Experiment: 7H9 with Hydrogen peroxide 3.97 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0180c and Rv0181c are separated by 26 nucleotides Rv0181c and Rv0182c are separated by 16 nucleotides Rv0182c and Rv0183 overlap by 53 nucleotides Rv0183 and Rv0184 are separated by 41 nucleotides
Rv0180c: Rv0180c - Probable conserved transmembrane protein, at 210,892 to 212,250
Rv0180c
Rv0181c: Rv0181c - Conserved hypothetical protein, at 212,277 to 213,011
Rv0181c
Rv0182c: Rv0182c - Probable alternative RNA polymerase sigma factor SigG (RNA polymerase ECF type sigma factor), at 213,028 to 214,140
Rv0182c
Rv0183: Rv0183 - Possible lysophospholipase, at 214,088 to 214,927
Rv0183
Rv0184: Rv0184 - Conserved hypothetical protein, at 214,969 to 215,718
Rv0184
Position (kb) 213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 212.278 kb on + strand at 212.278 kb on + strand at 212.278 kb on + strand at 212.278 kb on + strand at 212.279 kb on - strand at 212.279 kb on - strand at 212.279 kb on - strand at 212.279 kb on - strand at 212.279 kb on - strand at 212.279 kb on - strand at 212.323 kb on - strand at 212.569 kb on - strand, within Rv0181c at 212.598 kb on + strand, within Rv0181c at 212.599 kb on - strand, within Rv0181c at 212.614 kb on + strand, within Rv0181c at 212.615 kb on - strand, within Rv0181c at 212.615 kb on - strand, within Rv0181c at 212.644 kb on - strand, within Rv0181c at 212.747 kb on - strand, within Rv0181c at 212.914 kb on + strand, within Rv0181c at 212.915 kb on - strand, within Rv0181c at 212.991 kb on + strand at 212.992 kb on - strand at 213.124 kb on + strand at 213.161 kb on + strand, within Rv0182c at 213.161 kb on + strand, within Rv0182c at 213.162 kb on - strand, within Rv0182c at 213.162 kb on - strand, within Rv0182c at 213.275 kb on + strand, within Rv0182c at 213.287 kb on + strand, within Rv0182c at 213.287 kb on + strand, within Rv0182c at 213.287 kb on + strand, within Rv0182c at 213.288 kb on - strand, within Rv0182c at 213.348 kb on - strand, within Rv0182c at 213.367 kb on - strand, within Rv0182c at 213.367 kb on - strand, within Rv0182c at 213.475 kb on - strand, within Rv0182c at 213.475 kb on - strand, within Rv0182c at 213.554 kb on - strand, within Rv0182c at 213.821 kb on - strand, within Rv0182c at 213.848 kb on + strand, within Rv0182c at 213.849 kb on - strand, within Rv0182c at 213.849 kb on - strand, within Rv0182c at 213.849 kb on - strand, within Rv0182c at 213.921 kb on - strand, within Rv0182c at 214.087 kb on - strand at 214.093 kb on + strand at 214.093 kb on + strand at 214.145 kb on + strand at 214.146 kb on - strand at 214.146 kb on - strand at 214.268 kb on + strand, within Rv0183 at 214.268 kb on + strand, within Rv0183 at 214.317 kb on + strand, within Rv0183 at 214.318 kb on - strand, within Rv0183 at 214.318 kb on - strand, within Rv0183 at 214.383 kb on - strand, within Rv0183 at 214.442 kb on + strand, within Rv0183 at 214.444 kb on - strand, within Rv0183 at 214.466 kb on + strand, within Rv0183 at 214.466 kb on + strand, within Rv0183 at 214.467 kb on - strand, within Rv0183 at 214.628 kb on + strand, within Rv0183 at 214.628 kb on + strand, within Rv0183 at 214.629 kb on - strand, within Rv0183 at 214.629 kb on - strand, within Rv0183 at 214.629 kb on - strand, within Rv0183 at 214.744 kb on - strand, within Rv0183 at 214.744 kb on - strand, within Rv0183
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 3.97 mM remove 212,278 + +0.0 212,278 + -0.1 212,278 + +0.3 212,278 + +0.4 212,279 - +1.6 212,279 - -1.4 212,279 - -0.8 212,279 - -0.8 212,279 - +1.9 212,279 - -0.9 212,323 - -0.4 212,569 - Rv0181c 0.40 -0.3 212,598 + Rv0181c 0.44 -0.6 212,599 - Rv0181c 0.44 -0.1 212,614 + Rv0181c 0.46 +2.0 212,615 - Rv0181c 0.46 -0.5 212,615 - Rv0181c 0.46 +0.1 212,644 - Rv0181c 0.50 +0.2 212,747 - Rv0181c 0.64 +0.7 212,914 + Rv0181c 0.87 +2.3 212,915 - Rv0181c 0.87 -1.3 212,991 + -0.3 212,992 - -0.0 213,124 + +0.1 213,161 + Rv0182c 0.12 -0.3 213,161 + Rv0182c 0.12 +2.0 213,162 - Rv0182c 0.12 +0.1 213,162 - Rv0182c 0.12 +0.1 213,275 + Rv0182c 0.22 +1.1 213,287 + Rv0182c 0.23 +1.4 213,287 + Rv0182c 0.23 -0.5 213,287 + Rv0182c 0.23 -0.1 213,288 - Rv0182c 0.23 +0.1 213,348 - Rv0182c 0.29 +0.4 213,367 - Rv0182c 0.30 +1.7 213,367 - Rv0182c 0.30 -0.7 213,475 - Rv0182c 0.40 +0.6 213,475 - Rv0182c 0.40 -0.3 213,554 - Rv0182c 0.47 -2.1 213,821 - Rv0182c 0.71 +0.0 213,848 + Rv0182c 0.74 +0.5 213,849 - Rv0182c 0.74 -0.7 213,849 - Rv0182c 0.74 +0.4 213,849 - Rv0182c 0.74 +0.2 213,921 - Rv0182c 0.80 +1.0 214,087 - -3.1 214,093 + -0.4 214,093 + +0.2 214,145 + -0.4 214,146 - -0.3 214,146 - +0.6 214,268 + Rv0183 0.21 +0.0 214,268 + Rv0183 0.21 -0.6 214,317 + Rv0183 0.27 -0.4 214,318 - Rv0183 0.27 -2.9 214,318 - Rv0183 0.27 -0.7 214,383 - Rv0183 0.35 -0.1 214,442 + Rv0183 0.42 +0.6 214,444 - Rv0183 0.42 -0.5 214,466 + Rv0183 0.45 -0.2 214,466 + Rv0183 0.45 -0.4 214,467 - Rv0183 0.45 +0.9 214,628 + Rv0183 0.64 -0.1 214,628 + Rv0183 0.64 -0.2 214,629 - Rv0183 0.64 -0.7 214,629 - Rv0183 0.64 +0.1 214,629 - Rv0183 0.64 -0.5 214,744 - Rv0183 0.78 -0.0 214,744 - Rv0183 0.78 +0.3
Or see this region's nucleotide sequence