Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2287

Experiment: 7H9 with Dodecyl Sulfate 0.02 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Dodecyl Sulfate 0.02 vol%
2,558,870	+				+0.4
2,558,954	-		Rv2286c	0.11	-0.3
2,558,961	+		Rv2286c	0.12	-0.9
2,558,961	+		Rv2286c	0.12	-0.2
2,558,962	-		Rv2286c	0.12	-0.2
2,558,962	-		Rv2286c	0.12	+0.1
2,558,962	-		Rv2286c	0.12	-0.5
2,559,016	+		Rv2286c	0.20	+0.2
2,559,017	-		Rv2286c	0.20	-0.5
2,559,017	-		Rv2286c	0.20	+2.8
2,559,325	+		Rv2286c	0.65	-0.0
2,559,326	-		Rv2286c	0.65	-0.7
2,559,394	+		Rv2286c	0.75	-1.3
2,559,395	-		Rv2286c	0.75	-0.3
2,559,703	-				-0.5
2,560,163	+		Rv2287	0.28	+0.1
2,560,164	-		Rv2287	0.28	-0.6
2,560,286	-		Rv2287	0.36	+1.2
2,560,338	-		Rv2287	0.39	-0.2
2,560,471	+		Rv2287	0.47	+1.6
2,560,471	+		Rv2287	0.47	+0.3
2,560,471	+		Rv2287	0.47	+0.6
2,560,472	-		Rv2287	0.47	+0.1
2,560,472	-		Rv2287	0.47	-1.7
2,560,626	-		Rv2287	0.57	-1.1
2,560,691	+		Rv2287	0.61	-1.8
2,561,098	+		Rv2287	0.86	+0.7
2,561,193	-				-0.6
2,561,292	-				+1.5
2,561,703	+				-0.1
2,561,704	-				-0.1
2,561,715	+				+0.4
2,561,716	-				-0.0
2,561,727	+				+0.1
2,561,727	+				-1.6
2,561,727	+				+0.4
2,561,727	+				-0.5
2,561,849	-		Rv2289	0.22	+0.5
2,561,858	+		Rv2289	0.23	+0.4
2,561,903	+		Rv2289	0.29	-0.2
2,562,076	-		Rv2289	0.51	-0.3
2,562,076	-		Rv2289	0.51	-1.0
2,562,076	-		Rv2289	0.51	+0.2
2,562,132	+		Rv2289	0.58	-1.3
2,562,133	-		Rv2289	0.58	+1.4
2,562,178	+		Rv2289	0.64	-0.3
2,562,178	+		Rv2289	0.64	-0.3
2,562,179	-		Rv2289	0.64	+1.3
2,562,188	+		Rv2289	0.66	+1.4
2,562,188	+		Rv2289	0.66	-0.2
2,562,188	+		Rv2289	0.66	-0.6
2,562,189	-		Rv2289	0.66	+1.9
2,562,293	+		Rv2289	0.79	+1.0
2,562,294	-		Rv2289	0.79	-0.1
2,562,294	-		Rv2289	0.79	+0.5
2,562,294	-		Rv2289	0.79	+0.5