Experiment: 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04372 and MPMX20_04373 are separated by 2 nucleotides MPMX20_04373 and MPMX20_04374 overlap by 44 nucleotides MPMX20_04374 and MPMX20_04375 overlap by 4 nucleotides MPMX20_04375 and MPMX20_04376 overlap by 4 nucleotides
MPMX20_04372: MPMX20_04372 - 3-oxoacyl-[acyl-carrier-protein] synthase 2, at 4,563,162 to 4,564,391
_04372
MPMX20_04373: MPMX20_04373 - hypothetical protein, at 4,564,394 to 4,564,987
_04373
MPMX20_04374: MPMX20_04374 - putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF, at 4,564,944 to 4,565,348
_04374
MPMX20_04375: MPMX20_04375 - putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 4,565,345 to 4,565,683
_04375
MPMX20_04376: MPMX20_04376 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 4,565,680 to 4,567,335
_04376
Position (kb)
4565
4566 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 4564.401 kb on + strand at 4564.409 kb on - strand at 4564.431 kb on + strand at 4564.462 kb on + strand, within MPMX20_04373 at 4564.469 kb on + strand, within MPMX20_04373 at 4564.506 kb on - strand, within MPMX20_04373 at 4564.552 kb on + strand, within MPMX20_04373 at 4564.552 kb on + strand, within MPMX20_04373 at 4564.552 kb on + strand, within MPMX20_04373 at 4564.602 kb on + strand, within MPMX20_04373 at 4564.610 kb on - strand, within MPMX20_04373 at 4564.699 kb on - strand, within MPMX20_04373 at 4564.711 kb on + strand, within MPMX20_04373 at 4564.753 kb on - strand, within MPMX20_04373 at 4564.815 kb on + strand, within MPMX20_04373 at 4564.911 kb on + strand, within MPMX20_04373 at 4564.911 kb on + strand, within MPMX20_04373 at 4564.926 kb on + strand, within MPMX20_04373 at 4564.934 kb on + strand at 4564.934 kb on - strand at 4564.935 kb on + strand at 4564.942 kb on - strand at 4565.080 kb on + strand, within MPMX20_04374 at 4565.112 kb on + strand, within MPMX20_04374 at 4565.112 kb on + strand, within MPMX20_04374 at 4565.120 kb on - strand, within MPMX20_04374 at 4565.127 kb on - strand, within MPMX20_04374 at 4565.139 kb on + strand, within MPMX20_04374 at 4565.278 kb on + strand, within MPMX20_04374 at 4565.312 kb on + strand at 4565.312 kb on + strand at 4565.315 kb on - strand at 4565.320 kb on - strand at 4565.320 kb on - strand at 4565.322 kb on + strand at 4565.330 kb on - strand at 4565.350 kb on + strand at 4565.357 kb on + strand at 4565.426 kb on + strand, within MPMX20_04375 at 4565.454 kb on - strand, within MPMX20_04375 at 4565.473 kb on + strand, within MPMX20_04375 at 4565.476 kb on - strand, within MPMX20_04375 at 4565.481 kb on - strand, within MPMX20_04375 at 4565.496 kb on + strand, within MPMX20_04375 at 4565.504 kb on - strand, within MPMX20_04375 at 4565.506 kb on + strand, within MPMX20_04375 at 4565.545 kb on - strand, within MPMX20_04375 at 4565.551 kb on + strand, within MPMX20_04375 at 4565.575 kb on - strand, within MPMX20_04375 at 4565.577 kb on - strand, within MPMX20_04375 at 4565.607 kb on + strand, within