Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0096

Experiment: 7H9 with Cetrimonium bromide 0.015 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Cetrimonium bromide 0.015 vol%
105,209	-				+0.2
105,320	-				-0.3
105,320	-				-0.4
105,329	+				+0.1
105,332	-				-0.3
105,416	+				+0.5
105,416	+				+4.1
105,507	+		Rv0096	0.13	-0.2
105,587	-		Rv0096	0.19	-0.3
105,603	+		Rv0096	0.20	+0.0
105,604	-		Rv0096	0.20	-1.0
105,774	+		Rv0096	0.32	-1.2
105,877	+		Rv0096	0.40	+0.2
105,878	-		Rv0096	0.40	+0.1
105,908	+		Rv0096	0.42	-0.3
106,038	+		Rv0096	0.51	+0.2
106,039	-		Rv0096	0.51	+0.2
106,323	+		Rv0096	0.72	+0.5
106,323	+		Rv0096	0.72	+1.9
106,323	+		Rv0096	0.72	-2.9
106,323	+		Rv0096	0.72	+0.7
106,323	+		Rv0096	0.72	+0.9
106,324	-		Rv0096	0.72	+0.8
106,355	+		Rv0096	0.74	+0.3
106,667	+				-0.0
106,667	+				+0.7
106,667	+				-0.2
106,667	+				+0.5
106,667	+				+0.1
106,667	+				+0.0
106,667	+				-0.5
106,668	-				-0.1
106,668	-				-1.3
106,668	-				+0.0
106,808	-				-0.0
106,808	-				+0.5
106,808	-				-0.7
106,859	-		Rv0097	0.14	-0.0
106,942	-		Rv0097	0.24	-1.8
107,034	-		Rv0097	0.34	-1.4
107,107	-		Rv0097	0.43	+0.8
107,107	-		Rv0097	0.43	-0.5
107,245	+		Rv0097	0.59	-0.6
107,245	+		Rv0097	0.59	+0.0
107,245	+		Rv0097	0.59	+0.3
107,246	-		Rv0097	0.59	+0.2
107,246	-		Rv0097	0.59	+0.1
107,329	-		Rv0097	0.68	+0.1
107,452	+		Rv0097	0.83	-1.2
107,452	+		Rv0097	0.83	-0.8
107,453	-		Rv0097	0.83	-1.2
107,453	-		Rv0097	0.83	-0.3
107,453	-		Rv0097	0.83	-0.4
107,453	-		Rv0097	0.83	-0.6
107,453	-		Rv0097	0.83	-0.1
107,453	-		Rv0097	0.83	-0.0
107,453	-		Rv0097	0.83	-1.8
107,456	+		Rv0097	0.83	+0.6
107,457	-		Rv0097	0.83	+0.1
107,457	-		Rv0097	0.83	-0.2