Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS08780 and ABIE51_RS08785 are separated by 106 nucleotides ABIE51_RS08785 and ABIE51_RS08790 are separated by 410 nucleotides ABIE51_RS08790 and ABIE51_RS08795 are separated by 2 nucleotides
ABIE51_RS08780: ABIE51_RS08780 - SMC-Scp complex subunit ScpB, at 1,863,317 to 1,864,339
_RS08780
ABIE51_RS08785: ABIE51_RS08785 - ScpA family protein, at 1,864,446 to 1,865,360
_RS08785
ABIE51_RS08790: ABIE51_RS08790 - YciI family protein, at 1,865,771 to 1,866,070
_RS08790
ABIE51_RS08795: ABIE51_RS08795 - BolA family protein, at 1,866,073 to 1,866,351
_RS08795
Position (kb) 1864
1865
1866 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1863.465 kb on + strand, within ABIE51_RS08780 at 1863.465 kb on + strand, within ABIE51_RS08780 at 1863.870 kb on + strand, within ABIE51_RS08780 at 1863.870 kb on + strand, within ABIE51_RS08780 at 1863.870 kb on + strand, within ABIE51_RS08780 at 1863.870 kb on + strand, within ABIE51_RS08780 at 1863.870 kb on + strand, within ABIE51_RS08780 at 1863.870 kb on + strand, within ABIE51_RS08780 at 1863.870 kb on + strand, within ABIE51_RS08780 at 1863.918 kb on - strand, within ABIE51_RS08780 at 1863.918 kb on - strand, within ABIE51_RS08780 at 1863.918 kb on - strand, within ABIE51_RS08780 at 1864.035 kb on + strand, within ABIE51_RS08780 at 1864.036 kb on - strand, within ABIE51_RS08780 at 1864.074 kb on + strand, within ABIE51_RS08780 at 1864.074 kb on + strand, within ABIE51_RS08780 at 1864.074 kb on + strand, within ABIE51_RS08780 at 1864.075 kb on - strand, within ABIE51_RS08780 at 1864.075 kb on - strand, within ABIE51_RS08780 at 1864.422 kb on + strand at 1864.422 kb on + strand at 1864.422 kb on + strand at 1864.531 kb on + strand at 1864.531 kb on + strand at 1864.531 kb on + strand at 1864.531 kb on + strand at 1864.532 kb on - strand at 1864.921 kb on + strand, within ABIE51_RS08785 at 1864.921 kb on + strand, within ABIE51_RS08785 at 1864.921 kb on + strand, within ABIE51_RS08785 at 1864.921 kb on + strand, within ABIE51_RS08785 at 1864.922 kb on - strand, within ABIE51_RS08785 at 1864.922 kb on - strand, within ABIE51_RS08785 at 1865.041 kb on + strand, within ABIE51_RS08785 at 1865.041 kb on + strand, within ABIE51_RS08785 at 1865.041 kb on + strand, within ABIE51_RS08785 at 1865.042 kb on - strand, within ABIE51_RS08785 at 1865.042 kb on - strand, within ABIE51_RS08785 at 1865.086 kb on + strand, within ABIE51_RS08785 at 1865.086 kb on + strand, within ABIE51_RS08785 at 1865.086 kb on + strand, within ABIE51_RS08785 at 1865.086 kb on + strand, within ABIE51_RS08785 at 1865.086 kb on + strand, within ABIE51_RS08785 at 1865.087 kb on - strand, within ABIE51_RS08785 at 1865.087 kb on - strand, within ABIE51_RS08785 at 1865.087 kb on - strand, within ABIE51_RS08785 at 1865.087 kb on - strand, within ABIE51_RS08785 at 1865.095 kb on + strand, within ABIE51_RS08785 at 1865.096 kb on - strand, within ABIE51_RS08785 at 1865.158 kb on + strand, within ABIE51_RS08785 at 1865.158 kb on + strand, within ABIE51_RS08785 at 1865.158 kb on + strand, within ABIE51_RS08785 at 1865.158 