Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05495

Experiment: McCas-formate glass attached

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	McCas-formate glass attached
1,025,747	-				-1.1
1,025,858	-		MMJJ_RS05490	0.21	-0.8
1,025,977	+		MMJJ_RS05490	0.36	-2.5
1,026,093	-		MMJJ_RS05490	0.50	-2.0
1,026,097	-		MMJJ_RS05490	0.51	-0.3
1,026,252	-		MMJJ_RS05490	0.70	-0.5
1,026,253	+		MMJJ_RS05490	0.70	-0.8
1,026,271	+		MMJJ_RS05490	0.72	-1.5
1,026,283	+		MMJJ_RS05490	0.73	-1.4
1,026,565	+				+2.3
1,026,606	-				-3.3
1,026,633	+		MMJJ_RS05495	0.13	+0.9
1,026,655	-		MMJJ_RS05495	0.16	+0.5
1,026,659	-		MMJJ_RS05495	0.16	+0.5
1,026,660	+		MMJJ_RS05495	0.16	-5.9
1,026,660	+		MMJJ_RS05495	0.16	-0.2
1,026,660	+		MMJJ_RS05495	0.16	-2.4
1,026,664	-		MMJJ_RS05495	0.17	+0.3
1,026,664	-		MMJJ_RS05495	0.17	+1.1
1,026,664	-		MMJJ_RS05495	0.17	-0.8
1,026,664	-				-1.4
1,026,664	-		MMJJ_RS05495	0.17	+1.1
1,026,665	+		MMJJ_RS05495	0.17	+0.5
1,026,665	+		MMJJ_RS05495	0.17	-0.9
1,026,740	-		MMJJ_RS05495	0.26	+0.4
1,026,749	+		MMJJ_RS05495	0.28	+0.3
1,026,789	-		MMJJ_RS05495	0.33	+0.5
1,026,790	+				-0.3
1,026,790	+		MMJJ_RS05495	0.33	+0.7
1,026,832	-		MMJJ_RS05495	0.38	+0.6
1,026,832	-		MMJJ_RS05495	0.38	+0.0
1,026,833	+		MMJJ_RS05495	0.38	+1.3
1,026,833	+		MMJJ_RS05495	0.38	-0.8
1,026,864	-		MMJJ_RS05495	0.42	+0.7
1,026,916	-		MMJJ_RS05495	0.49	-3.1
1,026,986	+		MMJJ_RS05495	0.58	+0.2
1,026,998	-		MMJJ_RS05495	0.59	-2.6
1,027,003	+		MMJJ_RS05495	0.60	-0.7
1,027,044	-		MMJJ_RS05495	0.65	+0.4
1,027,054	+		MMJJ_RS05495	0.66	+0.4
1,027,111	-		MMJJ_RS05495	0.73	-1.1
1,027,111	-		MMJJ_RS05495	0.73	-4.7
1,027,111	-		MMJJ_RS05495	0.73	+0.5
1,027,114	-		MMJJ_RS05495	0.74	-0.2
1,027,115	+		MMJJ_RS05495	0.74	+1.1
1,027,115	+		MMJJ_RS05495	0.74	+0.9
1,027,116	-		MMJJ_RS05495	0.74	+1.0
1,027,117	+		MMJJ_RS05495	0.74	-5.2
1,027,117	+		MMJJ_RS05495	0.74	+0.4
1,027,117	+		MMJJ_RS05495	0.74	-5.0
1,027,159	+				-1.3
1,027,159	+		MMJJ_RS05495	0.79	-0.3
1,027,168	+		MMJJ_RS05495	0.81	-3.0
1,027,206	+		MMJJ_RS05495	0.85	+0.7
1,027,223	-		MMJJ_RS05495	0.88	-0.7
1,027,250	-				-0.4
1,027,251	+				-0.2
1,027,253	-				+0.5
1,027,297	-				-2.6
1,027,297	-				-1.5
1,027,297	-				-0.6
1,027,298	+				+0.9
1,027,298	+				-0.9
1,027,298	+				-0.5
1,027,298	+				-0.6
1,027,298	+				+1.0
1,027,298	+				-3.8
1,027,298	+				-0.1
1,027,298	+				-0.3
1,027,298	+				-0.6
1,027,304	-				+0.7
1,027,320	-				+0.7
1,027,321	+				+0.1
1,027,333	-				-3.5
1,027,333	-				+0.8
1,027,334	+				+0.7
1,027,337	-				-1.4
1,027,340	-				+1.2
1,027,340	-				-1.1
1,027,353	+				+0.5
1,027,353	+				+0.4
1,027,368	-				+0.0
1,027,368	-				+0.0
1,027,368	-				-0.1
1,027,368	-				+0.7
1,027,369	+				-0.2
1,027,393	-				-1.4
1,027,393	-				-2.7
1,027,393	-				+1.3
1,027,396	+				-3.2
1,027,417	+				-0.2
1,027,417	+				-5.5
1,027,427	-				-0.6
1,027,428	+				+0.5
1,027,428	+				-1.5
1,027,439	+				+0.9
1,027,475	+				+0.3
1,027,476	-				-1.2
1,027,477	+				+0.7
1,027,493	-				+1.3
1,027,494	+				-1.4
1,027,496	+				+0.7
1,027,497	-				-1.0
