Experiment: 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04529 and MPMX20_04530 are separated by 226 nucleotides MPMX20_04530 and MPMX20_04531 are separated by 2 nucleotides
MPMX20_04529: MPMX20_04529 - 5,10-methylenetetrahydrofolate reductase, at 4,740,736 to 4,741,626
_04529
MPMX20_04530: MPMX20_04530 - Bifunctional aspartokinase/homoserine dehydrogenase 2, at 4,741,853 to 4,744,285
_04530
MPMX20_04531: MPMX20_04531 - Cystathionine gamma-synthase, at 4,744,288 to 4,745,448
_04531
Position (kb)
4741
4742
4743
4744
4745 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 4740.937 kb on + strand, within MPMX20_04529 at 4741.029 kb on + strand, within MPMX20_04529 at 4741.070 kb on + strand, within MPMX20_04529 at 4741.088 kb on - strand, within MPMX20_04529 at 4741.093 kb on + strand, within MPMX20_04529 at 4741.134 kb on - strand, within MPMX20_04529 at 4741.163 kb on + strand, within MPMX20_04529 at 4741.164 kb on + strand, within MPMX20_04529 at 4741.213 kb on - strand, within MPMX20_04529 at 4741.317 kb on + strand, within MPMX20_04529 at 4741.320 kb on - strand, within MPMX20_04529 at 4741.360 kb on - strand, within MPMX20_04529 at 4741.363 kb on + strand, within MPMX20_04529 at 4741.365 kb on - strand, within MPMX20_04529 at 4741.365 kb on - strand, within MPMX20_04529 at 4741.408 kb on - strand, within MPMX20_04529 at 4741.421 kb on + strand, within MPMX20_04529 at 4741.488 kb on - strand, within MPMX20_04529 at 4741.506 kb on - strand, within MPMX20_04529 at 4741.595 kb on - strand at 4741.634 kb on - strand at 4741.763 kb on + strand at 4741.776 kb on - strand at 4741.809 kb on + strand at 4741.811 kb on - strand at 4741.816 kb on - strand at 4741.819 kb on + strand at 4741.827 kb on + strand at 4741.837 kb on - strand at 4742.011 kb on + strand at 4742.083 kb on - strand at 4742.083 kb on - strand at 4742.094 kb on - strand at 4742.134 kb on + strand, within MPMX20_04530 at 4742.137 kb on - strand, within MPMX20_04530 at 4742.305 kb on + strand, within MPMX20_04530 at 4742.305 kb on + strand, within MPMX20_04530 at 4742.449 kb on + strand, within MPMX20_04530 at 4742.449 kb on + strand, within MPMX20_04530 at 4742.449 kb on + strand, within MPMX20_04530 at 4742.449 kb on + strand, within MPMX20_04530 at 4742.457 kb on - strand, within MPMX20_04530 at 4742.457 kb on - strand, within MPMX20_04530 at 4742.457 kb on - strand, within MPMX20_04530 at 4742.457 kb on - strand, within MPMX20_04530 at 4742.457 kb on - strand, within MPMX20_04530 at 4742.457 kb on - strand, within MPMX20_04530 at 4742.457 kb on - strand, within MPMX20_04530 at 4742.492 kb on - strand, within MPMX20_04530 at 4742.542 kb on + strand, within MPMX20_04530 at 4742.542 kb on + strand, within MPMX20_04530 at 4742.637 kb on - strand, within MPMX20_04530 at 4742.662 kb on + strand, within MPMX20_04530 at 4742.671 kb on + strand, within MPMX20_04530 at 4742.679 kb on - strand, within MPMX20_04530 at 4742.708 kb on + strand, within MPMX20_04530 at 4742.718 kb on + strand, within MPMX20_04530 at 4742.718 kb on - strand, within MPMX20_04530 at 4742.748 kb on - strand, within MPMX20_04530 at 4742.748 kb on - strand, within MPMX20_04530 at 4742.761 kb on - strand, within MPMX20_04530 at 4742.794 kb on - strand, within