kb on + strand, within ABIE51_RS08785 at 1865.158 kb on + strand, within ABIE51_RS08785 at 1865.158 kb on + strand, within ABIE51_RS08785 at 1865.159 kb on - strand, within ABIE51_RS08785 at 1865.224 kb on + strand, within ABIE51_RS08785 at 1865.224 kb on + strand, within ABIE51_RS08785 at 1865.224 kb on + strand, within ABIE51_RS08785 at 1865.224 kb on + strand, within ABIE51_RS08785 at 1865.224 kb on + strand, within ABIE51_RS08785 at 1865.224 kb on + strand, within ABIE51_RS08785 at 1865.224 kb on + strand, within ABIE51_RS08785 at 1865.224 kb on + strand, within ABIE51_RS08785 at 1865.224 kb on + strand, within ABIE51_RS08785 at 1865.224 kb on + strand, within ABIE51_RS08785 at 1865.224 kb on + strand, within ABIE51_RS08785 at 1865.224 kb on + strand, within ABIE51_RS08785 at 1865.225 kb on - strand, within ABIE51_RS08785 at 1865.225 kb on - strand, within ABIE51_RS08785 at 1865.225 kb on - strand, within ABIE51_RS08785 at 1865.225 kb on - strand, within ABIE51_RS08785 at 1865.225 kb on - strand, within ABIE51_RS08785 at 1865.225 kb on - strand, within ABIE51_RS08785 at 1865.225 kb on - strand, within ABIE51_RS08785 at 1865.225 kb on - strand, within ABIE51_RS08785 at 1865.394 kb on + strand at 1865.394 kb on + strand at 1865.394 kb on + strand at 1865.395 kb on - strand at 1865.395 kb on - strand at 1865.395 kb on - strand at 1865.395 kb on - strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.505 kb on + strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.506 kb on - strand at 1865.507 kb on + strand at 1865.507 kb on + strand at 1865.507 kb on + strand at 1865.507 kb on + strand at 1865.507 kb on + strand at 1865.507 kb on + strand at 1865.507 kb on + strand at 1865.507 kb on + strand at 1865.507 kb on + strand at 1865.507 kb on + strand at 1865.507 kb on + strand at 1865.507 kb on + strand at 1865.507 kb on + strand at 1865.508 kb on - strand at 1865.508 kb on - strand at 1865.508 kb on - strand at 1865.508 kb on - strand at 1865.508 kb on - strand at 1865.508 kb on - strand at 1865.508 kb on - strand at 1865.508 kb on - strand at 1865.508 kb on - strand at 1865.508 kb on - strand at 1865.508 kb on - strand at 1865.687 kb on + strand at 1865.687 kb on + strand at 1865.725 kb on + strand at 1865.777 kb on + strand at 1865.777 kb on + strand at 1865.777 kb on + strand at 1865.777 kb on + strand at 1865.778 kb on - strand at 1865.778 kb on - strand at 1865.778 kb on - strand at 1865.778 kb on - strand at 1865.778 kb on - strand at 1865.778 kb on - strand at 1865.778 kb on - strand at 1865.778 kb on - strand at 1865.792 kb on + strand at 1865.792 kb on + strand at 1865.792 kb on + strand at 1865.792 kb on + strand at 1865.792 kb on + strand at 1865.793 kb on - strand at 1865.808 kb on + strand, within ABIE51_RS08790 at 1865.808 kb on + strand, within ABIE51_RS08790 at 1865.808 kb on + strand, within ABIE51_RS08790 at 1865.808 kb on + strand, within ABIE51_RS08790 at 1865.808 kb on + strand, within ABIE51_RS08790 at 1865.808 kb on + strand, within ABIE51_RS08790 at 1865.808 kb on + strand, within ABIE51_RS08790 at 1865.808 kb on + strand, within