Experiment: McCas-formate glass attached
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS03770 and MMJJ_RS03775 are separated by 963 nucleotides MMJJ_RS03775 and MMJJ_RS03780 are separated by 226 nucleotides MMJJ_RS03780 and MMJJ_RS03785 are separated by 57 nucleotides
MMJJ_RS03770: MMJJ_RS03770 - hypothetical protein, at 701,843 to 702,091
_RS03770
MMJJ_RS03775: MMJJ_RS03775 - 50S ribosomal protein L15e, at 703,055 to 703,639
_RS03775
MMJJ_RS03780: MMJJ_RS03780 - translation initiation factor IF-2 subunit beta, at 703,866 to 704,282
_RS03780
MMJJ_RS03785: MMJJ_RS03785 - hypothetical protein, at 704,340 to 705,428
_RS03785
Position (kb) 703
704 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 702.094 kb on - strand at 702.095 kb on + strand at 702.107 kb on + strand at 702.125 kb on - strand at 702.126 kb on + strand at 702.136 kb on - strand at 702.136 kb on - strand at 702.149 kb on - strand at 702.149 kb on - strand at 702.150 kb on + strand at 702.150 kb on + strand at 702.152 kb on - strand at 702.153 kb on + strand at 702.153 kb on + strand at 702.157 kb on - strand at 702.158 kb on + strand at 702.176 kb on - strand at 702.177 kb on + strand at 702.180 kb on - strand at 702.184 kb on + strand at 702.184 kb on + strand at 702.196 kb on - strand at 702.209 kb on - strand at 702.209 kb on - strand at 702.209 kb on - strand at 702.209 kb on - strand at 702.210 kb on + strand at 702.210 kb on + strand at 702.210 kb on + strand at 702.210 kb on + strand at 702.211 kb on - strand at 702.211 kb on - strand at 702.211 kb on - strand at 702.211 kb on - strand at 702.211 kb on - strand at 702.211 kb on - strand at 702.211 kb on - strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.212 kb on + strand at 702.213 kb on - strand at 702.213 kb on - strand at 702.213 kb on - strand at 702.213 kb on - strand at 702.213 kb on - strand at 702.213 kb on - strand at 702.214 kb on + strand at 702.214 kb on + strand at 702.214 kb on + strand at 702.214 kb on + strand at 702.214 kb on + strand at 702.214 kb on + strand at 702.216 kb on - strand at 702.216 kb on - strand at 702.217 kb on + strand at 702.236 kb on - strand at 702.236 kb on - strand at 702.266 kb on - strand at 702.266 kb on - strand at 702.295 kb on - strand at 702.298 kb on + strand at 702.321 kb on - strand at 702.330 kb on + strand at 702.333 kb on + strand at 702.333 kb on + strand at 702.344 kb on - strand at 702.348 kb on + strand at 702.372 kb on - strand at 702.382 kb on - strand at 702.401 kb on + strand at 702.417 kb on - strand at 702.429 kb on - strand at 702.429 kb on - strand at 702.430 kb on + strand at 702.430 kb on + strand at 702.430 kb on + strand at 702.430 kb on + strand at 702.433 kb on - strand at 702.433 kb on - strand at 702.434 kb on + strand at 702.434 kb on + strand at 702.435 kb on - strand at 702.435 kb on - strand at 702.436 kb on + strand at 702.436 kb on + strand at 702.436 kb on + strand at 702.436 kb on + strand at 702.436 kb on + strand at 702.440 kb on - strand at 702.440 kb on - strand at 702.441 kb on + strand at 702.441 kb on + strand at 702.441 kb on + strand at 702.441 kb on + strand at 702.441 kb on + strand at 702.444 kb on - strand at 702.444 kb on - strand at 702.444 kb on - strand at 702.444 kb on - strand at 702.444 kb on - strand at 702.444 kb on - strand at 702.445 kb on + strand at 702.445 kb on + strand at 702.445 kb on + strand at 702.446 kb on - strand at 702.446 kb on - strand at 702.446 kb on - strand at 702.446 kb on - strand at 702.446 kb on - strand at 702.446 kb on - strand at 702.446 kb on - strand at 702.447 kb on + strand at 702.447 kb on + strand at 702.447 kb on + strand at 702.449 kb on - strand at 702.450 kb on + strand at 702.450 kb on + strand at 702.458 kb on - strand at 702.478 kb on - strand at 702.501 kb on + strand at 702.549 kb on - strand at 702.549 kb on - strand at 702.574 kb on - strand at 702.574 kb on - strand at 702.581 kb on - strand at 702.582 kb on + strand at 702.596 kb on - strand at 702.596 kb on - strand at 702.623 kb on + strand at 702.655 kb on + strand at 702.679 kb on + strand at 702.698 kb on - strand