MPMX20_04530 at 4742.860 kb on + strand, within MPMX20_04530 at 4742.860 kb on + strand, within MPMX20_04530 at 4742.868 kb on - strand, within MPMX20_04530 at 4742.868 kb on - strand, within MPMX20_04530 at 4742.868 kb on - strand, within MPMX20_04530 at 4742.907 kb on - strand, within MPMX20_04530 at 4742.930 kb on - strand, within MPMX20_04530 at 4742.936 kb on + strand, within MPMX20_04530 at 4742.946 kb on + strand, within MPMX20_04530 at 4742.970 kb on + strand, within MPMX20_04530 at 4742.988 kb on - strand, within MPMX20_04530 at 4743.080 kb on + strand, within MPMX20_04530 at 4743.085 kb on + strand, within MPMX20_04530 at 4743.127 kb on + strand, within MPMX20_04530 at 4743.203 kb on - strand, within MPMX20_04530 at 4743.256 kb on - strand, within MPMX20_04530 at 4743.331 kb on + strand, within MPMX20_04530 at 4743.390 kb on - strand, within MPMX20_04530 at 4743.395 kb on - strand, within MPMX20_04530 at 4743.405 kb on - strand, within MPMX20_04530 at 4743.423 kb on + strand, within MPMX20_04530 at 4743.431 kb on - strand, within MPMX20_04530 at 4743.568 kb on + strand, within MPMX20_04530 at 4743.573 kb on + strand, within MPMX20_04530 at 4743.573 kb on + strand, within MPMX20_04530 at 4743.576 kb on - strand, within MPMX20_04530 at 4743.576 kb on - strand, within MPMX20_04530 at 4743.576 kb on - strand, within MPMX20_04530 at 4743.576 kb on - strand, within MPMX20_04530 at 4743.635 kb on + strand, within MPMX20_04530 at 4743.645 kb on + strand, within MPMX20_04530 at 4743.653 kb on - strand, within MPMX20_04530 at 4743.653 kb on - strand, within MPMX20_04530 at 4743.660 kb on - strand, within MPMX20_04530 at 4743.666 kb on + strand, within MPMX20_04530 at 4743.674 kb on - strand, within MPMX20_04530 at 4743.718 kb on + strand, within MPMX20_04530 at 4743.726 kb on - strand, within MPMX20_04530 at 4743.726 kb on - strand, within MPMX20_04530 at 4743.770 kb on + strand, within MPMX20_04530 at 4743.773 kb on - strand, within MPMX20_04530 at 4743.784 kb on - strand, within MPMX20_04530 at 4743.829 kb on + strand, within MPMX20_04530 at 4743.837 kb on - strand, within MPMX20_04530 at 4743.841 kb on - strand, within MPMX20_04530 at 4743.896 kb on - strand, within MPMX20_04530 at 4743.901 kb on - strand, within MPMX20_04530 at 4743.917 kb on + strand, within MPMX20_04530 at 4743.917 kb on + strand, within MPMX20_04530 at 4743.917 kb on + strand, within MPMX20_04530 at 4743.917 kb on + strand, within MPMX20_04530 at 4743.917 kb on + strand, within MPMX20_04530 at 4743.921 kb on - strand, within MPMX20_04530 at 4743.925 kb on - strand, within MPMX20_04530 at 4744.058 kb on + strand at 4744.058 kb on + strand at 4744.058 kb on - strand at 4744.099 kb on + strand at 4744.107 kb on - strand at 4744.120 kb on + strand at 4744.157 kb on - strand at 4744.179 kb on + strand at 4744.187 kb on - strand at 4744.187 kb on - strand at 4744.208 kb on + strand at 4744.216 kb on - strand at 4744.254 kb on - strand at 4744.273 kb on - strand at 4744.285 kb on + strand at 4744.293 kb on - strand at 4744.293 kb on - strand at 4744.299 kb on - strand at 4744.355 kb on - strand at 4744.419 kb on - strand, within MPMX20_04531 at 4744.420 kb on + strand, within MPMX20_04531 at 4744.426 kb on + strand, within