Experiment: 7H9 with Hydrogen peroxide 3.97 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0407 and Rv0408 overlap by 8 nucleotides Rv0408 and Rv0409 overlap by 8 nucleotides
Rv0407: Rv0407 - F420-dependent glucose-6-phosphate dehydrogenase Fgd1, at 490,783 to 491,793
Rv0407
Rv0408: Rv0408 - Probable phosphate acetyltransferase Pta (phosphotransacetylase), at 491,786 to 493,858
Rv0408
Rv0409: Rv0409 - Probable acetate kinase AckA (acetokinase), at 493,851 to 495,008
Rv0409
Position (kb) 491
492
493
494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 490.799 kb on + strand at 490.804 kb on + strand at 490.804 kb on + strand at 490.805 kb on - strand at 490.805 kb on - strand at 491.196 kb on - strand, within Rv0407 at 491.245 kb on + strand, within Rv0407 at 491.300 kb on - strand, within Rv0407 at 491.390 kb on - strand, within Rv0407 at 491.486 kb on - strand, within Rv0407 at 491.673 kb on - strand, within Rv0407 at 491.680 kb on + strand, within Rv0407 at 491.681 kb on - strand, within Rv0407 at 491.681 kb on - strand, within Rv0407 at 491.982 kb on - strand at 492.359 kb on + strand, within Rv0408 at 492.360 kb on - strand, within Rv0408 at 492.435 kb on + strand, within Rv0408 at 492.869 kb on - strand, within Rv0408 at 492.888 kb on - strand, within Rv0408 at 493.356 kb on + strand, within Rv0408 at 493.357 kb on - strand, within Rv0408 at 493.364 kb on + strand, within Rv0408 at 493.700 kb on + strand at 493.806 kb on + strand at 493.807 kb on - strand at 494.287 kb on - strand, within Rv0409 at 494.358 kb on + strand, within Rv0409 at 494.359 kb on - strand, within Rv0409 at 494.359 kb on - strand, within Rv0409 at 494.557 kb on - strand, within Rv0409 at 494.666 kb on - strand, within Rv0409 at 494.745 kb on + strand, within Rv0409 at 494.852 kb on + strand, within Rv0409
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 3.97 mM remove 490,799 + +0.2 490,804 + +0.4 490,804 + -2.3 490,805 - -1.5 490,805 - +2.2 491,196 - Rv0407 0.41 -0.3 491,245 + Rv0407 0.46 -1.5 491,300 - Rv0407 0.51 -1.3 491,390 - Rv0407 0.60 -1.3 491,486 - Rv0407 0.70 +0.4 491,673 - Rv0407 0.88 -0.5 491,680 + Rv0407 0.89 +0.1 491,681 - Rv0407 0.89 -1.8 491,681 - Rv0407 0.89 -0.2 491,982 - -2.5 492,359 + Rv0408 0.28 -0.1 492,360 - Rv0408 0.28 +1.2 492,435 + Rv0408 0.31 -0.1 492,869 - Rv0408 0.52 -0.1 492,888 - Rv0408 0.53 +0.4 493,356 + Rv0408 0.76 -0.4 493,357 - Rv0408 0.76 +0.6 493,364 + Rv0408 0.76 +1.5 493,700 + -0.2 493,806 + -0.4 493,807 - +0.4 494,287 - Rv0409 0.38 -0.6 494,358 + Rv0409 0.44 -0.4 494,359 - Rv0409 0.44 +1.4 494,359 - Rv0409 0.44 -0.7 494,557 - Rv0409 0.61 -0.8 494,666 - Rv0409 0.70 -0.4 494,745 + Rv0409 0.77 -1.2 494,852 + Rv0409 0.86 +0.7
Or see this region's nucleotide sequence