Experiment: 7H9 with Cetrimonium bromide 0.015 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0107c and Rv0108c are separated by 353 nucleotides Rv0108c and Rv0109 are separated by 277 nucleotides Rv0109 and Rv0110 are separated by 147 nucleotides
Rv0107c: Rv0107c - Probable cation-transporter ATPase I CtpI, at 125,643 to 130,541
Rv0107c
Rv0108c: Rv0108c - Hypothetical protein, at 130,895 to 131,104
Rv0108c
Rv0109: Rv0109 - PE-PGRS family protein PE_PGRS1, at 131,382 to 132,872
Rv0109
Rv0110: Rv0110 - Probable conserved integral membrane protein, at 133,020 to 133,769
Rv0110
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 130.491 kb on + strand at 130.574 kb on - strand at 130.587 kb on + strand at 130.587 kb on + strand at 130.587 kb on + strand at 130.587 kb on + strand at 130.617 kb on - strand at 130.699 kb on + strand at 130.699 kb on + strand at 130.699 kb on + strand at 130.699 kb on + strand at 130.929 kb on + strand, within Rv0108c at 131.038 kb on - strand, within Rv0108c at 131.038 kb on - strand, within Rv0108c at 131.038 kb on - strand, within Rv0108c at 131.150 kb on - strand at 131.150 kb on - strand at 131.329 kb on - strand at 131.329 kb on - strand at 131.342 kb on - strand at 131.553 kb on + strand, within Rv0109 at 131.565 kb on + strand, within Rv0109 at 131.566 kb on - strand, within Rv0109 at 131.566 kb on - strand, within Rv0109 at 131.929 kb on + strand, within Rv0109 at 131.929 kb on + strand, within Rv0109 at 131.929 kb on + strand, within Rv0109 at 132.393 kb on - strand, within Rv0109 at 132.402 kb on - strand, within Rv0109 at 132.951 kb on + strand at 132.952 kb on - strand at 132.975 kb on + strand at 132.975 kb on + strand at 132.975 kb on + strand at 132.975 kb on + strand at 132.976 kb on - strand at 132.976 kb on - strand at 133.002 kb on + strand at 133.002 kb on + strand at 133.002 kb on + strand at 133.019 kb on + strand at 133.019 kb on + strand at 133.136 kb on + strand, within Rv0110 at 133.136 kb on + strand, within Rv0110 at 133.136 kb on + strand, within Rv0110 at 133.136 kb on + strand, within Rv0110 at 133.140 kb on + strand, within Rv0110 at 133.248 kb on + strand, within Rv0110 at 133.278 kb on + strand, within Rv0110 at 133.279 kb on - strand, within Rv0110 at 133.317 kb on + strand, within Rv0110 at 133.375 kb on - strand, within Rv0110 at 133.375 kb on - strand, within Rv0110 at 133.410 kb on + strand, within Rv0110 at 133.427 kb on + strand, within Rv0110 at 133.428 kb on - strand, within Rv0110 at 133.430 kb on + strand, within Rv0110 at 133.629 kb on + strand, within Rv0110 at 133.629 kb on + strand, within Rv0110 at 133.630 kb on - strand, within Rv0110 at 133.630 kb on - strand, within Rv0110 at 133.833 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Cetrimonium bromide 0.015 vol% remove 130,491 + +0.5 130,574 - +0.6 130,587 + +0.2 130,587 + -0.4 130,587 + +0.3 130,587 + +0.5 130,617 - +0.2 130,699 + +0.0 130,699 + +0.4 130,699 + +1.0 130,699 + +0.1 130,929 + Rv0108c 0.16 -0.1 131,038 - Rv0108c 0.68 -0.4 131,038 - Rv0108c 0.68 -1.4 131,038 - Rv0108c 0.68 -1.0 131,150 - +0.0 131,150 - -0.8 131,329 - +1.1 131,329 - -1.4 131,342 - -0.5 131,553 + Rv0109 0.11 -1.0 131,565 + Rv0109 0.12 +0.0 131,566 - Rv0109 0.12 +0.5 131,566 - Rv0109 0.12 -0.9 131,929 + Rv0109 0.37 +0.8 131,929 + Rv0109 0.37 -0.4 131,929 + Rv0109 0.37 +0.7 132,393 - Rv0109 0.68 -1.9 132,402 - Rv0109 0.68 +0.3 132,951 + -0.4 132,952 - -0.2 132,975 + +0.3 132,975 + +0.0 132,975 + +0.2 132,975 + +0.7 132,976 - -0.2 132,976 - -1.0 133,002 + -3.1 133,002 + -0.3 133,002 + +0.4 133,019 + -0.4 133,019 + +0.2 133,136 + Rv0110 0.15 +0.8 133,136 + Rv0110 0.15 -0.4 133,136 + Rv0110 0.15 +0.2 133,136 + Rv0110 0.15 -0.9 133,140 + Rv0110 0.16 -0.8 133,248 + Rv0110 0.30 +1.8 133,278 + Rv0110 0.34 -0.6 133,279 - Rv0110 0.35 -0.5 133,317 + Rv0110 0.40 -0.6 133,375 - Rv0110 0.47 -0.1 133,375 - Rv0110 0.47 -0.4 133,410 + Rv0110 0.52 +0.6 133,427 + Rv0110 0.54 -0.8 133,428 - Rv0110 0.54 +0.5 133,430 + Rv0110 0.55 -0.6 133,629 + Rv0110 0.81 -0.6 133,629 + Rv0110 0.81 +1.8 133,630 - Rv0110 0.81 -1.5 133,630 - Rv0110 0.81 +1.1 133,833 + -1.4
Or see this region's nucleotide sequence