MPMX20_04531 at 4744.454 kb on - strand, within MPMX20_04531 at 4744.495 kb on - strand, within MPMX20_04531 at 4744.499 kb on - strand, within MPMX20_04531 at 4744.518 kb on + strand, within MPMX20_04531 at 4744.673 kb on + strand, within MPMX20_04531 at 4744.681 kb on - strand, within MPMX20_04531 at 4744.681 kb on - strand, within MPMX20_04531 at 4744.683 kb on + strand, within MPMX20_04531 at 4744.735 kb on + strand, within MPMX20_04531 at 4744.765 kb on - strand, within MPMX20_04531 at 4744.775 kb on + strand, within MPMX20_04531 at 4744.824 kb on - strand, within MPMX20_04531 at 4744.890 kb on + strand, within MPMX20_04531 at 4744.898 kb on - strand, within MPMX20_04531 at 4744.903 kb on + strand, within MPMX20_04531 at 4744.925 kb on + strand, within MPMX20_04531 at 4744.925 kb on + strand, within MPMX20_04531 at 4744.932 kb on + strand, within MPMX20_04531 at 4744.932 kb on + strand, within MPMX20_04531 at 4744.932 kb on - strand, within MPMX20_04531 at 4744.940 kb on - strand, within MPMX20_04531 at 4745.015 kb on + strand, within MPMX20_04531 at 4745.144 kb on + strand, within MPMX20_04531 at 4745.158 kb on - strand, within MPMX20_04531 at 4745.219 kb on + strand, within MPMX20_04531 at 4745.238 kb on - strand, within MPMX20_04531
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,740,937 + MPMX20_04529 0.23 +0.1 4,741,029 + MPMX20_04529 0.33 +0.5 4,741,070 + MPMX20_04529 0.37 +0.1 4,741,088 - MPMX20_04529 0.40 +0.4 4,741,093 + MPMX20_04529 0.40 -0.6 4,741,134 - MPMX20_04529 0.45 -1.3 4,741,163 + MPMX20_04529 0.48 +0.2 4,741,164 + MPMX20_04529 0.48 -0.1 4,741,213 - MPMX20_04529 0.54 -0.2 4,741,317 + MPMX20_04529 0.65 -0.0 4,741,320 - MPMX20_04529 0.66 -0.9 4,741,360 - MPMX20_04529 0.70 -0.4 4,741,363 + MPMX20_04529 0.70 -1.5 4,741,365 - MPMX20_04529 0.71 +2.0 4,741,365 - MPMX20_04529 0.71 +2.0 4,741,408 - MPMX20_04529 0.75 -0.0 4,741,421 + MPMX20_04529 0.77 +0.2 4,741,488 - MPMX20_04529 0.84 +2.4 4,741,506 - MPMX20_04529 0.86 -2.6 4,741,595 - -0.8 4,741,634 - +0.8 4,741,763 + +1.0 4,741,776 - -0.8 4,741,809 + +0.4 4,741,811 - +0.4 4,741,816 - +0.3 4,741,819 + +0.4 4,741,827 + +0.1 4,741,837 - +0.9 4,742,011 + -1.2 4,742,083 - +1.0 4,742,083 - +0.1 4,742,094 - -1.8 4,742,134 + MPMX20_04530 0.12 -1.0 4,742,137 - MPMX20_04530 0.12 -0.6 4,742,305 + MPMX20_04530 0.19 -3.6 4,742,305 + MPMX20_04530 0.19 -3.8 4,742,449 + MPMX20_04530 0.24 -0.7 4,742,449 + MPMX20_04530 0.24 -3.3 4,742,449 + MPMX20_04530 0.24 -3.4 4,742,449 + MPMX20_04530 0.24 -2.0 4,742,457 - MPMX20_04530 0.25 +1.0 4,742,457 - MPMX20_04530 0.25 -3.4 4,742,457 - MPMX20_04530 0.25 -2.7 4,742,457 - MPMX20_04530 0.25 -1.5 4,742,457 - MPMX20_04530 0.25 -3.4 4,742,457 - MPMX20_04530 0.25 -1.1 4,742,457 - MPMX20_04530 0.25 -1.0 4,742,492 - MPMX20_04530 0.26 -3.2 4,742,542 + MPMX20_04530 0.28 -1.1 4,742,542 + MPMX20_04530 0.28 -2.2 4,742,637 - MPMX20_04530 0.32 -0.4 4,742,662 + MPMX20_04530 0.33 -4.3 4,742,671 + MPMX20_04530 0.34 -3.7 4,742,679 - MPMX20_04530 0.34 -4.3 4,742,708 + MPMX20_04530 0.35 -2.9 4,742,718 + MPMX20_04530 0.36 -4.6 4,742,718 - MPMX20_04530 0.36 -2.7 4,742,748 - MPMX20_04530 0.37 -0.3 4,742,748 - MPMX20_04530 0.37 -3.4 4,742,761 - MPMX20_04530 0.37 -0.6 4,742,794 - MPMX20_04530 0.39 -3.8 4,742,860 + MPMX20_04530 0.41 -3.7 4,742,860 + MPMX20_04530 0.41 -2.3 4,742,868 - MPMX20_04530 0.42 -1.6 4,742,868 - MPMX20_04530 0.42 +0.1 4,742,868 - MPMX20_04530 0.42 +0.6 4,742,907 - MPMX20_04530 0.43 +1.0 4,742,930 - MPMX20_04530 0.44 -0.4 4,742,936 + MPMX20_04530 0.45 -2.5 4,742,946 + MPMX20_04530 0.45 -4.2 4,742,970 + MPMX20_04530 0.46 -0.2 4,742,988 - MPMX20_04530 0.47 -4.6 4,743,080 + MPMX20_04530 0.50 -2.3 4,743,085 + MPMX20_04530 0.51 -2.8 4,743,127 + MPMX20_04530 0.52 -3.7 4,743,203 - MPMX20_04530 0.55 -4.0 4,743,256 - MPMX20_04530 0.58 -5.8 4,743,331 + MPMX20_04530 0.61 -2.5 4,743,390 - MPMX20_04530 0.63 -2.8 4,743,395 - MPMX20_04530 0.63 -3.8 4,743,405 - MPMX20_04530 0.64 -3.6 4,743,423 + MPMX20_04530 0.65 -2.2 4,743,431 - MPMX20_04530 0.65 -6.3 4,743,568 + MPMX20_04530 0.70 -4.5 4,743,573 + MPMX20_04530 0.71 -1.8 4,743,573 + MPMX20_04530 0.71 -1.2 4,743,576 - MPMX20_04530 0.71 -1.6 4,743,576 - MPMX20_04530 0.71 -4.4 4,743,576 - MPMX20_04530 0.71 -3.1 4,743,576 - MPMX20_04530 0.71 -3.2 4,743,635 + MPMX20_04530 0.73 -0.5 4,743,645 + MPMX20_04530 0.74 -2.6 4,743,653 - MPMX20_04530 0.74 -3.7 4,743,653 - MPMX20_04530 0.74 -0.3 4,743,660 - MPMX20_04530 0.74 -4.4 4,743,666 + MPMX20_04530 0.75 -3.7 4,743,674 - MPMX20_04530 0.75 -1.5 4,743,718 + MPMX20_04530 0.77 -4.1 4,743,726 - MPMX20_04530 0.77 -3.6 4,743,726 - MPMX20_04530 0.77 -0.8 4,743,770 + MPMX20_04530 0.79 -2.7 4,743,773 - MPMX20_04530 0.79 +0.4 4,743,784 - MPMX20_04530 0.79 -0.6 4,743,829 + MPMX20_04530 0.81 -3.3 4,743,837 - MPMX20_04530 0.82 -4.0 4,743,841 - MPMX20_04530 0.82 -5.8 4,743,896 - MPMX20_04530 0.84 -3.9 4,743,901 - MPMX20_04530 0.84 -2.3 4,743,917 + MPMX20_04530 0.85 -3.7 4,743,917 + MPMX20_04530 0.85 -1.9 4,743,917 + MPMX20_04530 0.85 -4.5 4,743,917 + MPMX20_04530 0.85 -4.7 4,743,917 + MPMX20_04530 0.85 -2.9 4,743,921 - MPMX20_04530 0.85 -3.5 4,743,925 - MPMX20_04530 0.85 -1.0 4,744,058 + -4.3 4,744,058 + -3.3 4,744,058 - -5.1 4,744,099 + -5.2 4,744,107 - -2.0 4,744,120 + -0.6 4,744,157 - -1.7 4,744,179 + -1.3 4,744,187 - -5.8 4,744,187 - -2.8 4,744,208 + -0.6 4,744,216 - -3.2 4,744,254 - -1.8 4,744,273 - -4.8 4,744,285 + -0.6 4,744,293 - +0.4 4,744,293 - -0.0 4,744,299 - -3.1 4,744,355 - +3.0 4,744,419 - MPMX20_04531 0.11 +0.5 4,744,420 + MPMX20_04531 0.11 +0.0 4,744,426 + MPMX20_04531 0.12 +0.2 4,744,454 - MPMX20_04531 0.14 -0.3 4,744,495 - MPMX20_04531 0.18 -0.5 4,744,499 - MPMX20_04531 0.18 -1.1 4,744,518 + MPMX20_04531 0.20 -0.3 4,744,673 + MPMX20_04531 0.33 +5.7 4,744,681 - MPMX20_04531 0.34 -0.0 4,744,681 - MPMX20_04531 0.34 -1.0 4,744,683 + MPMX20_04531 0.34 -1.1 4,744,735 + MPMX20_04531 0.39 -0.3 4,744,765 - MPMX20_04531 0.41 -1.1 4,744,775 + MPMX20_04531 0.42 +0.1 4,744,824 - MPMX20_04531 0.46 +0.1 4,744,890 + MPMX20_04531 0.52 +2.6 4,744,898 - MPMX20_04531 0.53 +0.3 4,744,903 + MPMX20_04531 0.53 +1.7 4,744,925 + MPMX20_04531 0.55 -0.0 4,744,925 + MPMX20_04531 0.55 -1.0 4,744,932 + MPMX20_04531 0.55 +1.6 4,744,932 + MPMX20_04531 0.55 -1.2 4,744,932 - MPMX20_04531 0.55 +0.7 4,744,940 - MPMX20_04531 0.56 -0.8 4,745,015 + MPMX20_04531 0.63 +1.4 4,745,144 + MPMX20_04531 0.74 -1.2 4,745,158 - MPMX20_04531 0.75 -1.3 4,745,219 + MPMX20_04531 0.80 +0.7 4,745,238 - MPMX20_04531 0.82 +1.5
Or see this region's nucleotide sequence