Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05720

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,065,070	+		MMJJ_RS05715	0.32	+0.9
1,065,096	-		MMJJ_RS05715	0.34	+0.3
1,065,123	-		MMJJ_RS05715	0.36	-0.4
1,065,129	+		MMJJ_RS05715	0.36	+1.7
1,065,134	+		MMJJ_RS05715	0.37	+0.6
1,065,141	+		MMJJ_RS05715	0.37	-0.7
1,065,265	-		MMJJ_RS05715	0.47	+0.2
1,065,266	+		MMJJ_RS05715	0.47	-0.3
1,065,341	-		MMJJ_RS05715	0.53	+0.4
1,065,387	-		MMJJ_RS05715	0.56	+1.2
1,065,466	-		MMJJ_RS05715	0.62	+0.5
1,065,471	-		MMJJ_RS05715	0.63	-0.2
1,065,488	-		MMJJ_RS05715	0.64	-0.7
1,065,493	+		MMJJ_RS05715	0.64	-0.2
1,065,493	+		MMJJ_RS05715	0.64	+0.5
1,065,523	-		MMJJ_RS05715	0.67	-4.0
1,065,657	+		MMJJ_RS05715	0.77	-0.2
1,065,660	-		MMJJ_RS05715	0.77	-0.7
1,065,661	+		MMJJ_RS05715	0.78	+0.1
1,065,676	-		MMJJ_RS05715	0.79	-0.6
1,065,677	+		MMJJ_RS05715	0.79	+0.5
1,065,677	+		MMJJ_RS05715	0.79	-1.1
1,065,677	+		MMJJ_RS05715	0.79	-0.4
1,065,677	+		MMJJ_RS05715	0.79	+0.6
1,065,678	-		MMJJ_RS05715	0.79	-3.5
1,065,678	-		MMJJ_RS05715	0.79	-0.8
1,065,678	-		MMJJ_RS05715	0.79	-3.4
1,065,678	-		MMJJ_RS05715	0.79	+0.2
1,065,678	-		MMJJ_RS05715	0.79	-0.0
1,065,679	+		MMJJ_RS05715	0.79	+0.8
1,065,679	+		MMJJ_RS05715	0.79	-0.4
1,065,679	+		MMJJ_RS05715	0.79	+0.2
1,065,680	-		MMJJ_RS05715	0.79	-2.2
1,065,680	-		MMJJ_RS05715	0.79	+0.5
1,065,680	-		MMJJ_RS05715	0.79	+0.6
1,065,680	-		MMJJ_RS05715	0.79	-3.1
1,065,680	-		MMJJ_RS05715	0.79	-0.8
1,065,681	+		MMJJ_RS05715	0.79	+0.0
1,065,681	+		MMJJ_RS05715	0.79	-2.5
1,065,681	+		MMJJ_RS05715	0.79	+0.5
1,065,681	+		MMJJ_RS05715	0.79	-0.1
1,065,681	+		MMJJ_RS05715	0.79	+0.1
1,065,681	+		MMJJ_RS05715	0.79	+0.6
1,065,681	+		MMJJ_RS05715	0.79	-1.2
1,065,681	+		MMJJ_RS05715	0.79	-0.9
1,065,682	-		MMJJ_RS05715	0.79	+0.5
1,065,692	-		MMJJ_RS05715	0.80	+0.6
1,065,692	-		MMJJ_RS05715	0.80	+1.7
1,065,693	+		MMJJ_RS05715	0.80	+0.5
1,065,763	+		MMJJ_RS05715	0.85	+0.1
1,065,774	+		MMJJ_RS05715	0.86	-3.2
1,065,804	+		MMJJ_RS05715	0.89	-0.5
1,065,804	+		MMJJ_RS05715	0.89	-2.9
1,065,804	+		MMJJ_RS05715	0.89	+0.2
1,065,809	+		MMJJ_RS05715	0.89	-4.9
1,065,815	-		MMJJ_RS05715	0.90	-1.6
1,065,879	-				+0.1
1,065,895	-				+1.0
1,065,903	-				+0.0
1,065,903	-				+0.4
1,065,903	-				-6.0
1,065,903	-				+0.9
1,065,904	+				+1.2
1,065,904	+				-0.0
1,065,937	-				+0.8
1,066,063	+				-0.5
1,066,782	-		MMJJ_RS05720	0.47	-1.0
1,066,846	-		MMJJ_RS05720	0.51	-2.8
1,066,847	+		MMJJ_RS05720	0.51	-1.5
1,066,849	+				+4.5
1,067,172	-		MMJJ_RS05720	0.69	-3.5
1,067,294	-		MMJJ_RS05720	0.75	-2.0
1,067,311	+		MMJJ_RS05720	0.76	-1.1
1,067,412	-		MMJJ_RS05720	0.82	-3.0
1,067,780	+				+0.0
1,067,781	-				-2.9
1,067,782	+				+0.2
1,067,782	+				-0.5
1,067,783	-				-4.2
1,067,783	-				+2.6
1,067,784	+				-3.5
1,067,784	+				+0.6
1,067,784	+				-4.0
1,067,787	+				+0.8
1,067,788	-				-2.0
1,067,789	+				-3.4
1,067,801	-				+0.5
1,067,803	-				-0.9
1,067,803	-				-1.7
1,067,804	+				+0.3
1,067,804	+				-0.8
1,067,804	+				+0.3
1,067,804	+				+0.3
1,067,804	+				-2.3
1,067,804	+				+0.1
1,067,804	+				+0.7
1,067,807	-				-1.7
1,067,807	-				+0.4
1,067,807	-				-3.2
1,067,808	+				+0.9
