Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03344

Experiment: 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03343 and MPMX20_03344 are separated by 221 nucleotidesMPMX20_03344 and MPMX20_03345 are separated by 18 nucleotidesMPMX20_03345 and MPMX20_03346 overlap by 4 nucleotides MPMX20_03343: MPMX20_03343 - Putative transport protein YhhT, at 3,515,930 to 3,516,994 _03343 MPMX20_03344: MPMX20_03344 - Beta-barrel assembly-enhancing protease, at 3,517,216 to 3,518,679 _03344 MPMX20_03345: MPMX20_03345 - putative protein YfgD, at 3,518,698 to 3,519,054 _03345 MPMX20_03346: MPMX20_03346 - hypothetical protein, at 3,519,051 to 3,519,875 _03346 Position (kb) 3517 3518 3519Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3516.225 kb on - strand, within MPMX20_03343at 3516.274 kb on + strand, within MPMX20_03343at 3516.274 kb on + strand, within MPMX20_03343at 3516.374 kb on - strand, within MPMX20_03343at 3516.390 kb on - strand, within MPMX20_03343at 3516.395 kb on - strand, within MPMX20_03343at 3516.429 kb on - strand, within MPMX20_03343at 3516.575 kb on - strand, within MPMX20_03343at 3516.628 kb on + strand, within MPMX20_03343at 3516.719 kb on + strand, within MPMX20_03343at 3516.826 kb on + strand, within MPMX20_03343at 3516.834 kb on - strand, within MPMX20_03343at 3516.934 kb on + strandat 3516.942 kb on + strandat 3516.943 kb on + strandat 3516.998 kb on + strandat 3516.998 kb on + strandat 3517.031 kb on + strandat 3517.124 kb on + strandat 3517.146 kb on + strandat 3517.192 kb on - strandat 3517.200 kb on + strandat 3517.208 kb on - strandat 3517.217 kb on + strandat 3517.278 kb on + strandat 3517.286 kb on - strandat 3517.320 kb on + strandat 3517.328 kb on - strandat 3517.349 kb on + strandat 3517.349 kb on + strandat 3517.349 kb on + strandat 3517.357 kb on - strandat 3517.357 kb on - strandat 3517.395 kb on + strand, within MPMX20_03344at 3517.421 kb on + strand, within MPMX20_03344at 3517.458 kb on + strand, within MPMX20_03344at 3517.620 kb on - strand, within MPMX20_03344at 3517.644 kb on + strand, within MPMX20_03344at 3517.652 kb on - strand, within MPMX20_03344at 3517.685 kb on - strand, within MPMX20_03344at 3517.687 kb on + strand, within MPMX20_03344at 3517.692 kb on + strand, within MPMX20_03344at 3517.695 kb on - strand, within MPMX20_03344at 3517.761 kb on + strand, within MPMX20_03344at 3517.769 kb on - strand, within MPMX20_03344at 3517.783 kb on + strand, within MPMX20_03344at 3517.791 kb on - strand, within MPMX20_03344at 3517.791 kb on - strand, within MPMX20_03344at 3517.838 kb on + strand, within MPMX20_03344at 3517.861 kb on + strand, within MPMX20_03344at 3517.869 kb on + strand, within MPMX20_03344at 3517.869 kb on + strand, within MPMX20_03344at 3518.067 kb on + strand, within