Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03217

Experiment: 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03216 and MPMX20_03217 are separated by 89 nucleotidesMPMX20_03217 and MPMX20_03218 are separated by 15 nucleotides MPMX20_03216: MPMX20_03216 - NADH-quinone oxidoreductase subunit C/D, at 3,387,011 to 3,388,813 _03216 MPMX20_03217: MPMX20_03217 - NADH-quinone oxidoreductase subunit B, at 3,388,903 to 3,389,577 _03217 MPMX20_03218: MPMX20_03218 - NAD(P)H-quinone oxidoreductase subunit 3, at 3,389,593 to 3,390,033 _03218 Position (kb) 3388 3389 3390Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3387.919 kb on + strand, within MPMX20_03216at 3387.985 kb on + strand, within MPMX20_03216at 3388.014 kb on - strand, within MPMX20_03216at 3388.035 kb on + strand, within MPMX20_03216at 3388.080 kb on - strand, within MPMX20_03216at 3388.098 kb on + strand, within MPMX20_03216at 3388.163 kb on - strand, within MPMX20_03216at 3388.213 kb on + strand, within MPMX20_03216at 3388.213 kb on + strand, within MPMX20_03216at 3388.320 kb on + strand, within MPMX20_03216at 3388.320 kb on + strand, within MPMX20_03216at 3388.333 kb on - strand, within MPMX20_03216at 3388.351 kb on + strand, within MPMX20_03216at 3388.400 kb on + strand, within MPMX20_03216at 3388.471 kb on - strand, within MPMX20_03216at 3388.475 kb on + strand, within MPMX20_03216at 3388.488 kb on + strand, within MPMX20_03216at 3388.488 kb on + strand, within MPMX20_03216at 3388.500 kb on + strand, within MPMX20_03216at 3388.553 kb on - strand, within MPMX20_03216at 3388.553 kb on - strand, within MPMX20_03216at 3388.559 kb on + strand, within MPMX20_03216at 3388.661 kb on - strandat 3388.664 kb on + strandat 3388.719 kb on + strandat 3388.751 kb on - strandat 3388.797 kb on + strandat 3388.876 kb on + strandat 3388.876 kb on + strandat 3388.876 kb on + strandat 3388.881 kb on + strandat 3388.884 kb on - strandat 3388.916 kb on + strandat 3389.007 kb on + strand, within MPMX20_03217at 3389.007 kb on + strand, within MPMX20_03217at 3389.009 kb on + strand, within MPMX20_03217at 3389.017 kb on - strand, within MPMX20_03217at 3389.017 kb on - strand, within MPMX20_03217at 3389.109 kb on - strand, within MPMX20_03217at 3389.137 kb on + strand, within MPMX20_03217at 3389.147 kb on + strand, within MPMX20_03217at 3389.165 kb on + strand, within MPMX20_03217at 3389.286 kb on - strand, within MPMX20_03217at 3389.308 kb on + strand, within MPMX20_03217at 3389.316 kb on - strand, within MPMX20_03217at 3389.481 kb on - strand, within MPMX20_03217at 3389.509 kb on - strand, within MPMX20_03217at 3389.525 kb on + strandat 3389.553 kb on - strandat 3389.553 kb on - strandat 3389.678 kb on - strand, within MPMX20_03218at 3389.692 kb on - strand, within MPMX20_03218at 3389.692 kb on - strand, within MPMX20_03218at 3389.861 kb on - strand, within MPMX20_03218at 3389.897 kb on - strand, within MPMX20_03218at 3389.897 