Experiment: DMSO control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03220 and ABIE51_RS03225 are separated by 152 nucleotides ABIE51_RS03225 and ABIE51_RS03230 are separated by 61 nucleotides
ABIE51_RS03220: ABIE51_RS03220 - FtsX-like permease family protein, at 712,877 to 714,034
_RS03220
ABIE51_RS03225: ABIE51_RS03225 - ABC transporter ATP-binding protein, at 714,187 to 714,882
_RS03225
ABIE51_RS03230: ABIE51_RS03230 - efflux RND transporter periplasmic adaptor subunit, at 714,944 to 716,197
_RS03230
Position (kb) 714
715 Strain fitness (log2 ratio) -1
0
1 at 713.409 kb on + strand, within ABIE51_RS03220 at 713.409 kb on + strand, within ABIE51_RS03220 at 713.409 kb on + strand, within ABIE51_RS03220 at 713.410 kb on - strand, within ABIE51_RS03220 at 713.410 kb on - strand, within ABIE51_RS03220 at 713.410 kb on - strand, within ABIE51_RS03220 at 713.410 kb on - strand, within ABIE51_RS03220 at 713.410 kb on - strand, within ABIE51_RS03220 at 713.410 kb on - strand, within ABIE51_RS03220 at 713.410 kb on - strand, within ABIE51_RS03220 at 713.410 kb on - strand, within ABIE51_RS03220 at 713.433 kb on + strand, within ABIE51_RS03220 at 713.433 kb on + strand, within ABIE51_RS03220 at 713.433 kb on + strand, within ABIE51_RS03220 at 713.433 kb on + strand, within ABIE51_RS03220 at 713.434 kb on - strand, within ABIE51_RS03220 at 713.434 kb on - strand, within ABIE51_RS03220 at 713.434 kb on - strand, within ABIE51_RS03220 at 713.455 kb on - strand, within ABIE51_RS03220 at 713.455 kb on - strand, within ABIE51_RS03220 at 713.514 kb on + strand, within ABIE51_RS03220 at 713.515 kb on - strand, within ABIE51_RS03220 at 713.655 kb on + strand, within ABIE51_RS03220 at 713.656 kb on - strand, within ABIE51_RS03220 at 713.688 kb on + strand, within ABIE51_RS03220 at 713.688 kb on + strand, within ABIE51_RS03220 at 713.689 kb on - strand, within ABIE51_RS03220 at 713.697 kb on + strand, within ABIE51_RS03220 at 713.698 kb on - strand, within ABIE51_RS03220 at 713.698 kb on - strand, within ABIE51_RS03220 at 713.698 kb on - strand, within ABIE51_RS03220 at 713.709 kb on + strand, within ABIE51_RS03220 at 713.709 kb on + strand, within ABIE51_RS03220 at 713.710 kb on - strand, within ABIE51_RS03220 at 713.757 kb on + strand, within ABIE51_RS03220 at 713.758 kb on - strand, within ABIE51_RS03220 at 713.782 kb on - strand, within ABIE51_RS03220 at 713.782 kb on - strand, within ABIE51_RS03220 at 713.782 kb on - strand, within ABIE51_RS03220 at 713.782 kb on - strand, within ABIE51_RS03220 at 714.027 kb on + strand at 714.027 kb on + strand at 714.027 kb on + strand at 714.028 kb on - strand at 714.028 kb on - strand at 714.028 kb on - strand at 714.599 kb on + strand, within ABIE51_RS03225 at 714.599 kb on + strand, within ABIE51_RS03225 at 714.599 kb on + strand, within ABIE51_RS03225 at 714.600 kb on - strand, within ABIE51_RS03225 at 714.600 kb on - strand, within ABIE51_RS03225 at 714.842 kb on + strand at 714.842 kb