Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS10670

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS10660 and ABIE51_RS10665 are separated by 24 nucleotidesABIE51_RS10665 and ABIE51_RS10670 are separated by 220 nucleotidesABIE51_RS10670 and ABIE51_RS10675 are separated by 561 nucleotides ABIE51_RS10660: ABIE51_RS10660 - alternative oxidase, at 2,316,416 to 2,317,063 _RS10660 ABIE51_RS10665: ABIE51_RS10665 - TetR/AcrR family transcriptional regulator, at 2,317,088 to 2,317,735 _RS10665 ABIE51_RS10670: ABIE51_RS10670 - LysR family transcriptional regulator, at 2,317,956 to 2,318,849 _RS10670 ABIE51_RS10675: ABIE51_RS10675 - cupin domain-containing protein, at 2,319,411 to 2,319,842 _RS10675 Position (kb) 2317 2318 2319Strain fitness (log2 ratio) -2 -1 0 1at 2317.200 kb on + strand, within ABIE51_RS10665at 2317.200 kb on + strand, within ABIE51_RS10665at 2317.201 kb on - strand, within ABIE51_RS10665at 2317.205 kb on - strand, within ABIE51_RS10665at 2317.353 kb on - strand, within ABIE51_RS10665at 2317.390 kb on - strand, within ABIE51_RS10665at 2317.461 kb on - strand, within ABIE51_RS10665at 2317.570 kb on - strand, within ABIE51_RS10665at 2317.667 kb on + strand, within ABIE51_RS10665at 2317.668 kb on - strand, within ABIE51_RS10665at 2317.680 kb on - strandat 2317.946 kb on - strandat 2318.148 kb on + strand, within ABIE51_RS10670at 2318.760 kb on + strandat 2318.760 kb on + strandat 2318.761 kb on - strandat 2318.770 kb on - strandat 2318.877 kb on + strandat 2318.877 kb on + strandat 2318.962 kb on - strandat 2319.008 kb on - strandat 2319.089 kb on + strandat 2319.176 kb on + strandat 2319.530 kb on - strand, within ABIE51_RS10675at 2319.604 kb on + strand, within ABIE51_RS10675at 2319.604 kb on + strand, within ABIE51_RS10675at 2319.670 kb on - strand, within ABIE51_RS10675at 2319.765 kb on - strand, within ABIE51_RS10675at 2319.846 kb on + strandat 2319.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
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2,317,200 + ABIE51_RS10665 0.17 -1.0
2,317,200 + ABIE51_RS10665 0.17 +0.1
2,317,201 - ABIE51_RS10665 0.17 +0.3
2,317,205 - ABIE51_RS10665 0.18 -0.2
2,317,353 - ABIE51_RS10665 0.41 +0.2
2,317,390 - ABIE51_RS10665 0.47 -0.1
2,317,461 - ABIE51_RS10665 0.58 -0.2
2,317,570 - ABIE51_RS10665 0.74 +0.1
2,317,667 + ABIE51_RS10665 0.89 -0.2
2,317,668 - ABIE51_RS10665 0.90 -0.3
2,317,680 - -0.0
2,317,946 - -0.2
2,318,148 + ABIE51_RS10670 0.21 -0.0
2,318,760 + +0.2
2,318,760 + -0.1
2,318,761 - -0.7
2,318,770 - -1.8
2,318,877 + -0.3
2,318,877 + -0.8
2,318,962 - -1.2
2,319,008 - +1.3
2,319,089 + -0.2
2,319,176 + -0.3
2,319,530 - ABIE51_RS10675 0.28 +0.4
2,319,604 + ABIE51_RS10675 0.45 +0.3
2,319,604 + ABIE51_RS10675 0.45 +0.3
2,319,670 - ABIE51_RS10675 0.60 -0.4
2,319,765 - ABIE51_RS10675 0.82 -0.4
2,319,846 + -0.0
2,319,847 - +0.5

Or see this region's nucleotide sequence