kb on - strand, within MPMX20_03218at 3389.953 kb on + strand, within MPMX20_03218at 3389.953 kb on + strand, within MPMX20_03218at 3389.956 kb on - strand, within MPMX20_03218at 3389.995 kb on + strandat 3390.009 kb on + strandat 3390.009 kb on + strandat 3390.029 kb on + strandat 3390.057 kb on - strandat 3390.067 kb on + strandat 3390.125 kb on - strandat 3390.258 kb on + strandat 3390.258 kb on + strandat 3390.264 kb on + strandat 3390.265 kb on - strandat 3390.273 kb on + strandat 3390.273 kb on + strandat 3390.459 kb on + strandat 3390.459 kb on + strandat 3390.466 kb on - strandat 3390.467 kb on - strandat 3390.470 kb on + strandat 3390.470 kb on + strandat 3390.478 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,387,919 + MPMX20_03216 0.50 -1.3
3,387,985 + MPMX20_03216 0.54 -0.5
3,388,014 - MPMX20_03216 0.56 -2.9
3,388,035 + MPMX20_03216 0.57 -0.7
3,388,080 - MPMX20_03216 0.59 -3.3
3,388,098 + MPMX20_03216 0.60 +0.1
3,388,163 - MPMX20_03216 0.64 -0.2
3,388,213 + MPMX20_03216 0.67 -3.4
3,388,213 + MPMX20_03216 0.67 -0.7
3,388,320 + MPMX20_03216 0.73 +0.1
3,388,320 + MPMX20_03216 0.73 -2.0
3,388,333 - MPMX20_03216 0.73 -2.0
3,388,351 + MPMX20_03216 0.74 +0.1
3,388,400 + MPMX20_03216 0.77 -2.3
3,388,471 - MPMX20_03216 0.81 +0.5
3,388,475 + MPMX20_03216 0.81 +0.5
3,388,488 + MPMX20_03216 0.82 -1.4
3,388,488 + MPMX20_03216 0.82 -3.8
3,388,500 + MPMX20_03216 0.83 +0.1
3,388,553 - MPMX20_03216 0.86 -1.0
3,388,553 - MPMX20_03216 0.86 -0.3
3,388,559 + MPMX20_03216 0.86 -0.7
3,388,661 - -1.1
3,388,664 + -1.1
3,388,719 + -0.5
3,388,751 - -0.9
3,388,797 + +0.1
3,388,876 + -0.3
3,388,876 + -2.7
3,388,876 + -0.1
3,388,881 + -0.7
3,388,884 - -2.5
3,388,916 + +1.1
3,389,007 + MPMX20_03217 0.15 -0.7
3,389,007 + MPMX20_03217 0.15 -1.7
3,389,009 + MPMX20_03217 0.16 +0.1
3,389,017 - MPMX20_03217 0.17 -1.3
3,389,017 - MPMX20_03217 0.17 -1.5
3,389,109 - MPMX20_03217 0.31 +2.1
3,389,137 + MPMX20_03217 0.35 -2.5
3,389,147 + MPMX20_03217 0.36 +0.5
3,389,165 + MPMX20_03217 0.39 -1.6
3,389,286 - MPMX20_03217 0.57 -1.8
3,389,308 + MPMX20_03217 0.60 -0.5
3,389,316 - MPMX20_03217 0.61 +0.5
3,389,481 - MPMX20_03217 0.86 -0.3
3,389,509 - MPMX20_03217 0.90 -1.1
3,389,525 + -1.5
3,389,553 - +0.5
3,389,553 - +1.1
3,389,678 - MPMX20_03218 0.19 +2.1
3,389,692 - MPMX20_03218 0.22 +1.1
3,389,692 - MPMX20_03218 0.22 -0.1
3,389,861 - MPMX20_03218 0.61 -0.5
3,389,897 - MPMX20_03218 0.69 -2.2
3,389,897 - MPMX20_03218 0.69 -0.9
3,389,953 + MPMX20_03218 0.82 -0.6
3,389,953 + MPMX20_03218 0.82 -2.6
3,389,956 - MPMX20_03218 0.82 -1.3
3,389,995 + -0.5
3,390,009 + -0.9
3,390,009 + -0.5
3,390,029 + +1.1
3,390,057 - -0.5
3,390,067 + -1.8
3,390,125 - -1.6
3,390,258 + -2.6
3,390,258 + -2.6
3,390,264 + -2.3
3,390,265 - +0.2
3,390,273 + -0.7
3,390,273 + -1.4
3,390,459 + +0.1
3,390,459 + +1.2
3,390,466 - -0.7
3,390,467 - +0.2
3,390,470 + -1.8
3,390,470 + +0.2
3,390,478 - +0.5

Or see this region's nucleotide sequence