Experiment: 7H9 with Menadione 0.005 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0805 and Rv0806c overlap by 56 nucleotides Rv0806c and Rv0807 are separated by 304 nucleotides Rv0807 and Rv0808 are separated by 86 nucleotides
Rv0805: Rv0805 - Class III cyclic nucleotide phosphodiesterase (cNMP PDE), at 898,831 to 899,787
Rv0805
Rv0806c: Rv0806c - Possible UDP-glucose-4-epimerase CpsY (galactowaldenase) (UDP-galactose-4-epimerase) (uridine diphosphate galactose-4-epimerase) (uridine diphospho-galactose-4-epimerase), at 899,732 to 901,330
Rv0806c
Rv0807: Rv0807 - Conserved hypothetical protein, at 901,635 to 902,024
Rv0807
Rv0808: Rv0808 - Amidophosphoribosyltransferase PurF (glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (gpatase), at 902,111 to 903,694
Rv0808
Position (kb) 899
900
901
902 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 898.780 kb on - strand at 898.799 kb on + strand at 898.837 kb on - strand at 898.837 kb on - strand at 898.843 kb on - strand at 898.870 kb on + strand at 898.880 kb on + strand at 898.880 kb on + strand at 898.880 kb on + strand at 898.880 kb on + strand at 898.881 kb on - strand at 898.884 kb on + strand at 898.884 kb on + strand at 898.884 kb on + strand at 898.885 kb on - strand at 899.028 kb on + strand, within Rv0805 at 899.119 kb on - strand, within Rv0805 at 899.891 kb on - strand at 899.891 kb on - strand at 899.938 kb on + strand, within Rv0806c at 899.962 kb on - strand, within Rv0806c at 899.980 kb on - strand, within Rv0806c at 899.990 kb on - strand, within Rv0806c at 900.030 kb on + strand, within Rv0806c at 900.033 kb on + strand, within Rv0806c at 900.039 kb on + strand, within Rv0806c at 900.040 kb on - strand, within Rv0806c at 900.040 kb on - strand, within Rv0806c at 900.181 kb on + strand, within Rv0806c at 900.328 kb on + strand, within Rv0806c at 900.434 kb on - strand, within Rv0806c at 900.434 kb on - strand, within Rv0806c at 900.435 kb on + strand, within Rv0806c at 900.436 kb on - strand, within Rv0806c at 900.436 kb on - strand, within Rv0806c at 900.436 kb on - strand, within Rv0806c at 900.552 kb on - strand, within Rv0806c at 900.648 kb on + strand, within Rv0806c at 900.723 kb on - strand, within Rv0806c at 900.784 kb on - strand, within Rv0806c at 901.037 kb on - strand, within Rv0806c at 901.047 kb on + strand, within Rv0806c at 901.100 kb on + strand, within Rv0806c at 901.101 kb on - strand, within Rv0806c at 901.162 kb on + strand, within Rv0806c at 901.367 kb on - strand at 901.457 kb on - strand at 901.487 kb on + strand at 901.558 kb on + strand at 901.559 kb on - strand at 901.559 kb on - strand at 901.559 kb on - strand at 901.559 kb on - strand at 901.559 kb on - strand at 901.559 kb on - strand at 901.634 kb on + strand at 901.634 kb on + strand at 901.635 kb on - strand at 901.761 kb on - strand, within Rv0807 at 902.085 kb on - strand at 902.118 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Menadione 0.005 mM remove 898,780 - -0.6 898,799 + -0.4 898,837 - -0.7 898,837 - -0.2 898,843 - +1.1 898,870 + -0.1 898,880 + -1.4 898,880 + +0.1 898,880 + -0.5 898,880 + -0.8 898,881 - +0.5 898,884 + +0.3 898,884 + -0.5 898,884 + -1.5 898,885 - +0.9 899,028 + Rv0805 0.21 -0.6 899,119 - Rv0805 0.30 +0.1 899,891 - -0.8 899,891 - +1.4 899,938 + Rv0806c 0.13 -1.7 899,962 - Rv0806c 0.14 -1.0 899,980 - Rv0806c 0.16 +0.2 899,990 - Rv0806c 0.16 -1.2 900,030 + Rv0806c 0.19 -1.3 900,033 + Rv0806c 0.19 -2.2 900,039 + Rv0806c 0.19 -0.8 900,040 - Rv0806c 0.19 -0.4 900,040 - Rv0806c 0.19 -2.1 900,181 + Rv0806c 0.28 +0.2 900,328 + Rv0806c 0.37 -1.2 900,434 - Rv0806c 0.44 -1.9 900,434 - Rv0806c 0.44 -0.8 900,435 + Rv0806c 0.44 -0.4 900,436 - Rv0806c 0.44 -1.0 900,436 - Rv0806c 0.44 +0.4 900,436 - Rv0806c 0.44 -0.9 900,552 - Rv0806c 0.51 -1.2 900,648 + Rv0806c 0.57 -1.5 900,723 - Rv0806c 0.62 -1.4 900,784 - Rv0806c 0.66 -2.0 901,037 - Rv0806c 0.82 -0.8 901,047 + Rv0806c 0.82 -1.7 901,100 + Rv0806c 0.86 -1.7 901,101 - Rv0806c 0.86 +2.8 901,162 + Rv0806c 0.89 +0.1 901,367 - +0.6 901,457 - +0.3 901,487 + +2.2 901,558 + +0.1 901,559 - +0.0 901,559 - -0.5 901,559 - -0.2 901,559 - +1.1 901,559 - +0.2 901,559 - -0.7 901,634 + +0.9 901,634 + -0.7 901,635 - -0.3 901,761 - Rv0807 0.32 -2.0 902,085 - +0.0 902,118 + +0.6
Or see this region's nucleotide sequence