ABIE51_RS08790 at 1865.808 kb on + strand, within ABIE51_RS08790 at 1865.808 kb on + strand, within ABIE51_RS08790 at 1865.809 kb on - strand, within ABIE51_RS08790 at 1865.809 kb on - strand, within ABIE51_RS08790 at 1865.809 kb on - strand, within ABIE51_RS08790 at 1865.809 kb on - strand, within ABIE51_RS08790 at 1866.008 kb on + strand, within ABIE51_RS08790 at 1866.008 kb on + strand, within ABIE51_RS08790 at 1866.008 kb on + strand, within ABIE51_RS08790 at 1866.009 kb on - strand, within ABIE51_RS08790 at 1866.009 kb on - strand, within ABIE51_RS08790 at 1866.009 kb on - strand, within ABIE51_RS08790 at 1866.026 kb on + strand, within ABIE51_RS08790 at 1866.027 kb on - strand, within ABIE51_RS08790 at 1866.271 kb on + strand, within ABIE51_RS08795 at 1866.271 kb on + strand, within ABIE51_RS08795 at 1866.271 kb on + strand, within ABIE51_RS08795 at 1866.271 kb on + strand, within ABIE51_RS08795 at 1866.272 kb on - strand, within ABIE51_RS08795
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.716205166666667 mM remove 1,863,465 + ABIE51_RS08780 0.14 -1.1 1,863,465 + ABIE51_RS08780 0.14 +2.1 1,863,870 + ABIE51_RS08780 0.54 -1.7 1,863,870 + ABIE51_RS08780 0.54 +1.1 1,863,870 + ABIE51_RS08780 0.54 -1.5 1,863,870 + ABIE51_RS08780 0.54 +0.1 1,863,870 + ABIE51_RS08780 0.54 -0.8 1,863,870 + ABIE51_RS08780 0.54 -1.1 1,863,870 + ABIE51_RS08780 0.54 -1.7 1,863,918 - ABIE51_RS08780 0.59 -1.7 1,863,918 - ABIE51_RS08780 0.59 -3.1 1,863,918 - ABIE51_RS08780 0.59 -2.7 1,864,035 + ABIE51_RS08780 0.70 -0.5 1,864,036 - ABIE51_RS08780 0.70 -1.4 1,864,074 + ABIE51_RS08780 0.74 +0.2 1,864,074 + ABIE51_RS08780 0.74 -1.3 1,864,074 + ABIE51_RS08780 0.74 -0.7 1,864,075 - ABIE51_RS08780 0.74 +0.5 1,864,075 - ABIE51_RS08780 0.74 +0.1 1,864,422 + -0.3 1,864,422 + -0.3 1,864,422 + -0.4 1,864,531 + +0.7 1,864,531 + -1.8 1,864,531 + +0.1 1,864,531 + -1.1 1,864,532 - -2.1 1,864,921 + ABIE51_RS08785 0.52 -1.0 1,864,921 + ABIE51_RS08785 0.52 -0.4 1,864,921 + ABIE51_RS08785 0.52 -0.8 1,864,921 + ABIE51_RS08785 0.52 -2.0 1,864,922 - ABIE51_RS08785 0.52 -2.4 1,864,922 - ABIE51_RS08785 0.52 -2.3 1,865,041 + ABIE51_RS08785 0.65 -1.7 1,865,041 + ABIE51_RS08785 0.65 -1.0 1,865,041 + ABIE51_RS08785 0.65 -0.2 1,865,042 - ABIE51_RS08785 0.65 -1.3 1,865,042 - ABIE51_RS08785 0.65 -0.5 1,865,086 + ABIE51_RS08785 0.70 -0.4 1,865,086 + ABIE51_RS08785 0.70 -0.7 1,865,086 + ABIE51_RS08785 0.70 -0.9 1,865,086 + ABIE51_RS08785 0.70 -2.9 1,865,086 + ABIE51_RS08785 0.70 -0.3 1,865,087 - ABIE51_RS08785 0.70 -0.5 1,865,087 - ABIE51_RS08785 0.70 -1.3 1,865,087 - ABIE51_RS08785 0.70 -0.7 1,865,087 - ABIE51_RS08785 0.70 -1.3 1,865,095 + ABIE51_RS08785 0.71 -0.6 1,865,096 - ABIE51_RS08785 0.71 -0.3 1,865,158 + ABIE51_RS08785 0.78 -0.3 1,865,158 + ABIE51_RS08785 0.78 -0.3 1,865,158 + ABIE51_RS08785 0.78 -1.1 1,865,158 + ABIE51_RS08785 0.78 -0.9 1,865,158 + ABIE51_RS08785 0.78 -0.5 1,865,158 + ABIE51_RS08785 0.78 -0.4 1,865,159 - ABIE51_RS08785 0.78 -0.4 1,865,224 + ABIE51_RS08785 0.85 +0.4 1,865,224 + ABIE51_RS08785 0.85 -1.0 1,865,224 + ABIE51_RS08785 0.85 -0.9 1,865,224 + ABIE51_RS08785 0.85 -0.5 1,865,224 + ABIE51_RS08785 0.85 -1.3 1,865,224 + ABIE51_RS08785 0.85 -1.3 1,865,224 + ABIE51_RS08785 0.85 +0.7 1,865,224 + ABIE51_RS08785 0.85 -1.2 1,865,224 + ABIE51_RS08785 0.85 -0.6 1,865,224 + ABIE51_RS08785 0.85 -0.4 1,865,224 + ABIE51_RS08785 0.85 -1.3 1,865,224 + ABIE51_RS08785 0.85 -0.8 1,865,225 - ABIE51_RS08785 0.85 -1.0 1,865,225 - ABIE51_RS08785 0.85 -0.6 1,865,225 - ABIE51_RS08785 0.85 -1.7 1,865,225 - ABIE51_RS08785 0.85 -0.2 1,865,225 - ABIE51_RS08785 0.85 -1.2 1,865,225 - ABIE51_RS08785 0.85 -0.5 1,865,225 - ABIE51_RS08785 0.85 +0.3 1,865,225 - ABIE51_RS08785 0.85 -1.6 1,865,394 + +1.8 1,865,394 + +0.5 1,865,394 + +0.5 1,865,395 - -1.3 1,865,395 - -1.5 1,865,395 - -0.3 1,865,395 - -1.0 1,865,505 + +0.2 1,865,505 + -0.5 1,865,505 + -0.3 1,865,505 + -0.2 1,865,505 + +0.1 1,865,505 + +0.3 1,865,505 + +0.1 1,865,505 + -0.5 1,865,505 + -0.6 1,865,505 + -0.2 1,865,505 + -0.7 1,865,505 + -0.6 1,865,505 + -0.3 1,865,505 + -0.1 1,865,505 + +0.1 1,865,505 + -0.2 1,865,505 + -0.2 1,865,505 + +0.1 1,865,505 + +0.7 1,865,505 + +0.1 1,865,506 - -1.1 1,865,506 - +0.1 1,865,506 - -0.6 1,865,506 - -0.9 1,865,506 - -1.2 1,865,506 - -1.2 1,865,506 - +1.1 1,865,506 - -0.5 1,865,506 - -0.6 1,865,506 - -0.2 1,865,506 - -1.4 1,865,506 - -0.1 1,865,506 - -0.7 1,865,506 - -0.0 1,865,506 - -0.2 1,865,506 - -0.4 1,865,507 + +1.1 1,865,507 + -0.1 1,865,507 + +0.8 1,865,507 + +0.0 1,865,507 + +0.7 1,865,507 + +0.7 1,865,507 + +0.6 1,865,507 + +0.2 1,865,507 + +0.3 1,865,507 + +0.0 1,865,507 + +0.4 1,865,507 + -0.0 1,865,507 + -0.4 1,865,508 - -1.3 1,865,508 - +0.5 1,865,508 - +0.1 1,865,508 - -0.5 1,865,508 - +0.7 1,865,508 - +0.1 1,865,508 - +0.9 1,865,508 - +0.4 1,865,508 - -1.5 1,865,508 - -1.2 1,865,508 - -1.2 1,865,687 + +0.4 1,865,687 + -0.3 1,865,725 + +0.3 1,865,777 + -0.3 1,865,777 + -0.0 1,865,777 + +1.1 1,865,777 + +0.4 1,865,778 - +0.1 1,865,778 - -0.5 1,865,778 - +0.0 1,865,778 - +0.0 1,865,778 - -0.2 1,865,778 - -0.2 1,865,778 - +0.5 1,865,778 - +0.4 1,865,792 + -0.3 1,865,792 + -0.2 1,865,792 + -0.2 1,865,792 + +0.1 1,865,792 + -0.4 1,865,793 - -2.4 1,865,808 + ABIE51_RS08790 0.12 -0.4 1,865,808 + ABIE51_RS08790 0.12 +0.4 1,865,808 + ABIE51_RS08790 0.12 +0.1 1,865,808 + ABIE51_RS08790 0.12 -1.0 1,865,808 + ABIE51_RS08790 0.12 +0.0 1,865,808 + ABIE51_RS08790 0.12 +0.3 1,865,808 + ABIE51_RS08790 0.12 +1.1 1,865,808 + ABIE51_RS08790 0.12 +0.5 1,865,808 + ABIE51_RS08790 0.12 +0.8 1,865,808 + ABIE51_RS08790 0.12 -0.9 1,865,809 - ABIE51_RS08790 0.13 +0.4 1,865,809 - ABIE51_RS08790 0.13 +0.3 1,865,809 - ABIE51_RS08790 0.13 -0.3 1,865,809 - ABIE51_RS08790 0.13 +0.4 1,866,008 + ABIE51_RS08790 0.79 -0.0 1,866,008 + ABIE51_RS08790 0.79 -0.5 1,866,008 + ABIE51_RS08790 0.79 +0.4 1,866,009 - ABIE51_RS08790 0.79 +0.3 1,866,009 - ABIE51_RS08790 0.79 +0.1 1,866,009 - ABIE51_RS08790 0.79 -0.3 1,866,026 + ABIE51_RS08790 0.85 -0.4 1,866,027 - ABIE51_RS08790 0.85 +0.3 1,866,271 + ABIE51_RS08795 0.71 -0.2 1,866,271 + ABIE51_RS08795 0.71 +0.2 1,866,271 + ABIE51_RS08795 0.71 -1.0 1,866,271 + ABIE51_RS08795 0.71 -0.2 1,866,272 - ABIE51_RS08795 0.71 +0.1
Or see this region's nucleotide sequence