1,067,808	+				-2.9
1,067,808	+				+0.1
1,067,808	+				+1.4
1,067,810	-				+0.7
1,067,811	+				+0.2
1,067,811	+				+1.1
1,067,813	-				-2.0
1,067,813	-				-2.1
1,067,813	-				-4.0
1,067,814	+				-1.0
1,067,814	+				+0.2
1,067,817	-				-1.0
1,067,827	-				+0.2
1,067,827	-				-3.3
1,067,841	-				-2.7
1,067,862	-				+0.7
1,067,863	+				-0.5
1,067,899	-		MMJJ_RS05725	0.12	-1.9
1,067,899	-		MMJJ_RS05725	0.12	+0.1
1,067,904	+		MMJJ_RS05725	0.13	-2.4
1,067,904	+		MMJJ_RS05725	0.13	+0.3
1,067,941	-		MMJJ_RS05725	0.22	+0.1
1,067,942	+		MMJJ_RS05725	0.22	-4.5
1,067,942	+		MMJJ_RS05725	0.22	-3.2
1,067,942	+		MMJJ_RS05725	0.22	-0.4
1,067,984	+		MMJJ_RS05725	0.32	+0.3
1,067,991	-		MMJJ_RS05725	0.33	-2.8
1,067,992	+		MMJJ_RS05725	0.33	-4.6
1,067,992	+		MMJJ_RS05725	0.33	-3.4
1,068,019	-		MMJJ_RS05725	0.39	+0.0
1,068,019	-		MMJJ_RS05725	0.39	+1.0
1,068,020	+		MMJJ_RS05725	0.40	+0.9
1,068,020	+		MMJJ_RS05725	0.40	-2.7
1,068,020	+		MMJJ_RS05725	0.40	-0.7
1,068,041	+		MMJJ_RS05725	0.45	-2.2
1,068,041	+		MMJJ_RS05725	0.45	+3.8
1,068,048	-		MMJJ_RS05725	0.46	-3.5
1,068,048	-		MMJJ_RS05725	0.46	-1.7
1,068,055	+		MMJJ_RS05725	0.48	+1.4
1,068,070	-		MMJJ_RS05725	0.51	+0.1
1,068,078	-		MMJJ_RS05725	0.53	-0.8
1,068,079	+		MMJJ_RS05725	0.53	-2.0
1,068,079	+		MMJJ_RS05725	0.53	+1.5
1,068,089	+		MMJJ_RS05725	0.55	-0.7
1,068,108	-		MMJJ_RS05725	0.60	+0.5
1,068,144	-		MMJJ_RS05725	0.68	-3.4
1,068,144	-		MMJJ_RS05725	0.68	+1.7
1,068,144	-		MMJJ_RS05725	0.68	+0.3
1,068,158	-				-0.3
1,068,159	+		MMJJ_RS05725	0.71	-3.8
1,068,165	-		MMJJ_RS05725	0.73	-5.0
1,068,165	-		MMJJ_RS05725	0.73	+0.5
1,068,165	-		MMJJ_RS05725	0.73	-3.2
1,068,165	-		MMJJ_RS05725	0.73	-4.4
1,068,166	+		MMJJ_RS05725	0.73	-0.6
1,068,166	+		MMJJ_RS05725	0.73	-1.2
1,068,166	+		MMJJ_RS05725	0.73	-2.0
1,068,194	-		MMJJ_RS05725	0.79	-1.8
1,068,194	-		MMJJ_RS05725	0.79	-0.5
1,068,195	+		MMJJ_RS05725	0.80	+0.0
1,068,195	+		MMJJ_RS05725	0.80	-1.1
1,068,196	-		MMJJ_RS05725	0.80	+1.3
1,068,196	-		MMJJ_RS05725	0.80	+0.4
1,068,196	-		MMJJ_RS05725	0.80	-1.6
1,068,201	-		MMJJ_RS05725	0.81	+0.3
1,068,202	+		MMJJ_RS05725	0.81	+0.0
1,068,210	-		MMJJ_RS05725	0.83	-1.9
1,068,211	+		MMJJ_RS05725	0.83	+0.6
1,068,211	+		MMJJ_RS05725	0.83	-0.4
1,068,225	-		MMJJ_RS05725	0.87	-1.5
1,068,226	+		MMJJ_RS05725	0.87	-0.8
1,068,233	+		MMJJ_RS05725	0.88	-1.8
1,068,264	-				-0.5
1,068,289	+				+0.8
1,068,289	+				+0.3
1,068,290	-				-0.3
1,068,291	+				+0.7
1,068,301	+				+0.5
1,068,402	-		MMJJ_RS05730	0.14	+0.2
1,068,484	-		MMJJ_RS05730	0.24	+0.7
1,068,491	+		MMJJ_RS05730	0.25	+0.1
1,068,491	+		MMJJ_RS05730	0.25	+0.3
1,068,530	-		MMJJ_RS05730	0.30	+0.6
1,068,530	-		MMJJ_RS05730	0.30	+1.0
1,068,531	+		MMJJ_RS05730	0.30	-3.0
1,068,531	+		MMJJ_RS05730	0.30	-0.4
1,068,531	+		MMJJ_RS05730	0.30	+1.0
1,068,531	+		MMJJ_RS05730	0.30	-0.5
1,068,533	+		MMJJ_RS05730	0.30	+1.1
1,068,533	+		MMJJ_RS05730	0.30	-0.9
1,068,533	+		MMJJ_RS05730	0.30	+0.6
1,068,557	-		MMJJ_RS05730	0.33	+0.1
1,068,557	-		MMJJ_RS05730	0.33	+2.3
1,068,558	+		MMJJ_RS05730	0.33	-0.5
1,068,581	-		MMJJ_RS05730	0.36	+0.7
1,068,582	+		MMJJ_RS05730	0.36	-3.2
1,068,725	-		MMJJ_RS05730	0.53	+2.9