Experiment: 7H9 with Plumbagin 0.01 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0425c and Rv0426c are separated by 51 nucleotides Rv0426c and Rv0427c are separated by 200 nucleotides Rv0427c and Rv0428c are separated by 2 nucleotides Rv0428c and Rv0429c overlap by 1 nucleotides
Rv0425c: Rv0425c - Possible metal cation transporting P-type ATPase CtpH, at 510,702 to 515,321
Rv0425c
Rv0426c: Rv0426c - Possible transmembrane protein, at 515,373 to 515,816
Rv0426c
Rv0427c: Rv0427c - Probable exodeoxyribonuclease III protein XthA (exonuclease III) (EXO III) (AP endonuclease VI), at 516,017 to 516,892
Rv0427c
Rv0428c: Rv0428c - GCN5-related N-acetyltransferase, at 516,895 to 517,803
Rv0428c
Rv0429c: Rv0429c - Probable polypeptide deformylase Def (PDF) (formylmethionine deformylase), at 517,803 to 518,396
Rv0429c
Position (kb) 516
517 Strain fitness (log2 ratio) -1
0
1
2 at 515.204 kb on + strand at 515.375 kb on - strand at 515.550 kb on + strand, within Rv0426c at 515.660 kb on + strand, within Rv0426c at 515.660 kb on + strand, within Rv0426c at 515.661 kb on - strand, within Rv0426c at 515.847 kb on + strand at 516.199 kb on - strand, within Rv0427c at 516.230 kb on + strand, within Rv0427c at 516.441 kb on + strand, within Rv0427c at 516.669 kb on + strand, within Rv0427c at 516.896 kb on + strand at 516.904 kb on - strand at 516.932 kb on + strand at 517.007 kb on + strand, within Rv0428c at 517.181 kb on + strand, within Rv0428c at 517.181 kb on + strand, within Rv0428c at 517.182 kb on - strand, within Rv0428c at 517.182 kb on - strand, within Rv0428c at 517.235 kb on - strand, within Rv0428c at 517.465 kb on - strand, within Rv0428c at 517.474 kb on + strand, within Rv0428c at 517.495 kb on + strand, within Rv0428c at 517.760 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Plumbagin 0.01 mM remove 515,204 + -0.0 515,375 - +0.0 515,550 + Rv0426c 0.40 -0.4 515,660 + Rv0426c 0.65 +0.4 515,660 + Rv0426c 0.65 +0.2 515,661 - Rv0426c 0.65 -0.2 515,847 + +0.6 516,199 - Rv0427c 0.21 +1.8 516,230 + Rv0427c 0.24 -0.6 516,441 + Rv0427c 0.48 -0.5 516,669 + Rv0427c 0.74 +0.4 516,896 + -1.0 516,904 - +0.3 516,932 + +0.0 517,007 + Rv0428c 0.12 +0.0 517,181 + Rv0428c 0.31 +1.8 517,181 + Rv0428c 0.31 +0.3 517,182 - Rv0428c 0.32 -0.4 517,182 - Rv0428c 0.32 +0.3 517,235 - Rv0428c 0.37 +0.3 517,465 - Rv0428c 0.63 -0.1 517,474 + Rv0428c 0.64 -0.4 517,495 + Rv0428c 0.66 -1.4 517,760 + -0.2
Or see this region's nucleotide sequence