Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS10660 and ABIE51_RS10665 are separated by 24 nucleotides ABIE51_RS10665 and ABIE51_RS10670 are separated by 220 nucleotides ABIE51_RS10670 and ABIE51_RS10675 are separated by 561 nucleotides
ABIE51_RS10660: ABIE51_RS10660 - alternative oxidase, at 2,316,416 to 2,317,063
_RS10660
ABIE51_RS10665: ABIE51_RS10665 - TetR/AcrR family transcriptional regulator, at 2,317,088 to 2,317,735
_RS10665
ABIE51_RS10670: ABIE51_RS10670 - LysR family transcriptional regulator, at 2,317,956 to 2,318,849
_RS10670
ABIE51_RS10675: ABIE51_RS10675 - cupin domain-containing protein, at 2,319,411 to 2,319,842
_RS10675
Position (kb)
2317
2318
2319 Strain fitness (log2 ratio)
-2
-1
0
1 at 2317.200 kb on + strand, within ABIE51_RS10665 at 2317.200 kb on + strand, within ABIE51_RS10665 at 2317.201 kb on - strand, within ABIE51_RS10665 at 2317.205 kb on - strand, within ABIE51_RS10665 at 2317.353 kb on - strand, within ABIE51_RS10665 at 2317.390 kb on - strand, within ABIE51_RS10665 at 2317.461 kb on - strand, within ABIE51_RS10665 at 2317.570 kb on - strand, within ABIE51_RS10665 at 2317.667 kb on + strand, within ABIE51_RS10665 at 2317.668 kb on - strand, within ABIE51_RS10665 at 2317.680 kb on - strand at 2317.946 kb on - strand at 2318.148 kb on + strand, within ABIE51_RS10670 at 2318.760 kb on + strand at 2318.760 kb on + strand at 2318.761 kb on - strand at 2318.770 kb on - strand at 2318.877 kb on + strand at 2318.877 kb on + strand at 2318.962 kb on - strand at 2319.008 kb on - strand at 2319.089 kb on + strand at 2319.176 kb on + strand at 2319.530 kb on - strand, within ABIE51_RS10675 at 2319.604 kb on + strand, within ABIE51_RS10675 at 2319.604 kb on + strand, within ABIE51_RS10675 at 2319.670 kb on - strand, within ABIE51_RS10675 at 2319.765 kb on - strand, within ABIE51_RS10675 at 2319.846 kb on + strand at 2319.847 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM remove 2,317,200 + ABIE51_RS10665 0.17 -1.0 2,317,200 + ABIE51_RS10665 0.17 +0.1 2,317,201 - ABIE51_RS10665 0.17 +0.3 2,317,205 - ABIE51_RS10665 0.18 -0.2 2,317,353 - ABIE51_RS10665 0.41 +0.2 2,317,390 - ABIE51_RS10665 0.47 -0.1 2,317,461 - ABIE51_RS10665 0.58 -0.2 2,317,570 - ABIE51_RS10665 0.74 +0.1 2,317,667 + ABIE51_RS10665 0.89 -0.2 2,317,668 - ABIE51_RS10665 0.90 -0.3 2,317,680 - -0.0 2,317,946 - -0.2 2,318,148 + ABIE51_RS10670 0.21 -0.0 2,318,760 + +0.2 2,318,760 + -0.1 2,318,761 - -0.7 2,318,770 - -1.8 2,318,877 + -0.3 2,318,877 + -0.8 2,318,962 - -1.2 2,319,008 - +1.3 2,319,089 + -0.2 2,319,176 + -0.3 2,319,530 - ABIE51_RS10675 0.28 +0.4 2,319,604 + ABIE51_RS10675 0.45 +0.3 2,319,604 + ABIE51_RS10675 0.45 +0.3 2,319,670 - ABIE51_RS10675 0.60 -0.4 2,319,765 - ABIE51_RS10675 0.82 -0.4 2,319,846 + -0.0 2,319,847 - +0.5
Or see this region's nucleotide sequence