on + strand at 714.842 kb on + strand at 714.842 kb on + strand at 714.842 kb on + strand at 714.843 kb on - strand at 714.843 kb on - strand at 714.843 kb on - strand at 714.843 kb on - strand at 714.843 kb on - strand at 714.843 kb on - strand at 714.843 kb on - strand at 714.843 kb on - strand at 714.843 kb on - strand at 714.843 kb on - strand at 714.927 kb on + strand at 714.927 kb on + strand at 714.927 kb on + strand at 714.927 kb on + strand at 714.927 kb on + strand at 714.927 kb on + strand at 714.927 kb on + strand at 714.945 kb on + strand at 714.945 kb on + strand at 715.365 kb on + strand, within ABIE51_RS03230 at 715.366 kb on - strand, within ABIE51_RS03230 at 715.689 kb on + strand, within ABIE51_RS03230
Per-strain Table
Position Strand Gene LocusTag Fraction DMSO control remove 713,409 + ABIE51_RS03220 0.46 +0.0 713,409 + ABIE51_RS03220 0.46 -0.3 713,409 + ABIE51_RS03220 0.46 +0.4 713,410 - ABIE51_RS03220 0.46 +1.2 713,410 - ABIE51_RS03220 0.46 +0.4 713,410 - ABIE51_RS03220 0.46 -1.2 713,410 - ABIE51_RS03220 0.46 +0.5 713,410 - ABIE51_RS03220 0.46 -0.2 713,410 - ABIE51_RS03220 0.46 +0.1 713,410 - ABIE51_RS03220 0.46 +0.1 713,410 - ABIE51_RS03220 0.46 -0.4 713,433 + ABIE51_RS03220 0.48 +0.0 713,433 + ABIE51_RS03220 0.48 -0.0 713,433 + ABIE51_RS03220 0.48 -0.4 713,433 + ABIE51_RS03220 0.48 -0.2 713,434 - ABIE51_RS03220 0.48 +0.2 713,434 - ABIE51_RS03220 0.48 +0.3 713,434 - ABIE51_RS03220 0.48 +0.0 713,455 - ABIE51_RS03220 0.50 -0.4 713,455 - ABIE51_RS03220 0.50 +0.4 713,514 + ABIE51_RS03220 0.55 -0.1 713,515 - ABIE51_RS03220 0.55 -0.1 713,655 + ABIE51_RS03220 0.67 -0.2 713,656 - ABIE51_RS03220 0.67 -0.0 713,688 + ABIE51_RS03220 0.70 +1.4 713,688 + ABIE51_RS03220 0.70 -0.1 713,689 - ABIE51_RS03220 0.70 +0.1 713,697 + ABIE51_RS03220 0.71 +0.4 713,698 - ABIE51_RS03220 0.71 -0.8 713,698 - ABIE51_RS03220 0.71 +0.2 713,698 - ABIE51_RS03220 0.71 +0.3 713,709 + ABIE51_RS03220 0.72 +0.4 713,709 + ABIE51_RS03220 0.72 -0.2 713,710 - ABIE51_RS03220 0.72 -0.4 713,757 + ABIE51_RS03220 0.76 +0.6 713,758 - ABIE51_RS03220 0.76 -0.0 713,782 - ABIE51_RS03220 0.78 +0.2 713,782 - ABIE51_RS03220 0.78 +0.2 713,782 - ABIE51_RS03220 0.78 +0.2 713,782 - ABIE51_RS03220 0.78 +0.5 714,027 + +0.2 714,027 + -0.0 714,027 + +0.3 714,028 - -0.1 714,028 - -0.2 714,028 - +0.7 714,599 + ABIE51_RS03225 0.59 +0.7 714,599 + ABIE51_RS03225 0.59 -0.0 714,599 + ABIE51_RS03225 0.59 -0.3 714,600 - ABIE51_RS03225 0.59 +0.3 714,600 - ABIE51_RS03225 0.59 +0.1 714,842 + +0.4 714,842 + +0.4 714,842 + -0.1 714,842 + +0.9 714,842 + +0.1 714,843 - +1.2 714,843 - +0.3 714,843 - +0.2 714,843 - -0.2 714,843 - +0.2 714,843 - -0.3 714,843 - -0.2 714,843 - +0.1 714,843 - -0.5 714,843 - -0.3 714,927 + +0.3 714,927 + -0.2 714,927 + -0.1 714,927 + -0.3 714,927 + -0.4 714,927 + -0.8 714,927 + +0.8 714,945 + +0.2 714,945 + -0.3 715,365 + ABIE51_RS03230 0.34 -0.4 715,366 - ABIE51_RS03230 0.34 +0.8 715,689 + ABIE51_RS03230 0.59 +0.0
Or see this region's nucleotide sequence