Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05745

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,070,763	+		MMJJ_RS05740	0.44	-5.6
1,070,772	-		MMJJ_RS05740	0.44	-1.7
1,070,773	+		MMJJ_RS05740	0.44	-0.2
1,070,804	+		MMJJ_RS05740	0.46	-1.1
1,070,816	+		MMJJ_RS05740	0.47	+1.0
1,070,825	+		MMJJ_RS05740	0.47	-0.1
1,070,825	+		MMJJ_RS05740	0.47	-3.4
1,070,866	-		MMJJ_RS05740	0.50	+0.5
1,070,871	-				+0.0
1,070,875	-		MMJJ_RS05740	0.50	-2.3
1,070,899	+		MMJJ_RS05740	0.52	-1.1
1,070,899	-		MMJJ_RS05740	0.52	-0.9
1,070,949	-		MMJJ_RS05740	0.55	+0.3
1,070,950	+		MMJJ_RS05740	0.55	-1.1
1,070,984	+		MMJJ_RS05740	0.57	-1.6
1,070,990	-		MMJJ_RS05740	0.57	-3.3
1,071,001	-		MMJJ_RS05740	0.58	+1.6
1,071,009	-		MMJJ_RS05740	0.58	-1.0
1,071,010	+		MMJJ_RS05740	0.58	-0.2
1,071,022	-		MMJJ_RS05740	0.59	+0.9
1,071,046	-		MMJJ_RS05740	0.60	-0.8
1,071,065	+		MMJJ_RS05740	0.62	-1.0
1,071,125	-		MMJJ_RS05740	0.65	-2.1
1,071,125	-		MMJJ_RS05740	0.65	-2.0
1,071,125	-		MMJJ_RS05740	0.65	-1.4
1,071,125	-		MMJJ_RS05740	0.65	-4.8
1,071,126	+		MMJJ_RS05740	0.65	+1.3
1,071,126	+		MMJJ_RS05740	0.65	-1.7
1,071,126	+		MMJJ_RS05740	0.65	-0.4
1,071,126	+		MMJJ_RS05740	0.65	-1.4
1,071,126	+		MMJJ_RS05740	0.65	-0.2
1,071,126	+		MMJJ_RS05740	0.65	-0.4
1,071,167	-		MMJJ_RS05740	0.68	+0.6
1,071,241	-		MMJJ_RS05740	0.72	+0.1
1,071,346	-		MMJJ_RS05740	0.78	-1.8
1,071,442	+		MMJJ_RS05740	0.84	-1.1
1,071,473	+		MMJJ_RS05740	0.86	-1.1
1,071,490	-		MMJJ_RS05740	0.87	-0.3
1,071,490	-		MMJJ_RS05740	0.87	-1.7
1,071,520	+		MMJJ_RS05740	0.89	+0.4
1,071,521	-		MMJJ_RS05740	0.89	+0.1
1,071,532	-		MMJJ_RS05740	0.89	-4.6
1,071,532	-		MMJJ_RS05740	0.89	+1.0
1,071,533	+				+3.8
1,071,533	+		MMJJ_RS05740	0.90	-1.0
1,071,566	+				-0.6
1,071,568	-				-4.5
1,071,584	-				-1.8
1,071,596	-				-1.6
1,071,597	+				-1.5
1,071,613	-				+0.2
1,071,613	-				-0.4
1,071,614	+				+1.8
1,071,619	-				-1.2
1,071,633	-				-1.2
1,071,633	-				-2.7
1,071,633	-				-3.9
1,071,634	+				+0.4
1,071,634	+				-1.4
1,071,634	+				-0.6
1,071,646	-				-1.4
1,071,647	+				-0.3
1,071,647	+				-1.0
1,071,648	-				-0.9
1,071,649	+				-0.6
1,071,654	-				+0.3
1,071,655	+				-0.9
1,071,655	+				+0.2
1,071,662	-				+0.2
1,071,676	-				-1.0
1,071,694	-				+0.3
1,071,694	-				-1.2
1,071,694	-				-1.2
1,071,694	-				-4.8
