Experiment: 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03343 and MPMX20_03344 are separated by 221 nucleotides MPMX20_03344 and MPMX20_03345 are separated by 18 nucleotides MPMX20_03345 and MPMX20_03346 overlap by 4 nucleotides
MPMX20_03343: MPMX20_03343 - Putative transport protein YhhT, at 3,515,930 to 3,516,994
_03343
MPMX20_03344: MPMX20_03344 - Beta-barrel assembly-enhancing protease, at 3,517,216 to 3,518,679
_03344
MPMX20_03345: MPMX20_03345 - putative protein YfgD, at 3,518,698 to 3,519,054
_03345
MPMX20_03346: MPMX20_03346 - hypothetical protein, at 3,519,051 to 3,519,875
_03346
Position (kb)
3517
3518
3519 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3516.225 kb on - strand, within MPMX20_03343 at 3516.274 kb on + strand, within MPMX20_03343 at 3516.274 kb on + strand, within MPMX20_03343 at 3516.374 kb on - strand, within MPMX20_03343 at 3516.390 kb on - strand, within MPMX20_03343 at 3516.395 kb on - strand, within MPMX20_03343 at 3516.429 kb on - strand, within MPMX20_03343 at 3516.575 kb on - strand, within MPMX20_03343 at 3516.628 kb on + strand, within MPMX20_03343 at 3516.719 kb on + strand, within MPMX20_03343 at 3516.826 kb on + strand, within MPMX20_03343 at 3516.834 kb on - strand, within MPMX20_03343 at 3516.934 kb on + strand at 3516.942 kb on + strand at 3516.943 kb on + strand at 3516.998 kb on + strand at 3516.998 kb on + strand at 3517.031 kb on + strand at 3517.124 kb on + strand at 3517.146 kb on + strand at 3517.192 kb on - strand at 3517.200 kb on + strand at 3517.208 kb on - strand at 3517.217 kb on + strand at 3517.278 kb on + strand at 3517.286 kb on - strand at 3517.320 kb on + strand at 3517.328 kb on - strand at 3517.349 kb on + strand at 3517.349 kb on + strand at 3517.349 kb on + strand at 3517.357 kb on - strand at 3517.357 kb on - strand at 3517.395 kb on + strand, within MPMX20_03344 at 3517.421 kb on + strand, within MPMX20_03344 at 3517.458 kb on + strand, within MPMX20_03344 at 3517.620 kb on - strand, within MPMX20_03344 at 3517.644 kb on + strand, within MPMX20_03344 at 3517.652 kb on - strand, within MPMX20_03344 at 3517.685 kb on - strand, within MPMX20_03344 at 3517.687 kb on + strand, within MPMX20_03344 at 3517.692 kb on + strand, within MPMX20_03344 at 3517.695 kb on - strand, within MPMX20_03344 at 3517.761 kb on + strand, within MPMX20_03344 at 3517.769 kb on - strand, within MPMX20_03344 at 3517.783 kb on + strand, within MPMX20_03344 at 3517.791 kb on - strand, within MPMX20_03344 at 3517.791 kb on - strand, within MPMX20_03344 at 3517.838 kb on + strand, within MPMX20_03344 at 3517.861 kb on + strand, within MPMX20_03344 at 3517.869 kb on + strand, within MPMX20_03344 at 3517.869 kb on + strand, within MPMX20_03344 at 3518.067 kb on + strand, within MPMX20_03344 at 