Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS14115 and ABIE51_RS14120 are separated by 138 nucleotides ABIE51_RS14120 and ABIE51_RS14125 are separated by 181 nucleotides ABIE51_RS14125 and ABIE51_RS14130 are separated by 103 nucleotides ABIE51_RS14130 and ABIE51_RS14135 are separated by 41 nucleotides ABIE51_RS14135 and ABIE51_RS14140 are separated by 73 nucleotides
ABIE51_RS14115: ABIE51_RS14115 - enoyl-ACP reductase, at 3,052,773 to 3,053,567
_RS14115
ABIE51_RS14120: ABIE51_RS14120 - peptidyl-prolyl cis-trans isomerase, at 3,053,706 to 3,055,685
_RS14120
ABIE51_RS14125: ABIE51_RS14125 - tRNA-Asp, at 3,055,867 to 3,055,943
_RS14125
ABIE51_RS14130: ABIE51_RS14130 - tRNA-Asp, at 3,056,047 to 3,056,123
_RS14130
ABIE51_RS14135: ABIE51_RS14135 - tRNA-Val, at 3,056,165 to 3,056,239
_RS14135
ABIE51_RS14140: ABIE51_RS14140 - HU family DNA-binding protein, at 3,056,313 to 3,056,585
_RS14140
Position (kb)
3053
3054
3055
3056 Strain fitness (log2 ratio)
-2
-1
0
1 at 3054.183 kb on - strand, within ABIE51_RS14120 at 3054.859 kb on + strand, within ABIE51_RS14120 at 3054.928 kb on + strand, within ABIE51_RS14120 at 3054.929 kb on - strand, within ABIE51_RS14120 at 3054.929 kb on - strand, within ABIE51_RS14120 at 3054.929 kb on - strand, within ABIE51_RS14120 at 3054.979 kb on + strand, within ABIE51_RS14120 at 3054.979 kb on + strand, within ABIE51_RS14120 at 3054.979 kb on + strand, within ABIE51_RS14120 at 3054.980 kb on - strand, within ABIE51_RS14120 at 3054.980 kb on - strand, within ABIE51_RS14120 at 3054.980 kb on - strand, within ABIE51_RS14120 at 3055.222 kb on + strand, within ABIE51_RS14120 at 3055.222 kb on + strand, within ABIE51_RS14120 at 3055.223 kb on - strand, within ABIE51_RS14120 at 3055.231 kb on + strand, within ABIE51_RS14120 at 3055.571 kb on - strand at 3055.588 kb on + strand at 3055.588 kb on + strand at 3055.588 kb on + strand at 3055.589 kb on - strand at 3055.589 kb on - strand at 3055.589 kb on - strand at 3055.589 kb on - strand at 3055.707 kb on - strand at 3055.861 kb on + strand at 3055.862 kb on - strand at 3055.862 kb on - strand at 3055.936 kb on - strand at 3055.936 kb on - strand at 3056.009 kb on + strand at 3056.010 kb on - strand at 3056.013 kb on - strand at 3056.013 kb on - strand at 3056.013 kb on - strand at 3056.013 kb on - strand at 3056.013 kb on - strand at 3056.143 kb on - strand at 3056.143 kb on - strand at 3056.221 kb on - strand, within ABIE51_RS14135 at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand at 3056.232 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.835572666666667 mM remove 3,054,183 - ABIE51_RS14120 0.24 -0.4 3,054,859 + ABIE51_RS14120 0.58 +0.4 3,054,928 + ABIE51_RS14120 0.62 -1.1 3,054,929 - ABIE51_RS14120 0.62 -0.2 3,054,929 - ABIE51_RS14120 0.62 +0.3 3,054,929 - ABIE51_RS14120 0.62 -0.3 3,054,979 + ABIE51_RS14120 0.64 +0.4 3,054,979 + ABIE51_RS14120 0.64 +0.1 3,054,979 + ABIE51_RS14120 0.64 +0.9 3,054,980 - ABIE51_RS14120 0.64 -0.7 3,054,980 - ABIE51_RS14120 0.64 -0.4 3,054,980 - ABIE51_RS14120 0.64 -0.4 3,055,222 + ABIE51_RS14120 0.77 +0.3 3,055,222 + ABIE51_RS14120 0.77 -0.4 3,055,223 - ABIE51_RS14120 0.77 -0.2 3,055,231 + ABIE51_RS14120 0.77 -0.3 3,055,571 - -0.2 3,055,588 + +1.4 3,055,588 + -0.4 3,055,588 + -0.3 3,055,589 - +0.0 3,055,589 - -0.1 3,055,589 - -0.3 3,055,589 - +0.3 3,055,707 - -0.3 3,055,861 + -0.2 3,055,862 - -1.0 3,055,862 - +0.1 3,055,936 - -0.7 3,055,936 - +0.4 3,056,009 + +0.3 3,056,010 - -0.0 3,056,013 - -0.2 3,056,013 - -0.1 3,056,013 - +0.2 3,056,013 - +0.1 3,056,013 - -2.5 3,056,143 - -1.3 3,056,143 - +0.6 3,056,221 - ABIE51_RS14135 0.75 +0.0 3,056,232 - +0.4 3,056,232 - +0.2 3,056,232 - +0.5 3,056,232 - -0.2 3,056,232 - -1.0 3,056,232 - +0.1 3,056,232 - +1.2 3,056,232 - -0.2 3,056,232 - +0.1 3,056,232 - +0.8
Or see this region's nucleotide sequence