Experiment: 7H9 with Menadione 0.005 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0679c and Rv0680c are separated by 1 nucleotides Rv0680c and Rv0681 are separated by 304 nucleotides Rv0681 and Rv0682 are separated by 248 nucleotides Rv0682 and Rv0683 overlap by 1 nucleotides
Rv0679c: Rv0679c - Conserved threonine rich protein, at 779,543 to 780,040
Rv0679c
Rv0680c: Rv0680c - Probable conserved transmembrane protein, at 780,042 to 780,416
Rv0680c
Rv0681: Rv0681 - Probable transcriptional regulatory protein (possibly TetR-family), at 780,721 to 781,311
Rv0681
Rv0682: Rv0682 - 30S ribosomal protein S12 RpsL, at 781,560 to 781,934
Rv0682
Rv0683: Rv0683 - 30S ribosomal protein S7 RpsG, at 781,934 to 782,404
Rv0683
Position (kb) 780
781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 779.797 kb on - strand, within Rv0679c at 779.914 kb on + strand, within Rv0679c at 780.066 kb on + strand at 780.066 kb on + strand at 780.066 kb on + strand at 780.075 kb on + strand at 780.075 kb on + strand at 780.076 kb on - strand at 780.076 kb on - strand at 780.142 kb on + strand, within Rv0680c at 780.143 kb on - strand, within Rv0680c at 780.482 kb on + strand at 780.482 kb on + strand at 780.482 kb on + strand at 780.483 kb on - strand at 780.483 kb on - strand at 780.483 kb on - strand at 780.574 kb on - strand at 780.582 kb on + strand at 780.582 kb on + strand at 780.583 kb on - strand at 780.583 kb on - strand at 780.583 kb on - strand at 780.854 kb on - strand, within Rv0681 at 780.854 kb on - strand, within Rv0681 at 780.854 kb on - strand, within Rv0681 at 780.881 kb on + strand, within Rv0681 at 780.881 kb on + strand, within Rv0681 at 780.998 kb on - strand, within Rv0681 at 780.998 kb on - strand, within Rv0681 at 781.066 kb on + strand, within Rv0681 at 781.066 kb on + strand, within Rv0681 at 781.066 kb on + strand, within Rv0681 at 781.067 kb on - strand, within Rv0681 at 781.120 kb on + strand, within Rv0681 at 781.296 kb on + strand at 781.309 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Menadione 0.005 mM remove 779,797 - Rv0679c 0.51 -1.4 779,914 + Rv0679c 0.74 -0.4 780,066 + +0.8 780,066 + -0.0 780,066 + +0.5 780,075 + -2.4 780,075 + -1.2 780,076 - -1.1 780,076 - -0.4 780,142 + Rv0680c 0.27 +0.8 780,143 - Rv0680c 0.27 +0.1 780,482 + +0.1 780,482 + +0.2 780,482 + -0.4 780,483 - +2.8 780,483 - +0.0 780,483 - -0.8 780,574 - -1.2 780,582 + +0.2 780,582 + -3.2 780,583 - -0.0 780,583 - +0.3 780,583 - -0.3 780,854 - Rv0681 0.23 +0.8 780,854 - Rv0681 0.23 +2.4 780,854 - Rv0681 0.23 +1.2 780,881 + Rv0681 0.27 -0.1 780,881 + Rv0681 0.27 -0.6 780,998 - Rv0681 0.47 +0.5 780,998 - Rv0681 0.47 -0.2 781,066 + Rv0681 0.58 +0.0 781,066 + Rv0681 0.58 +0.4 781,066 + Rv0681 0.58 -1.9 781,067 - Rv0681 0.59 -0.2 781,120 + Rv0681 0.68 +0.5 781,296 + -0.4 781,309 + +0.2
Or see this region's nucleotide sequence