3518.075 kb on - strand, within MPMX20_03344 at 3518.238 kb on - strand, within MPMX20_03344 at 3518.352 kb on + strand, within MPMX20_03344 at 3518.359 kb on - strand, within MPMX20_03344 at 3518.381 kb on - strand, within MPMX20_03344 at 3518.450 kb on + strand, within MPMX20_03344 at 3518.462 kb on - strand, within MPMX20_03344 at 3518.529 kb on - strand, within MPMX20_03344 at 3518.532 kb on + strand, within MPMX20_03344 at 3518.583 kb on + strand at 3518.595 kb on - strand at 3518.597 kb on + strand at 3518.642 kb on + strand at 3518.642 kb on - strand at 3518.654 kb on + strand at 3518.654 kb on + strand at 3518.654 kb on + strand at 3518.662 kb on - strand at 3518.662 kb on - strand at 3518.662 kb on - strand at 3518.662 kb on - strand at 3518.662 kb on - strand at 3518.662 kb on - strand at 3518.735 kb on + strand, within MPMX20_03345 at 3518.753 kb on + strand, within MPMX20_03345 at 3518.753 kb on + strand, within MPMX20_03345 at 3518.753 kb on + strand, within MPMX20_03345 at 3518.753 kb on + strand, within MPMX20_03345 at 3518.753 kb on + strand, within MPMX20_03345 at 3518.753 kb on + strand, within MPMX20_03345 at 3518.761 kb on - strand, within MPMX20_03345 at 3518.761 kb on - strand, within MPMX20_03345 at 3518.761 kb on - strand, within MPMX20_03345 at 3518.761 kb on - strand, within MPMX20_03345 at 3518.761 kb on - strand, within MPMX20_03345 at 3518.761 kb on - strand, within MPMX20_03345 at 3518.785 kb on - strand, within MPMX20_03345 at 3518.824 kb on + strand, within MPMX20_03345 at 3518.872 kb on - strand, within MPMX20_03345 at 3518.895 kb on + strand, within MPMX20_03345 at 3518.895 kb on + strand, within MPMX20_03345 at 3518.896 kb on - strand, within MPMX20_03345 at 3518.906 kb on - strand, within MPMX20_03345 at 3518.941 kb on + strand, within MPMX20_03345 at 3519.048 kb on + strand at 3519.049 kb on + strand at 3519.180 kb on - strand, within MPMX20_03346 at 3519.213 kb on - strand, within MPMX20_03346 at 3519.220 kb on + strand, within MPMX20_03346 at 3519.327 kb on - strand, within MPMX20_03346 at 3519.375 kb on + strand, within MPMX20_03346 at 3519.375 kb on + strand, within MPMX20_03346 at 3519.396 kb on + strand, within MPMX20_03346 at 3519.594 kb on + strand, within MPMX20_03346 at 3519.646 kb on + strand, within MPMX20_03346 at 3519.656 kb on + strand, within MPMX20_03346
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,516,225 - MPMX20_03343 0.28 +1.3 3,516,274 + MPMX20_03343 0.32 +2.7 3,516,274 + MPMX20_03343 0.32 +0.1 3,516,374 - MPMX20_03343 0.42 -0.9 3,516,390 - MPMX20_03343 0.43 -1.1 3,516,395 - MPMX20_03343 0.44 -1.0 3,516,429 - MPMX20_03343 0.47 +2.1 3,516,575 - MPMX20_03343 0.61 +0.0 3,516,628 + MPMX20_03343 0.66 -0.2 3,516,719 + MPMX20_03343 0.74 +0.5 3,516,826 + MPMX20_03343 0.84 -0.1 3,516,834 - MPMX20_03343 0.85 +0.5 3,516,934 + -2.0 3,516,942 + -0.4 3,516,943 + +0.3 3,516,998 + -1.5 3,516,998 + -0.1 3,517,031 + +2.7 3,517,124 + -0.4 3,517,146 + -2.0 3,517,192 - -0.3 3,517,200 + +2.3 3,517,208 - +0.3 3,517,217 + +0.1 3,517,278 + +1.0 3,517,286 - -0.5 3,517,320 + -0.4 3,517,328 - -1.6 3,517,349 + -1.7 3,517,349 + -2.8 3,517,349 + -0.6 3,517,357 - -0.9 3,517,357 - -1.3 3,517,395 + MPMX20_03344 0.12 -2.8 3,517,421 + MPMX20_03344 0.14 -1.7 3,517,458 + MPMX20_03344 0.17 +0.5 3,517,620 - MPMX20_03344 0.28 -0.6 3,517,644 + MPMX20_03344 0.29 -2.1 3,517,652 - MPMX20_03344 0.30 +0.4 3,517,685 - MPMX20_03344 0.32 -1.5 3,517,687 + MPMX20_03344 0.32 -0.9 3,517,692 + MPMX20_03344 0.33 +1.0 3,517,695 - MPMX20_03344 0.33 -0.7 3,517,761 + MPMX20_03344 0.37 -2.1 3,517,769 - MPMX20_03344 0.38 -1.8 3,517,783 + MPMX20_03344 0.39 -1.9 3,517,791 - MPMX20_03344 0.39 -1.3 3,517,791 - MPMX20_03344 0.39 -0.4 3,517,838 + MPMX20_03344 0.42 +0.3 3,517,861 + MPMX20_03344 0.44 -1.7 3,517,869 + MPMX20_03344 0.45 -1.9 3,517,869 + MPMX20_03344 0.45 -2.1 3,518,067 + MPMX20_03344 0.58 -1.4 3,518,075 - MPMX20_03344 0.59 -0.7 3,518,238 - MPMX20_03344 0.70 -0.4 3,518,352 + MPMX20_03344 0.78 -1.7 3,518,359 - MPMX20_03344 0.78 -1.0 3,518,381 - MPMX20_03344 0.80 -2.0 3,518,450 + MPMX20_03344 0.84 +0.5 3,518,462 - MPMX20_03344 0.85 -0.6 3,518,529 - MPMX20_03344 0.90 -1.4 3,518,532 + MPMX20_03344 0.90 +0.1 3,518,583 + -0.1 3,518,595 - -0.5 3,518,597 + -1.3 3,518,642 + -0.8 3,518,642 - -0.5 3,518,654 + -0.1 3,518,654 + +0.1 3,518,654 + +1.5 3,518,662 - +0.8 3,518,662 - +3.1 3,518,662 - -0.9 3,518,662 - +1.3 3,518,662 - -0.5 3,518,662 - +0.3 3,518,735 + MPMX20_03345 0.10 +1.3 3,518,753 + MPMX20_03345 0.15 +1.7 3,518,753 + MPMX20_03345 0.15 +0.3 3,518,753 + MPMX20_03345 0.15 +0.4 3,518,753 + MPMX20_03345 0.15 -0.2 3,518,753 + MPMX20_03345 0.15 +0.9 3,518,753 + MPMX20_03345 0.15 -0.3 3,518,761 - MPMX20_03345 0.18 -0.5 3,518,761 - MPMX20_03345 0.18 -1.8 3,518,761 - MPMX20_03345 0.18 +0.6 3,518,761 - MPMX20_03345 0.18 -0.7 3,518,761 - MPMX20_03345 0.18 +1.1 3,518,761 - MPMX20_03345 0.18 -0.9 3,518,785 - MPMX20_03345 0.24 -0.4 3,518,824 + MPMX20_03345 0.35 -1.6 3,518,872 - MPMX20_03345 0.49 +1.1 3,518,895 + MPMX20_03345 0.55 +0.9 3,518,895 + MPMX20_03345 0.55 +0.6 3,518,896 - MPMX20_03345 0.55 -0.5 3,518,906 - MPMX20_03345 0.58 -0.2 3,518,941 + MPMX20_03345 0.68 -0.2 3,519,048 + +1.3 3,519,049 + +0.4 3,519,180 - MPMX20_03346 0.16 +1.1 3,519,213 - MPMX20_03346 0.20 +1.2 3,519,220 + MPMX20_03346 0.20 -0.4 3,519,327 - MPMX20_03346 0.33 -0.2 3,519,375 + MPMX20_03346 0.39 +2.7 3,519,375 + MPMX20_03346 0.39 -0.9 3,519,396 + MPMX20_03346 0.42 +0.5 3,519,594 + MPMX20_03346 0.66 -0.1 3,519,646 + MPMX20_03346 0.72 -1.1 3,519,656 + MPMX20_03346 0.73 -1.2
Or see this region's nucleotide sequence