MPMX20_03344at 3518.075 kb on - strand, within MPMX20_03344at 3518.238 kb on - strand, within MPMX20_03344at 3518.352 kb on + strand, within MPMX20_03344at 3518.359 kb on - strand, within MPMX20_03344at 3518.381 kb on - strand, within MPMX20_03344at 3518.450 kb on + strand, within MPMX20_03344at 3518.462 kb on - strand, within MPMX20_03344at 3518.529 kb on - strand, within MPMX20_03344at 3518.532 kb on + strand, within MPMX20_03344at 3518.583 kb on + strandat 3518.595 kb on - strandat 3518.597 kb on + strandat 3518.642 kb on + strandat 3518.642 kb on - strandat 3518.654 kb on + strandat 3518.654 kb on + strandat 3518.654 kb on + strandat 3518.662 kb on - strandat 3518.662 kb on - strandat 3518.662 kb on - strandat 3518.662 kb on - strandat 3518.662 kb on - strandat 3518.662 kb on - strandat 3518.735 kb on + strand, within MPMX20_03345at 3518.753 kb on + strand, within MPMX20_03345at 3518.753 kb on + strand, within MPMX20_03345at 3518.753 kb on + strand, within MPMX20_03345at 3518.753 kb on + strand, within MPMX20_03345at 3518.753 kb on + strand, within MPMX20_03345at 3518.753 kb on + strand, within MPMX20_03345at 3518.761 kb on - strand, within MPMX20_03345at 3518.761 kb on - strand, within MPMX20_03345at 3518.761 kb on - strand, within MPMX20_03345at 3518.761 kb on - strand, within MPMX20_03345at 3518.761 kb on - strand, within MPMX20_03345at 3518.761 kb on - strand, within MPMX20_03345at 3518.785 kb on - strand, within MPMX20_03345at 3518.824 kb on + strand, within MPMX20_03345at 3518.872 kb on - strand, within MPMX20_03345at 3518.895 kb on + strand, within MPMX20_03345at 3518.895 kb on + strand, within MPMX20_03345at 3518.896 kb on - strand, within MPMX20_03345at 3518.906 kb on - strand, within MPMX20_03345at 3518.941 kb on + strand, within MPMX20_03345at 3519.048 kb on + strandat 3519.049 kb on + strandat 3519.180 kb on - strand, within MPMX20_03346at 3519.213 kb on - strand, within MPMX20_03346at 3519.220 kb on + strand, within MPMX20_03346at 3519.327 kb on - strand, within MPMX20_03346at 3519.375 kb on + strand, within MPMX20_03346at 3519.375 kb on + strand, within MPMX20_03346at 3519.396 kb on + strand, within MPMX20_03346at 3519.594 kb on + strand, within MPMX20_03346at 3519.646 kb on + strand, within MPMX20_03346at 3519.656 kb on + strand, within MPMX20_03346

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
3,516,225 - MPMX20_03343 0.28 +1.3
3,516,274 + MPMX20_03343 0.32 +2.7
3,516,274 + MPMX20_03343 0.32 +0.1
3,516,374 - MPMX20_03343 0.42 -0.9
3,516,390 - MPMX20_03343 0.43 -1.1
3,516,395 - MPMX20_03343 0.44 -1.0
3,516,429 - MPMX20_03343 0.47 +2.1
3,516,575 - MPMX20_03343 0.61 +0.0
3,516,628 + MPMX20_03343 0.66 -0.2
3,516,719 + MPMX20_03343 0.74 +0.5
3,516,826 + MPMX20_03343 0.84 -0.1
3,516,834 - MPMX20_03343 0.85 +0.5