1,071,694	-				-4.2
1,071,694	-				+0.3
1,071,694	-				-1.3
1,071,695	+				-1.3
1,071,697	+				-0.5
1,071,709	+				-4.8
1,071,709	+				+0.7
1,071,769	-				-1.8
1,071,769	-				-5.2
1,071,770	+				-1.9
1,071,772	-				-2.7
1,071,776	-				-0.8
1,071,776	-				-3.3
1,071,776	-				-5.9
1,071,776	-				+0.3
1,071,786	-				-1.8
1,071,787	+				-4.4
1,071,829	-				-0.0
1,071,836	-				-1.6
1,071,928	-		MMJJ_RS05745	0.13	-2.4
1,071,999	-		MMJJ_RS05745	0.17	+0.6
1,071,999	-		MMJJ_RS05745	0.17	+0.4
1,072,000	+		MMJJ_RS05745	0.17	-0.3
1,072,000	+		MMJJ_RS05745	0.17	-5.5
1,072,000	+		MMJJ_RS05745	0.17	-1.3
1,072,003	+		MMJJ_RS05745	0.17	-0.7
1,072,085	-		MMJJ_RS05745	0.22	+0.5
1,072,111	-		MMJJ_RS05745	0.24	-0.4
1,072,111	-		MMJJ_RS05745	0.24	-0.7
1,072,111	-		MMJJ_RS05745	0.24	-3.0
1,072,111	-		MMJJ_RS05745	0.24	-1.3
1,072,112	+		MMJJ_RS05745	0.24	-2.3
1,072,139	-		MMJJ_RS05745	0.26	-1.2
1,072,247	+		MMJJ_RS05745	0.32	-0.4
1,072,252	+		MMJJ_RS05745	0.32	-0.4
1,072,268	-		MMJJ_RS05745	0.33	+0.2
1,072,293	+		MMJJ_RS05745	0.35	-0.8
1,072,335	+		MMJJ_RS05745	0.38	-2.6
1,072,474	-		MMJJ_RS05745	0.46	-0.6
1,072,474	-		MMJJ_RS05745	0.46	-0.5
1,072,475	+		MMJJ_RS05745	0.46	+0.3
1,072,506	-		MMJJ_RS05745	0.48	-0.9
1,072,507	+		MMJJ_RS05745	0.48	-4.9
1,072,531	-		MMJJ_RS05745	0.49	-0.1
1,072,559	-		MMJJ_RS05745	0.51	-0.8
1,072,574	+		MMJJ_RS05745	0.52	-0.7
1,072,588	-		MMJJ_RS05745	0.53	-1.0
1,072,589	+		MMJJ_RS05745	0.53	+0.3
1,072,604	-		MMJJ_RS05745	0.54	-4.3
1,072,605	+		MMJJ_RS05745	0.54	+0.4
1,072,664	-		MMJJ_RS05745	0.58	-0.7
1,072,665	+		MMJJ_RS05745	0.58	-0.2
1,072,665	+		MMJJ_RS05745	0.58	-5.4
1,072,665	+		MMJJ_RS05745	0.58	-4.5
1,072,665	+		MMJJ_RS05745	0.58	-0.6
1,072,711	-		MMJJ_RS05745	0.60	-4.6
1,072,712	+		MMJJ_RS05745	0.61	+0.6
1,072,722	-		MMJJ_RS05745	0.61	-1.5
1,072,776	-		MMJJ_RS05745	0.64	-0.2
1,072,834	+		MMJJ_RS05745	0.68	-5.8
1,072,834	+		MMJJ_RS05745	0.68	-2.3
1,072,875	+		MMJJ_RS05745	0.70	-1.4
1,072,922	-		MMJJ_RS05745	0.73	+0.9
1,072,922	-		MMJJ_RS05745	0.73	-1.4
1,072,922	-		MMJJ_RS05745	0.73	-1.8
1,072,923	+		MMJJ_RS05745	0.73	-1.1
1,073,056	-		MMJJ_RS05745	0.81	+0.1
1,073,064	-		MMJJ_RS05745	0.82	+0.1
1,073,064	-		MMJJ_RS05745	0.82	-0.8
1,073,079	+		MMJJ_RS05745	0.83	+0.2
1,073,081	-		MMJJ_RS05745	0.83	-0.4
1,073,135	+		MMJJ_RS05745	0.86	-1.1
