Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00980

Experiment: 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_00978 and MPMX20_00979 are separated by 44 nucleotidesMPMX20_00979 and MPMX20_00980 are separated by 231 nucleotidesMPMX20_00980 and MPMX20_00981 are separated by 71 nucleotidesMPMX20_00981 and MPMX20_00982 are separated by 45 nucleotides MPMX20_00978: MPMX20_00978 - Shikimate kinase 2, at 1,029,548 to 1,030,072 _00978 MPMX20_00979: MPMX20_00979 - putative protein YaiA, at 1,030,117 to 1,030,308 _00979 MPMX20_00980: MPMX20_00980 - hypothetical protein, at 1,030,540 to 1,031,223 _00980 MPMX20_00981: MPMX20_00981 - Pyrimidine/purine nucleoside phosphorylase, at 1,031,295 to 1,031,582 _00981 MPMX20_00982: MPMX20_00982 - Recombination-associated protein RdgC, at 1,031,628 to 1,032,542 _00982 Position (kb) 1030 1031 1032Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1029.611 kb on - strand, within MPMX20_00978at 1029.704 kb on + strand, within MPMX20_00978at 1029.801 kb on + strand, within MPMX20_00978at 1029.802 kb on + strand, within MPMX20_00978at 1029.804 kb on - strand, within MPMX20_00978at 1029.844 kb on + strand, within MPMX20_00978at 1029.876 kb on - strand, within MPMX20_00978at 1029.918 kb on + strand, within MPMX20_00978at 1029.933 kb on + strand, within MPMX20_00978at 1029.933 kb on + strand, within MPMX20_00978at 1029.941 kb on - strand, within MPMX20_00978at 1029.941 kb on - strand, within MPMX20_00978at 1029.953 kb on - strand, within MPMX20_00978at 1029.968 kb on + strand, within MPMX20_00978at 1029.968 kb on + strand, within MPMX20_00978at 1029.968 kb on + strand, within MPMX20_00978at 1029.968 kb on + strand, within MPMX20_00978at 1029.968 kb on + strand, within MPMX20_00978at 1030.051 kb on + strandat 1030.051 kb on + strandat 1030.085 kb on - strandat 1030.154 kb on + strand, within MPMX20_00979at 1030.196 kb on + strand, within MPMX20_00979at 1030.196 kb on + strand, within MPMX20_00979at 1030.218 kb on + strand, within MPMX20_00979at 1030.226 kb on - strand, within MPMX20_00979at 1030.226 kb on - strand, within MPMX20_00979at 1030.226 kb on - strand, within MPMX20_00979at 1030.226 kb on - strand, within MPMX20_00979at 1030.226 kb on - strand, within MPMX20_00979at 1030.230 kb on - strand, within MPMX20_00979at 1030.245 kb on + strand, within MPMX20_00979at 1030.348 kb on + strandat 1030.448 kb on + strandat 1030.448 kb on + strandat 1030.456 kb on - strandat 1030.484 kb on + strandat 1030.494 kb on - strandat 1030.494 kb on - strandat 1030.494 kb on - strandat 1030.500 kb on + strandat 1030.500 kb on + strandat 1030.500 kb on + strandat 1030.500 kb on + strandat 1030.500 kb on + strandat 1030.508 kb on - strandat 1030.508 kb on - strandat 1030.508 kb on - strandat 1030.518 kb on + strandat 1030.571 kb on + strandat 1030.605 kb on - strandat 1030.605 kb on - strandat 1030.650 kb on - strand, within MPMX20_00980at 1030.650 kb on - strand, within MPMX20_00980at 1030.651 kb on - strand, within MPMX20_00980at 1030.685 kb on - strand, within MPMX20_00980at 1030.696 kb on + strand, within MPMX20_00980at 1030.838 kb on + strand, within MPMX20_00980at 1030.838 kb on + strand, within MPMX20_00980at 1030.846 kb on - strand, within MPMX20_00980at 1030.846 kb on - strand, within MPMX20_00980at 1030.931 kb on + strand, within MPMX20_00980at 1030.965 kb on + strand, within MPMX20_00980at 1031.033 kb on - strand, within MPMX20_00980at 1031.033 kb on - strand, within MPMX20_00980at 1031.033 kb on - strand, within MPMX20_00980at 1031.058 kb on + strand, within MPMX20_00980at 1031.058 kb on + strand, within MPMX20_00980at 1031.058 kb on + strand, within MPMX20_00980at 1031.066 kb on - strand, within MPMX20_00980at 1031.077 kb on + strand, within MPMX20_00980at 1031.114 kb on + strand, within MPMX20_00980at 1031.114 kb on + strand, within MPMX20_00980at 1031.114 kb on + strand, within MPMX20_00980at 1031.114 kb on + strand, within MPMX20_00980at 1031.114 kb on + strand, within MPMX20_00980at 1031.114 kb on + strand, within MPMX20_00980at 1031.114 kb on + strand, within MPMX20_00980at 1031.122 kb on - strand, within MPMX20_00980at 1031.122 kb on - strand, within MPMX20_00980at 1031.122 kb on - strand, within MPMX20_00980at 1031.177 kb on + strandat 1031.178 kb on - strandat 1031.248 kb on - strandat 1031.340 kb on + strand, within MPMX20_00981at 1031.351 kb on + strand, within MPMX20_00981at 1031.361 kb on + strand, within MPMX20_00981at 1031.369 kb on - strand, within MPMX20_00981at 1031.379 kb on - strand, within MPMX20_00981at 1031.394 kb on + strand, within MPMX20_00981at 1031.433 kb on + strand, within MPMX20_00981at 1031.512 kb on + strand, within MPMX20_00981at 1031.512 kb on + strand, within MPMX20_00981at 1031.520 kb on - strand, within MPMX20_00981at 1031.520 kb on - strand, within MPMX20_00981at 1031.562 kb on - strandat 1031.602 kb on - strandat 1031.602 kb on - strandat 1031.612 kb on - strandat 1031.626 kb on - strandat 1031.632 kb on - strandat 1031.634 kb on - strandat 1031.765 kb on + strand, within MPMX20_00982at 1031.853 kb on - strand, within MPMX20_00982at 1031.866 kb on + strand, within MPMX20_00982at 1031.927 kb on - strand, within MPMX20_00982at 1031.976 kb on + strand, within MPMX20_00982at 1031.976 kb on + strand, within MPMX20_00982at 1031.984 kb on - strand, within MPMX20_00982at 1031.984 kb on - strand, within MPMX20_00982at 1031.985 kb on - strand, within MPMX20_00982at 1031.987 kb on + strand, within MPMX20_00982at 1032.124 kb on + strand, within MPMX20_00982at 1032.132 kb on - strand, within MPMX20_00982at 1032.184 kb on - strand, within MPMX20_00982at 1032.184 kb on - strand, within MPMX20_00982

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,029,611 - MPMX20_00978 0.12 +0.2
1,029,704 + MPMX20_00978 0.30 +1.0
1,029,801 + MPMX20_00978 0.48 +0.4
1,029,802 + MPMX20_00978 0.48 +2.4
1,029,804 - MPMX20_00978 0.49 +0.5
1,029,844 + MPMX20_00978 0.56 -0.7
1,029,876 - MPMX20_00978 0.62 +0.2
1,029,918 + MPMX20_00978 0.70 -0.8
1,029,933 + MPMX20_00978 0.73 -0.7
1,029,933 + MPMX20_00978 0.73 +0.3
1,029,941 - MPMX20_00978 0.75 +1.4
1,029,941 - MPMX20_00978 0.75 +0.0
