c	0.17	-0.4
3,614,983	-		Rv3239c	0.17	+0.7
3,615,032	-		Rv3239c	0.18	-0.8
3,615,061	+		Rv3239c	0.19	-0.2
3,615,067	+		Rv3239c	0.19	-1.7
3,615,067	+		Rv3239c	0.19	-0.4
3,615,067	+		Rv3239c	0.19	-0.3
3,615,068	-		Rv3239c	0.19	+0.4
3,615,073	+		Rv3239c	0.20	-0.5
3,615,234	+		Rv3239c	0.25	+0.3
3,615,453	+		Rv3239c	0.32	+0.6
3,615,513	+		Rv3239c	0.34	-0.9
3,615,514	-		Rv3239c	0.34	-0.3
3,615,519	+		Rv3239c	0.34	-0.3
3,615,520	-		Rv3239c	0.34	+0.7
3,615,520	-		Rv3239c	0.34	-0.9
3,615,609	-		Rv3239c	0.37	+0.8
3,615,738	+		Rv3239c	0.41	-0.7
3,615,738	+		Rv3239c	0.41	-0.1
3,615,801	+		Rv3239c	0.43	-1.3
3,615,852	-		Rv3239c	0.44	-1.2
3,615,852	-		Rv3239c	0.44	+0.0
3,615,856	-		Rv3239c	0.44	-0.2
3,615,946	+		Rv3239c	0.47	-0.2
3,615,947	-		Rv3239c	0.47	+1.8
3,615,982	+		Rv3239c	0.48	-0.2
3,616,060	-		Rv3239c	0.51	-0.2
3,616,203	-		Rv3239c	0.55	-0.8
3,616,253	+		Rv3239c	0.57	+0.4
3,616,254	-		Rv3239c	0.57	+0.8
3,616,287	-		Rv3239c	0.58	-0.1
3,616,287	-		Rv3239c	0.58	-0.0
3,616,385	-		Rv3239c	0.61	-1.8
3,616,385	-		Rv3239c	0.61	+0.5
3,616,522	+		Rv3239c	0.66	+0.9
3,616,523	-		Rv3239c	0.66	+2.8
3,616,672	+		Rv3239c	0.70	+0.1
3,616,684	+		Rv3239c	0.71	-0.3
3,616,684	+		Rv3239c	0.71	-0.1
3,616,684	+		Rv3239c	0.71	+0.4
3,616,684	+		Rv3239c	0.71	+1.3
3,616,685	-		Rv3239c	0.71	+0.2
3,616,685	-		Rv3239c	0.71	-0.9
3,616,693	+		Rv3239c	0.71	-0.1
3,616,693	+		Rv3239c	0.71	+1.1
3,616,694	-		Rv3239c	0.71	-0.9
3,616,714	+		Rv3239c	0.72	+0.2
3,616,720	+		Rv3239c	0.72	-0.3
3,616,720	+		Rv3239c	0.72	+0.1
3,617,058	+		Rv3239c	0.83	+0.2
3,617,059	-		Rv3239c	0.83	+0.5
3,617,059	-		Rv3239c	0.83	-0.3
3,617,217	+		Rv3239c	0.88	-0.4
3,617,396	+				-0.4
3,617,397	-				-0.7
3,617,398	+				+0.4
3,617,399	-				+0.5
3,617,399	-				+0.3
3,617,521	-				-0.2
3,617,659	+				-0.3
3,617,660	-				-0.8
3,617,677	-				-0.6
3,617,683	+				-0.5
3,617,760	-				-0.1