1,073,142	+		MMJJ_RS05745	0.87	-0.3
1,073,142	+		MMJJ_RS05745	0.87	-1.5
1,073,149	-		MMJJ_RS05745	0.87	-0.5
1,073,149	-		MMJJ_RS05745	0.87	+0.9
1,073,149	-		MMJJ_RS05745	0.87	-1.9
1,073,149	-		MMJJ_RS05745	0.87	+0.0
1,073,150	+		MMJJ_RS05745	0.87	-1.9
1,073,150	+		MMJJ_RS05745	0.87	-1.0
1,073,151	-		MMJJ_RS05745	0.87	-1.9
1,073,151	-		MMJJ_RS05745	0.87	+1.0
1,073,151	-		MMJJ_RS05745	0.87	-1.1
1,073,151	-		MMJJ_RS05745	0.87	-2.4
1,073,151	-		MMJJ_RS05745	0.87	-0.3
1,073,152	+		MMJJ_RS05745	0.87	-0.3
1,073,152	+		MMJJ_RS05745	0.87	-0.0
1,073,204	-				-1.8
1,073,204	-				-2.5
1,073,205	+				-0.1
1,073,212	+				-2.1
1,073,219	+				-5.5
1,073,231	-				-5.1
1,073,283	-				+0.1
1,073,315	-				+0.5
1,073,362	-				+0.5
1,073,370	-				-5.0
1,073,371	+				-1.3
1,073,376	+				+1.0
1,073,419	-				-5.1
1,073,420	+				-2.4
1,073,424	+				-0.3
1,073,424	+				+0.1
1,073,505	-		MMJJ_RS05750	0.20	-0.7
1,073,555	-		MMJJ_RS05750	0.27	-0.7
1,073,582	-		MMJJ_RS05750	0.31	-1.1
1,073,582	-		MMJJ_RS05750	0.31	-1.5
1,073,583	+		MMJJ_RS05750	0.31	-0.9
1,073,590	+		MMJJ_RS05750	0.32	-0.7
1,073,595	+		MMJJ_RS05750	0.33	-0.6
1,073,595	+		MMJJ_RS05750	0.33	-1.6
1,073,651	-		MMJJ_RS05750	0.41	+1.0
1,073,652	+		MMJJ_RS05750	0.41	-1.4
1,073,668	-		MMJJ_RS05750	0.43	+1.0
1,073,668	-		MMJJ_RS05750	0.43	-1.7
1,073,668	-		MMJJ_RS05750	0.43	-5.2
1,073,669	+		MMJJ_RS05750	0.43	-0.8
1,073,669	+		MMJJ_RS05750	0.43	+0.7
1,073,669	+		MMJJ_RS05750	0.43	-1.0
1,073,669	+		MMJJ_RS05750	0.43	-3.4
1,073,672	-		MMJJ_RS05750	0.44	-0.4
1,073,673	+		MMJJ_RS05750	0.44	-1.9
1,073,675	-		MMJJ_RS05750	0.44	+0.2
1,073,680	-		MMJJ_RS05750	0.45	-0.8
1,073,681	+		MMJJ_RS05750	0.45	-1.2
1,073,686	-		MMJJ_RS05750	0.46	-1.1
1,073,728	-		MMJJ_RS05750	0.52	-1.1
1,073,728	-		MMJJ_RS05750	0.52	-0.5
1,073,729	+		MMJJ_RS05750	0.52	-0.1
1,073,729	+		MMJJ_RS05750	0.52	-1.6
1,073,729	+		MMJJ_RS05750	0.52	-0.5
1,073,729	+		MMJJ_RS05750	0.52	-1.2
1,073,735	-		MMJJ_RS05750	0.53	-2.7
1,073,784	-		MMJJ_RS05750	0.60	-0.8
1,073,784	-		MMJJ_RS05750	0.60	-0.8
1,073,786	-		MMJJ_RS05750	0.60	+0.3
1,073,786	-		MMJJ_RS05750	0.60	-1.4
1,073,787	+		MMJJ_RS05750	0.60	-1.0
1,073,807	+		MMJJ_RS05750	0.63	-0.2
1,073,825	+		MMJJ_RS05750	0.66	+0.9
1,073,828	-		MMJJ_RS05750	0.66	-0.6
1,073,835	-		MMJJ_RS05750	0.67	-1.4
1,073,836	+		MMJJ_RS05750	0.67	-0.9