at 702.698 kb on - strand at 702.699 kb on + strand at 702.699 kb on + strand at 702.699 kb on + strand at 702.707 kb on - strand at 702.731 kb on - strand at 702.736 kb on + strand at 702.738 kb on - strand at 702.739 kb on + strand at 702.744 kb on + strand at 702.748 kb on - strand at 702.749 kb on + strand at 702.754 kb on - strand at 702.755 kb on + strand at 702.805 kb on - strand at 702.805 kb on - strand at 702.864 kb on - strand at 702.913 kb on - strand at 702.925 kb on + strand at 702.938 kb on - strand at 703.120 kb on + strand, within MMJJ_RS03775 at 703.120 kb on + strand, within MMJJ_RS03775 at 703.120 kb on + strand, within MMJJ_RS03775 at 703.120 kb on + strand, within MMJJ_RS03775 at 703.244 kb on - strand, within MMJJ_RS03775 at 703.245 kb on + strand, within MMJJ_RS03775 at 703.624 kb on + strand at 703.781 kb on - strand at 703.782 kb on + strand at 703.782 kb on + strand at 703.783 kb on - strand at 703.783 kb on - strand at 704.279 kb on + strand at 704.280 kb on - strand at 704.281 kb on + strand at 704.281 kb on + strand at 704.281 kb on + strand at 704.281 kb on + strand at 704.284 kb on - strand at 704.309 kb on + strand at 704.309 kb on + strand at 704.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction McCas-formate glass attached remove 702,094 - -1.4 702,095 + +0.4 702,107 + -0.2 702,125 - +0.1 702,126 + +0.5 702,136 - -0.5 702,136 - +1.4 702,149 - +1.1 702,149 - +0.6 702,150 + +0.3 702,150 + +1.9 702,152 - -1.3 702,153 + +1.0 702,153 + +1.1 702,157 - +1.1 702,158 + +0.6 702,176 - +0.2 702,177 + +0.3 702,180 - +1.1 702,184 + +0.3 702,184 + +0.3 702,196 - +0.0 702,209 - +0.4 702,209 - +0.9 702,209 - -0.2 702,209 - +0.3 702,210 + +0.7 702,210 + -2.8 702,210 + +1.0 702,210 + -0.3 702,211 - -1.4 702,211 - -0.3 702,211 - -4.3 702,211 - -0.3 702,211 - -1.3 702,211 - +0.3 702,211 - +0.1 702,212 + -2.6 702,212 + +0.2 702,212 + +0.7 702,212 + -0.6 702,212 + +0.1 702,212 + +0.4 702,212 + -1.0 702,212 + +0.0 702,213 - +0.0 702,213 - -0.1 702,213 - +0.4 702,213 - +1.0 702,213 - +0.0 702,213 - +0.1 702,214 + +0.7 702,214 + -0.2 702,214 + -0.0 702,214 + -0.1 702,214 + -0.3 702,214 + +0.1 702,216 - +3.1 702,216 - -4.5 702,217 + +0.3 702,236 - -0.2 702,236 - +0.4 702,266 - +0.5 702,266 - +1.1 702,295 - -0.3 702,298 + +0.3 702,321 - -0.4 702,330 + +0.3 702,333 + +0.6 702,333 + +0.1 702,344 - +1.5 702,348 + -0.6 702,372 - -0.1 702,382 - -0.7 702,401 + +0.5 702,417 - +2.6 702,429 - -0.9 702,429 - -1.1 702,430 + -2.6 702,430 + +1.3 702,430 + +2.1 702,430 + +0.8 702,433 - -0.2 702,433 - -3.2 702,434 + +0.0 702,434 + +1.1 702,435 - -0.4 702,435 - -1.0 702,436 + +1.4 702,436 + +2.2 702,436 + -1.4 702,436 + -0.2 702,436 + -3.6 702,440 - +1.2 702,440 - -0.4 702,441 + -0.1 702,441 + +0.1 702,441 + +0.1 702,441 + +1.5 702,441 + +0.3 702,444 - +0.2 702,444 - +0.7 702,444 - -2.9 702,444 - +1.4 702,444 - +0.7 702,444 - +1.1 702,445 + +0.2 702,445 + +0.5 702,445 + +1.1 702,446 - +0.3 702,446 - +1.4 702,446 - -0.5 702,446 - +0.1 702,446 - -0.6 702,446 - +0.8 702,446 - +0.1 702,447 + -1.7 702,447 + +0.9 702,447 + -0.8 702,449 - +0.1 702,450 + +1.2 702,450 + -0.0 702,458 - +0.9 702,478 - +0.6 702,501 + -1.9 702,549 - +0.4 702,549 - +1.6 702,574 - +0.8 702,574 - -6.7 702,581 - -0.0 702,582 + +0.4 702,596 - +0.2 702,596 - +0.4 702,623 + +1.0 702,655 + -0.9 702,679 + -1.7 702,698 - -6.0 702,698 - +0.4 702,699 + -0.1 702,699 + +0.2 702,699 + -0.1 702,707 - -3.4 702,731 - -1.4 702,736 + -1.6 702,738 - -0.0 702,739 + +0.4 702,744 + -0.2 702,748 - +1.5 702,749 + -0.5 702,754 - -0.4 702,755 + +0.5 702,805 - +0.4 702,805 - -0.0 702,864 - +1.4 702,913 - +0.4 702,925 + -0.6 702,938 - +0.6 703,120 + MMJJ_RS03775 0.11 -2.5 703,120 + MMJJ_RS03775 0.11 +0.3 703,120 + MMJJ_RS03775 0.11 -1.9 703,120 + MMJJ_RS03775 0.11 +0.6 703,244 - MMJJ_RS03775 0.32 -1.9 703,245 + MMJJ_RS03775 0.32 +0.2 703,624 + -1.2 703,781 - -3.2 703,782 + -3.1 703,782 + -1.6 703,783 - +0.6 703,783 - -1.7 704,279 + -3.8 704,280 - +0.2 704,281 + -0.3 704,281 + -1.1 704,281 + -0.4 704,281 + -2.1 704,284 - -3.0 704,309 + +0.5 704,309 + -3.5 704,313 + +0.0
Or see this region's nucleotide sequence