MPMX20_04375 at 4565.617 kb on + strand, within MPMX20_04375 at 4565.627 kb on + strand, within MPMX20_04375 at 4565.627 kb on + strand, within MPMX20_04375 at 4565.632 kb on + strand, within MPMX20_04375 at 4565.635 kb on - strand, within MPMX20_04375 at 4565.640 kb on - strand, within MPMX20_04375 at 4565.640 kb on - strand, within MPMX20_04375 at 4565.642 kb on + strand, within MPMX20_04375 at 4565.642 kb on + strand, within MPMX20_04375 at 4565.659 kb on + strand at 4565.675 kb on + strand at 4565.677 kb on - strand at 4565.690 kb on + strand at 4565.704 kb on + strand at 4565.704 kb on + strand at 4565.713 kb on + strand at 4565.739 kb on - strand at 4565.739 kb on - strand at 4565.813 kb on + strand at 4565.827 kb on - strand at 4565.892 kb on + strand, within MPMX20_04376 at 4565.936 kb on + strand, within MPMX20_04376 at 4565.945 kb on + strand, within MPMX20_04376 at 4565.984 kb on - strand, within MPMX20_04376 at 4565.989 kb on + strand, within MPMX20_04376 at 4565.997 kb on - strand, within MPMX20_04376 at 4566.019 kb on - strand, within MPMX20_04376 at 4566.041 kb on - strand, within MPMX20_04376 at 4566.041 kb on - strand, within MPMX20_04376 at 4566.052 kb on - strand, within MPMX20_04376 at 4566.100 kb on - strand, within MPMX20_04376 at 4566.169 kb on + strand, within MPMX20_04376 at 4566.169 kb on + strand, within MPMX20_04376 at 4566.169 kb on + strand, within MPMX20_04376 at 4566.177 kb on - strand, within MPMX20_04376 at 4566.179 kb on + strand, within MPMX20_04376 at 4566.188 kb on + strand, within MPMX20_04376 at 4566.206 kb on - strand, within MPMX20_04376 at 4566.217 kb on - strand, within MPMX20_04376 at 4566.240 kb on - strand, within MPMX20_04376 at 4566.311 kb on + strand, within MPMX20_04376 at 4566.312 kb on - strand, within MPMX20_04376 at 4566.320 kb on + strand, within MPMX20_04376 at 4566.356 kb on + strand, within MPMX20_04376 at 4566.377 kb on - strand, within MPMX20_04376 at 4566.384 kb on + strand, within MPMX20_04376 at 4566.385 kb on + strand, within MPMX20_04376 at 4566.392 kb on - strand, within MPMX20_04376 at 4566.584 kb on + strand, within MPMX20_04376 at 4566.592 kb on - strand, within MPMX20_04376 at 4566.597 kb on - strand, within MPMX20_04376 at 4566.597 kb on - strand, within MPMX20_04376 at 4566.656 kb on + strand, within MPMX20_04376 at 4566.662 kb on - strand, within MPMX20_04376 at 4566.664 kb on - strand, within MPMX20_04376 at 4566.668 kb on + strand, within MPMX20_04376 at 4566.668 kb on + strand, within MPMX20_04376 at 4566.681 kb on - strand, within MPMX20_04376