1,073,888	-		MMJJ_RS05750	0.75	-0.6
1,073,888	-		MMJJ_RS05750	0.75	-0.2
1,073,888	-		MMJJ_RS05750	0.75	-5.0
1,073,889	+		MMJJ_RS05750	0.75	-0.3
1,073,892	-		MMJJ_RS05750	0.75	-0.1
1,073,892	-		MMJJ_RS05750	0.75	-0.2
1,073,893	+		MMJJ_RS05750	0.76	-0.5
1,073,893	+		MMJJ_RS05750	0.76	+0.1
1,073,893	+		MMJJ_RS05750	0.76	-1.1
1,073,979	+		MMJJ_RS05750	0.88	-1.1
1,074,044	-				-0.8
1,074,078	-				-2.2
1,074,078	-				-0.4
1,074,079	+				-0.4
1,074,079	+				-0.2
1,074,103	-				-1.0
1,074,104	+				-4.2
1,074,107	-				-1.4
1,074,131	-		MMJJ_RS05755	0.12	-5.4
1,074,131	-		MMJJ_RS05755	0.12	-0.7
1,074,160	-		MMJJ_RS05755	0.18	-0.9
1,074,191	-		MMJJ_RS05755	0.25	-1.7
1,074,191	-		MMJJ_RS05755	0.25	-0.6
1,074,191	-		MMJJ_RS05755	0.25	-1.8
1,074,192	+		MMJJ_RS05755	0.25	-1.1
1,074,192	+		MMJJ_RS05755	0.25	-0.2
1,074,212	-		MMJJ_RS05755	0.30	-1.5
1,074,233	+		MMJJ_RS05755	0.34	-1.0
1,074,252	+		MMJJ_RS05755	0.39	-0.4
1,074,252	+		MMJJ_RS05755	0.39	-0.2
1,074,252	+		MMJJ_RS05755	0.39	+0.5
1,074,254	-		MMJJ_RS05755	0.39	-0.9
1,074,255	+		MMJJ_RS05755	0.39	-1.2
1,074,255	+		MMJJ_RS05755	0.39	-1.5
1,074,255	+		MMJJ_RS05755	0.39	-2.1
1,074,268	-		MMJJ_RS05755	0.42	-1.1
1,074,269	+		MMJJ_RS05755	0.42	-1.2
1,074,269	+		MMJJ_RS05755	0.42	-0.1
1,074,310	-		MMJJ_RS05755	0.51	+0.0
1,074,310	-		MMJJ_RS05755	0.51	-2.2
1,074,310	-		MMJJ_RS05755	0.51	-1.0
1,074,312	-		MMJJ_RS05755	0.52	-1.2
1,074,312	-		MMJJ_RS05755	0.52	-1.4
1,074,312	-		MMJJ_RS05755	0.52	-0.0
1,074,312	-		MMJJ_RS05755	0.52	-0.2
1,074,313	+		MMJJ_RS05755	0.52	-1.3
1,074,313	+		MMJJ_RS05755	0.52	-2.2
1,074,313	+		MMJJ_RS05755	0.52	-1.5
1,074,313	+		MMJJ_RS05755	0.52	-5.5
1,074,314	-		MMJJ_RS05755	0.52	-0.7
1,074,314	-		MMJJ_RS05755	0.52	-2.8
1,074,315	+		MMJJ_RS05755	0.53	-0.3
1,074,315	+		MMJJ_RS05755	0.53	-4.6
1,074,315	+		MMJJ_RS05755	0.53	-0.7
1,074,315	+		MMJJ_RS05755	0.53	-1.2
1,074,315	+		MMJJ_RS05755	0.53	-1.6
1,074,315	+		MMJJ_RS05755	0.53	-1.6
1,074,315	+		MMJJ_RS05755	0.53	-3.2
1,074,319	-		MMJJ_RS05755	0.53	+0.5
1,074,319	-		MMJJ_RS05755	0.53	-0.3
1,074,319	-		MMJJ_RS05755	0.53	-0.4
1,074,319	-		MMJJ_RS05755	0.53	-0.5
1,074,320	+		MMJJ_RS05755	0.54	-2.6
1,074,320	+		MMJJ_RS05755	0.54	-4.9
1,074,320	+		MMJJ_RS05755	0.54	-2.7
1,074,320	+		MMJJ_RS05755	0.54	-1.1
1,074,323	-		MMJJ_RS05755	0.54	-1.7