1,029,953 - MPMX20_00978 0.77 -0.3
1,029,968 + MPMX20_00978 0.80 +0.8
1,029,968 + MPMX20_00978 0.80 +0.6
1,029,968 + MPMX20_00978 0.80 -0.5
1,029,968 + MPMX20_00978 0.80 -1.1
1,029,968 + MPMX20_00978 0.80 -0.3
1,030,051 + -0.3
1,030,051 + +0.2
1,030,085 - +1.1
1,030,154 + MPMX20_00979 0.19 -1.3
1,030,196 + MPMX20_00979 0.41 -0.2
1,030,196 + MPMX20_00979 0.41 +0.1
1,030,218 + MPMX20_00979 0.53 -0.3
1,030,226 - MPMX20_00979 0.57 -1.4
1,030,226 - MPMX20_00979 0.57 -0.7
1,030,226 - MPMX20_00979 0.57 +0.8
1,030,226 - MPMX20_00979 0.57 -1.0
1,030,226 - MPMX20_00979 0.57 -1.8
1,030,230 - MPMX20_00979 0.59 -0.6
1,030,245 + MPMX20_00979 0.67 +1.0
1,030,348 + -3.1
1,030,448 + +1.4
1,030,448 + +1.0
1,030,456 - -0.8
1,030,484 + -2.6
1,030,494 - -1.6
1,030,494 - -0.3
1,030,494 - -1.5
1,030,500 + +1.0
1,030,500 + -1.6
1,030,500 + -0.7
1,030,500 + -1.8
1,030,500 + -2.6
1,030,508 - -1.5
1,030,508 - -1.7
1,030,508 - -1.0
1,030,518 + -1.4
1,030,571 + -1.1
1,030,605 - -2.2
1,030,605 - -0.4
1,030,650 - MPMX20_00980 0.16 -1.2
1,030,650 - MPMX20_00980 0.16 -2.5
1,030,651 - MPMX20_00980 0.16 -2.0
1,030,685 - MPMX20_00980 0.21 -1.3
1,030,696 + MPMX20_00980 0.23 +1.0
1,030,838 + MPMX20_00980 0.44 -3.2
1,030,838 + MPMX20_00980 0.44 -2.3
1,030,846 - MPMX20_00980 0.45 -1.1
1,030,846 - MPMX20_00980 0.45 -1.6
1,030,931 + MPMX20_00980 0.57 -0.9
1,030,965 + MPMX20_00980 0.62 -0.8
1,031,033 - MPMX20_00980 0.72 -0.2
1,031,033 - MPMX20_00980 0.72 -1.3
1,031,033 - MPMX20_00980 0.72 -2.2
1,031,058 + MPMX20_00980 0.76 -0.8
1,031,058 + MPMX20_00980 0.76 -0.9
1,031,058 + MPMX20_00980 0.76 +2.0
1,031,066 - MPMX20_00980 0.77 +1.0
1,031,077 + MPMX20_00980 0.79 +0.0
1,031,114 + MPMX20_00980 0.84 -2.4
1,031,114 + MPMX20_00980 0.84 -1.4
1,031,114 + MPMX20_00980 0.84 -1.3
1,031,114 + MPMX20_00980 0.84 +1.6
1,031,114 + MPMX20_00980 0.84 -1.5
1,031,114 + MPMX20_00980 0.84 +0.2
1,031,114 + MPMX20_00980 0.84 -0.3
1,031,122 - MPMX20_00980 0.85 -1.0
1,031,122 - MPMX20_00980 0.85 +0.0
1,031,122 - MPMX20_00980 0.85 +0.0
1,031,177 + -1.9
1,031,178 - +0.0
1,031,248 - -0.4
1,031,340 + MPMX20_00981 0.16 +0.4
1,031,351 + MPMX20_00981 0.19 +1.8
1,031,361 + MPMX20_00981 0.23 -1.6
1,031,369 - MPMX20_00981 0.26 -0.5
1,031,379 - MPMX20_00981 0.29 -1.3
1,031,394 + MPMX20_00981 0.34 -0.3
1,031,433 + MPMX20_00981 0.48 +1.5
1,031,512 + MPMX20_00981 0.75 -0.8
1,031,512 + MPMX20_00981 0.75 +1.0
1,031,520 - MPMX20_00981 0.78 -0.3
1,031,520 - MPMX20_00981 0.78 +0.3
1,031,562 - -0.8
1,031,602 - -2.2
1,031,602 - -0.8
1,031,612 - -3.6
1,031,626 - +0.0
1,031,632 - +0.4
1,031,634 - -2.0
1,031,765 + MPMX20_00982 0.15 -0.2
1,031,853 - MPMX20_00982 0.25 -0.6
1,031,866 + MPMX20_00982 0.26 +1.1
1,031,927 - MPMX20_00982 0.33 -0.9
1,031,976 + MPMX20_00982 0.38 +0.2
1,031,976 + MPMX20_00982 0.38 -0.2
1,031,984 - MPMX20_00982 0.39 -0.5
1,031,984 - MPMX20_00982 0.39 -1.6
1,031,985 - MPMX20_00982 0.39 +1.2
1,031,987 + MPMX20_00982 0.39 +0.4
1,032,124 + MPMX20_00982 0.54 +0.4
1,032,132 - MPMX20_00982 0.55 +1.4
1,032,184 - MPMX20_00982 0.61 +1.6
1,032,184 - MPMX20_00982 0.61 +2.3

Or see this region's nucleotide sequence