Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0798c

Experiment: 7H9 with Cetrimonium bromide 0.015 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0797 and Rv0798c overlap by 11 nucleotidesRv0798c and Rv0799c overlap by 4 nucleotides Rv0797: Rv0797 - Putative transposase for insertion sequence element IS1547, at 890,388 to 891,482 Rv0797 Rv0798c: Rv0798c - 29 KDa antigen CFP29, at 891,472 to 892,269 Rv0798c Rv0799c: Rv0799c - Conserved protein, at 892,266 to 893,273 Rv0799c Position (kb) 891 892 893Strain fitness (log2 ratio) -1 0 1at 891.453 kb on + strandat 891.598 kb on + strand, within Rv0798cat 891.737 kb on + strand, within Rv0798cat 891.914 kb on - strand, within Rv0798cat 892.024 kb on - strand, within Rv0798cat 892.507 kb on + strand, within Rv0799cat 892.507 kb on + strand, within Rv0799cat 892.606 kb on - strand, within Rv0799cat 892.726 kb on + strand, within Rv0799cat 892.726 kb on + strand, within Rv0799cat 892.744 kb on + strand, within Rv0799c

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with Cetrimonium bromide 0.015 vol%
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891,453 + -0.3
891,598 + Rv0798c 0.16 +0.0
891,737 + Rv0798c 0.33 -0.5
891,914 - Rv0798c 0.55 +1.7
892,024 - Rv0798c 0.69 +0.3
892,507 + Rv0799c 0.24 +0.7
892,507 + Rv0799c 0.24 -0.6
892,606 - Rv0799c 0.34 -0.3
892,726 + Rv0799c 0.46 -1.6
892,726 + Rv0799c 0.46 -0.2
892,744 + Rv0799c 0.47 -1.3

Or see this region's nucleotide sequence