3,516,934 + -2.0
3,516,942 + -0.4
3,516,943 + +0.3
3,516,998 + -1.5
3,516,998 + -0.1
3,517,031 + +2.7
3,517,124 + -0.4
3,517,146 + -2.0
3,517,192 - -0.3
3,517,200 + +2.3
3,517,208 - +0.3
3,517,217 + +0.1
3,517,278 + +1.0
3,517,286 - -0.5
3,517,320 + -0.4
3,517,328 - -1.6
3,517,349 + -1.7
3,517,349 + -2.8
3,517,349 + -0.6
3,517,357 - -0.9
3,517,357 - -1.3
3,517,395 + MPMX20_03344 0.12 -2.8
3,517,421 + MPMX20_03344 0.14 -1.7
3,517,458 + MPMX20_03344 0.17 +0.5
3,517,620 - MPMX20_03344 0.28 -0.6
3,517,644 + MPMX20_03344 0.29 -2.1
3,517,652 - MPMX20_03344 0.30 +0.4
3,517,685 - MPMX20_03344 0.32 -1.5
3,517,687 + MPMX20_03344 0.32 -0.9
3,517,692 + MPMX20_03344 0.33 +1.0
3,517,695 - MPMX20_03344 0.33 -0.7
3,517,761 + MPMX20_03344 0.37 -2.1
3,517,769 - MPMX20_03344 0.38 -1.8
3,517,783 + MPMX20_03344 0.39 -1.9
3,517,791 - MPMX20_03344 0.39 -1.3
3,517,791 - MPMX20_03344 0.39 -0.4
3,517,838 + MPMX20_03344 0.42 +0.3
3,517,861 + MPMX20_03344 0.44 -1.7
3,517,869 + MPMX20_03344 0.45 -1.9
3,517,869 + MPMX20_03344 0.45 -2.1
3,518,067 + MPMX20_03344 0.58 -1.4
3,518,075 - MPMX20_03344 0.59 -0.7
3,518,238 - MPMX20_03344 0.70 -0.4
3,518,352 + MPMX20_03344 0.78 -1.7
3,518,359 - MPMX20_03344 0.78 -1.0
3,518,381 - MPMX20_03344 0.80 -2.0
3,518,450 + MPMX20_03344 0.84 +0.5
3,518,462 - MPMX20_03344 0.85 -0.6
3,518,529 - MPMX20_03344 0.90 -1.4
3,518,532 + MPMX20_03344 0.90 +0.1
3,518,583 + -0.1
3,518,595 - -0.5
3,518,597 + -1.3
3,518,642 + -0.8
3,518,642 - -0.5
3,518,654 + -0.1
3,518,654 + +0.1
3,518,654 + +1.5
3,518,662 - +0.8
3,518,662 - +3.1
3,518,662 - -0.9
3,518,662 - +1.3
3,518,662 - -0.5
3,518,662 - +0.3
3,518,735 + MPMX20_03345 0.10 +1.3
3,518,753 + MPMX20_03345 0.15 +1.7
3,518,753 + MPMX20_03345 0.15 +0.3
3,518,753 + MPMX20_03345 0.15 +0.4
3,518,753 + MPMX20_03345 0.15 -0.2
3,518,753 + MPMX20_03345 0.15 +0.9
3,518,753 + MPMX20_03345 0.15 -0.3
3,518,761 - MPMX20_03345 0.18 -0.5
3,518,761 - MPMX20_03345 0.18 -1.8
3,518,761 - MPMX20_03345 0.18 +0.6
3,518,761 - MPMX20_03345 0.18 -0.7
3,518,761 - MPMX20_03345 0.18 +1.1
3,518,761 - MPMX20_03345 0.18 -0.9
3,518,785 - MPMX20_03345 0.24 -0.4
3,518,824 + MPMX20_03345 0.35 -1.6
3,518,872 - MPMX20_03345 0.49 +1.1
3,518,895 + MPMX20_03345 0.55 +0.9
3,518,895 + MPMX20_03345 0.55 +0.6
3,518,896 - MPMX20_03345 0.55 -0.5
3,518,906 - MPMX20_03345 0.58 -0.2
3,518,941 + MPMX20_03345 0.68 -0.2
3,519,048 + +1.3
3,519,049 + +0.4
3,519,180 - MPMX20_03346 0.16 +1.1
3,519,213 - MPMX20_03346 0.20 +1.2
3,519,220 + MPMX20_03346 0.20 -0.4
3,519,327 - MPMX20_03346 0.33 -0.2
3,519,375 + MPMX20_03346 0.39 +2.7
3,519,375 + MPMX20_03346 0.39 -0.9
3,519,396 + MPMX20_03346 0.42 +0.5
3,519,594 + MPMX20_03346 0.66 -0.1
3,519,646 + MPMX20_03346 0.72 -1.1
3,519,656 + MPMX20_03346 0.73 -1.2

Or see this region's nucleotide sequence