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,564,401 + +0.4 4,564,409 - -0.8 4,564,431 + -2.1 4,564,462 + MPMX20_04373 0.11 -1.5 4,564,469 + MPMX20_04373 0.13 -0.3 4,564,506 - MPMX20_04373 0.19 +2.5 4,564,552 + MPMX20_04373 0.27 -0.9 4,564,552 + MPMX20_04373 0.27 -0.2 4,564,552 + MPMX20_04373 0.27 -0.6 4,564,602 + MPMX20_04373 0.35 +2.9 4,564,610 - MPMX20_04373 0.36 +2.7 4,564,699 - MPMX20_04373 0.51 -0.9 4,564,711 + MPMX20_04373 0.53 -0.5 4,564,753 - MPMX20_04373 0.60 +0.9 4,564,815 + MPMX20_04373 0.71 +0.1 4,564,911 + MPMX20_04373 0.87 +1.1 4,564,911 + MPMX20_04373 0.87 -0.0 4,564,926 + MPMX20_04373 0.90 -0.4 4,564,934 + -1.2 4,564,934 - +0.9 4,564,935 + -0.4 4,564,942 - -1.1 4,565,080 + MPMX20_04374 0.34 -1.7 4,565,112 + MPMX20_04374 0.41 -3.7 4,565,112 + MPMX20_04374 0.41 -1.5 4,565,120 - MPMX20_04374 0.43 -1.0 4,565,127 - MPMX20_04374 0.45 -1.7 4,565,139 + MPMX20_04374 0.48 -3.0 4,565,278 + MPMX20_04374 0.82 -2.9 4,565,312 + -2.9 4,565,312 + -0.7 4,565,315 - -2.8 4,565,320 - -2.0 4,565,320 - -2.0 4,565,322 + -3.8 4,565,330 - -3.1 4,565,350 + -2.9 4,565,357 + -1.1 4,565,426 + MPMX20_04375 0.24 -2.0 4,565,454 - MPMX20_04375 0.32 -1.2 4,565,473 + MPMX20_04375 0.38 -2.0 4,565,476 - MPMX20_04375 0.39 -2.0 4,565,481 - MPMX20_04375 0.40 -1.9 4,565,496 + MPMX20_04375 0.45 +0.9 4,565,504 - MPMX20_04375 0.47 -2.2 4,565,506 + MPMX20_04375 0.47 -2.1 4,565,545 - MPMX20_04375 0.59 -2.4 4,565,551 + MPMX20_04375 0.61 -3.8 4,565,575 - MPMX20_04375 0.68 -1.2 4,565,577 - MPMX20_04375 0.68 -3.8 4,565,607 + MPMX20_04375 0.77 -2.2 4,565,617 + MPMX20_04375 0.80 -2.1 4,565,627 + MPMX20_04375 0.83 -0.9 4,565,627 + MPMX20_04375 0.83 -1.1 4,565,632 + MPMX20_04375 0.85 -3.0 4,565,635 - MPMX20_04375 0.86 -2.5 4,565,640 - MPMX20_04375 0.87 -1.0 4,565,640 - MPMX20_04375 0.87 -3.2 4,565,642 + MPMX20_04375 0.88 -3.1 4,565,642 + MPMX20_04375 0.88 -3.5 4,565,659 + -0.4 4,565,675 + +0.6 4,565,677 - -1.6 4,565,690 + -0.6 4,565,704 + -2.4 4,565,704 + -2.1 4,565,713 + -0.7 4,565,739 - -0.7 4,565,739 - -0.5 4,565,813 + -2.2 4,565,827 - -1.0 4,565,892 + MPMX20_04376 0.13 -0.3 4,565,936 + MPMX20_04376 0.15 -1.2 4,565,945 + MPMX20_04376 0.16 +0.1 4,565,984 - MPMX20_04376 0.18 -2.0 4,565,989 + MPMX20_04376 0.19 +0.3 4,565,997 - MPMX20_04376 0.19 -1.4 4,566,019 - MPMX20_04376 0.20 -0.3 4,566,041 - MPMX20_04376 0.22 -0.9 4,566,041 - MPMX20_04376 0.22 -0.8 4,566,052 - MPMX20_04376 0.22 -1.0 4,566,100 - MPMX20_04376 0.25 +1.6 4,566,169 + MPMX20_04376 0.30 -0.6 4,566,169 + MPMX20_04376 0.30 -1.3 4,566,169 + MPMX20_04376 0.30 -1.6 4,566,177 - MPMX20_04376 0.30 -0.1 4,566,179 + MPMX20_04376 0.30 +0.4 4,566,188 + MPMX20_04376 0.31 -0.1 4,566,206 - MPMX20_04376 0.32 -0.9 4,566,217 - MPMX20_04376 0.32 -1.4 4,566,240 - MPMX20_04376 0.34 -0.1 4,566,311 + MPMX20_04376 0.38 +1.5 4,566,312 - MPMX20_04376 0.38 -1.8 4,566,320 + MPMX20_04376 0.39 -2.1 4,566,356 + MPMX20_04376 0.41 -0.9 4,566,377 - MPMX20_04376 0.42 -1.3 4,566,384 + MPMX20_04376 0.43 -0.8 4,566,385 + MPMX20_04376 0.43 -0.3 4,566,392 - MPMX20_04376 0.43 +0.9 4,566,584 + MPMX20_04376 0.55 -0.9 4,566,592 - MPMX20_04376 0.55 +0.4 4,566,597 - MPMX20_04376 0.55 +1.4 4,566,597 - MPMX20_04376 0.55 -0.1 4,566,656 + MPMX20_04376 0.59 +0.4 4,566,662 - MPMX20_04376 0.59 +0.6 4,566,664 - MPMX20_04376 0.59 -1.3 4,566,668 + MPMX20_04376 0.60 -0.7 4,566,668 + MPMX20_04376 0.60 -0.6 4,566,681 - MPMX20_04376 0.60 -0.1
Or see this region's nucleotide sequence