1,027,497	-				-3.8
1,027,498	+				+0.4
1,027,512	+		MMJJ_RS05500	0.10	-1.9
1,027,513	-		MMJJ_RS05500	0.10	+1.2
1,027,559	-		MMJJ_RS05500	0.13	+2.7
1,027,560	+		MMJJ_RS05500	0.13	+0.8
1,027,560	+		MMJJ_RS05500	0.13	-0.1
1,027,579	-		MMJJ_RS05500	0.14	+0.5
1,027,581	-		MMJJ_RS05500	0.14	+0.6
1,027,581	-		MMJJ_RS05500	0.14	+0.4
1,027,581	-		MMJJ_RS05500	0.14	+0.1
1,027,581	-		MMJJ_RS05500	0.14	+0.4
1,027,581	-		MMJJ_RS05500	0.14	-0.1
1,027,581	-		MMJJ_RS05500	0.14	+0.1
1,027,582	+		MMJJ_RS05500	0.14	-0.2
1,027,582	+		MMJJ_RS05500	0.14	+1.1
1,027,582	+		MMJJ_RS05500	0.14	-1.8
1,027,586	-		MMJJ_RS05500	0.14	-0.2
1,027,586	-		MMJJ_RS05500	0.14	+0.1
1,027,589	-		MMJJ_RS05500	0.14	-0.1
1,027,592	-		MMJJ_RS05500	0.14	+0.7
1,027,593	+		MMJJ_RS05500	0.15	+0.6
1,027,597	-		MMJJ_RS05500	0.15	+0.1
1,027,598	+		MMJJ_RS05500	0.15	+0.7
1,027,603	-		MMJJ_RS05500	0.15	-0.2
1,027,627	-		MMJJ_RS05500	0.16	+0.9
1,027,651	-		MMJJ_RS05500	0.18	-0.4
1,027,652	+		MMJJ_RS05500	0.18	+0.7
1,027,681	+		MMJJ_RS05500	0.19	-0.2
1,027,692	+		MMJJ_RS05500	0.20	-0.3
1,027,696	+		MMJJ_RS05500	0.20	-0.2
1,027,746	+		MMJJ_RS05500	0.23	-2.5
1,027,748	+		MMJJ_RS05500	0.23	-3.0
1,027,765	-		MMJJ_RS05500	0.24	-0.2
1,027,765	-		MMJJ_RS05500	0.24	+0.8
1,027,765	-		MMJJ_RS05500	0.24	+0.6
1,027,766	+		MMJJ_RS05500	0.24	-2.7
1,027,796	-		MMJJ_RS05500	0.26	-0.5
1,027,797	+		MMJJ_RS05500	0.26	-1.2
1,027,806	+		MMJJ_RS05500	0.26	-0.6
1,027,806	+		MMJJ_RS05500	0.26	+1.1
1,027,806	+		MMJJ_RS05500	0.26	-1.7
1,027,806	+		MMJJ_RS05500	0.26	+0.2
1,027,810	-		MMJJ_RS05500	0.27	+0.4
1,027,810	-		MMJJ_RS05500	0.27	-0.2
1,027,810	-		MMJJ_RS05500	0.27	+0.3
1,027,811	+		MMJJ_RS05500	0.27	-3.0
1,027,811	+		MMJJ_RS05500	0.27	+1.3
1,027,834	+		MMJJ_RS05500	0.28	+1.5
1,027,857	-		MMJJ_RS05500	0.29	-4.5
1,027,858	+		MMJJ_RS05500	0.29	-0.2
1,027,894	-		MMJJ_RS05500	0.31	+0.9
1,027,921	-		MMJJ_RS05500	0.33	-4.1
1,027,958	-		MMJJ_RS05500	0.35	-0.0
1,027,997	-		MMJJ_RS05500	0.37	+1.2
1,028,036	+		MMJJ_RS05500	0.39	+0.7
1,028,044	-		MMJJ_RS05500	0.40	+0.4
1,028,045	+		MMJJ_RS05500	0.40	-1.4
1,028,100	+		MMJJ_RS05500	0.43	-0.1
1,028,100	+		MMJJ_RS05500	0.43	+1.4
1,028,112	+		MMJJ_RS05500	0.43	+0.0
1,028,119	-		MMJJ_RS05500	0.44	+0.8
1,028,168	-		MMJJ_RS05500	0.47	-0.3
1,028,170	-		MMJJ_RS05500	0.47	-0.7
1,028,170	-		MMJJ_RS05500	0.47	+1.7
1,028,170	-		MMJJ_RS05500	0.47	+1.1
1,028,171	+		MMJJ_RS05500	0.47	+1.4
1,028,171	+		MMJJ_RS05500	0.47	-3.1
1,028,171	+		MMJJ_RS05500	0.47	+1.0
1,028,172	-		MMJJ_RS05500	0.47	+0.5
1,028,172	-		MMJJ_RS05500	0.47	+1.0
1,028,172	-		MMJJ_RS05500	0.47	+0.9
1,028,173	+		MMJJ_RS05500	0.47	+0.3
1,028,173	+		MMJJ_RS05500	0.47	+0.9
1,028,173	+		MMJJ_RS05500	0.47	-0.1
1,028,175	-		MMJJ_RS05500	0.47	-0.9
1,028,185	-		MMJJ_RS05500	0.48	-0.6
1,028,199	-		MMJJ_RS05500	0.48	-1.3
1,028,200	+		MMJJ_RS05500	0.48	+1.5
1,028,227	-		MMJJ_RS05500	0.50	-0.5
1,028,231	-		MMJJ_RS05500	0.50	-1.2
1,028,231	-		MMJJ_RS05500	0.50	+0.6
1,028,232	+		MMJJ_RS05500	0.50	+3.0
1,028,235	+		MMJJ_RS05500	0.50	-5.1
1,028,241	-		MMJJ_RS05500	0.51	-0.3