Experiment: 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00811 and MPMX20_00812 are separated by 412 nucleotides MPMX20_00812 and MPMX20_00813 are separated by 188 nucleotides MPMX20_00813 and MPMX20_00814 are separated by 31 nucleotides
MPMX20_00811: MPMX20_00811 - hypothetical protein, at 851,401 to 852,930
_00811
MPMX20_00812: MPMX20_00812 - Aconitate hydratase B, at 853,343 to 855,940
_00812
MPMX20_00813: MPMX20_00813 - hypothetical protein, at 856,129 to 856,491
_00813
MPMX20_00814: MPMX20_00814 - S-adenosylmethionine decarboxylase proenzyme, at 856,523 to 857,317
_00814
Position (kb) 853
854
855
856 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 852.461 kb on + strand, within MPMX20_00811 at 852.461 kb on + strand, within MPMX20_00811 at 852.469 kb on - strand, within MPMX20_00811 at 852.567 kb on + strand, within MPMX20_00811 at 852.589 kb on + strand, within MPMX20_00811 at 852.598 kb on - strand, within MPMX20_00811 at 852.623 kb on - strand, within MPMX20_00811 at 852.723 kb on - strand, within MPMX20_00811 at 852.879 kb on + strand at 852.879 kb on + strand at 852.879 kb on + strand at 852.879 kb on + strand at 852.887 kb on - strand at 852.955 kb on - strand at 852.959 kb on + strand at 852.959 kb on + strand at 852.967 kb on + strand at 852.975 kb on - strand at 853.016 kb on - strand at 853.112 kb on + strand at 853.112 kb on - strand at 853.212 kb on + strand at 853.212 kb on + strand at 853.212 kb on + strand at 853.212 kb on + strand at 853.212 kb on + strand at 853.220 kb on - strand at 853.220 kb on - strand at 853.220 kb on - strand at 853.220 kb on - strand at 853.261 kb on + strand at 853.290 kb on - strand at 853.499 kb on + strand at 853.502 kb on - strand at 853.502 kb on - strand at 853.572 kb on + strand at 853.575 kb on + strand at 853.609 kb on + strand, within MPMX20_00812 at 853.609 kb on + strand, within MPMX20_00812 at 853.609 kb on + strand, within MPMX20_00812 at 853.614 kb on + strand, within MPMX20_00812 at 853.622 kb on - strand, within MPMX20_00812 at 853.709 kb on + strand, within MPMX20_00812 at 853.709 kb on - strand, within MPMX20_00812 at 853.726 kb on + strand, within MPMX20_00812 at 853.734 kb on - strand, within MPMX20_00812 at 853.734 kb on - strand, within MPMX20_00812 at 853.794 kb on - strand, within MPMX20_00812 at 853.794 kb on - strand, within MPMX20_00812 at 853.818 kb on + strand, within MPMX20_00812 at 853.826 kb on - strand, within MPMX20_00812 at 853.826 kb on - strand, within MPMX20_00812 at 853.826 kb on - strand, within MPMX20_00812 at 853.826 kb on - strand, within MPMX20_00812 at 853.989 kb on + strand, within MPMX20_00812 at 853.989 kb on + strand, within MPMX20_00812 at 853.997 kb on - strand, within MPMX20_00812 at 853.997 kb on - strand, within MPMX20_00812 at 853.997 kb on - strand, within MPMX20_00812 at 854.105 kb on - strand, within MPMX20_00812 at 854.154 kb on + strand, within MPMX20_00812 at 854.162 kb on - strand, within MPMX20_00812 at 854.283 kb on - strand, within MPMX20_00812 at 854.399 kb on - strand, within MPMX20_00812 at 854.454 kb on - strand, within MPMX20_00812 at 854.533 kb on + strand, within MPMX20_00812 at 854.589 kb on + strand, within MPMX20_00812 at 854.615 kb on - strand, within MPMX20_00812 at 854.638 kb on - strand, within MPMX20_00812 at 854.651 kb on - strand, within MPMX20_00812 at 854.710 kb on + strand, within MPMX20_00812 at 854.721 kb on - strand, within MPMX20_00812 at 854.766 kb on - strand, within MPMX20_00812 at 854.814 kb on - strand, within MPMX20_00812 at 854.970 kb on + strand, within MPMX20_00812 at 854.970 kb on + strand, within MPMX20_00812 at 854.978 kb on - strand, within MPMX20_00812 at 854.980 kb on + strand, within MPMX20_00812 at 855.180 kb on - strand, within MPMX20_00812 at 855.283 kb on - strand, within MPMX20_00812 at 855.321 kb on - strand, within MPMX20_00812 at 855.383 kb on + strand, within MPMX20_00812 at 855.596 kb on + strand, within MPMX20_00812 at 855.621 kb on + strand, within MPMX20_00812 at 855.655 kb on + strand, within MPMX20_00812 at 855.655 kb on + strand, within MPMX20_00812 at 855.655 kb on + strand, within MPMX20_00812 at 855.718 kb on - strand at 855.741 kb on + strand at 855.817 kb on + strand at 855.817 kb on + strand at 855.953 kb on + strand at 855.987 kb on + strand at 855.987 kb on + strand at 855.987 kb on + strand at 855.995 kb on - strand at 855.995 kb on - strand at 856.005 kb on - strand at 856.009 kb on + strand at 856.011 kb on - strand at 856.011 kb on - strand at 856.026 kb on + strand at 856.026 kb on + strand at 856.026 kb on + strand at 856.034 kb on - strand at 856.034 kb on - strand at 856.034 kb on - strand at 856.057 kb on + strand at 856.127 kb on - strand at 856.198 kb on + strand, within MPMX20_00813 at 856.342 kb on - strand, within MPMX20_00813 at 856.401 kb on - strand, within MPMX20_00813 at 856.401 kb on - strand, within MPMX20_00813 at 856.401 kb on - strand, within MPMX20_00813 at 856.406 kb on + strand, within MPMX20_00813 at 856.465 kb on + strand at 856.494 kb on + strand at 856.564 kb on + strand at 856.572 kb on - strand at 856.577 kb on - strand at 856.579 kb on + strand at 856.592 kb on - strand at 856.615 kb on - strand, within MPMX20_00814 at 856.633 kb on - strand, within MPMX20_00814 at 856.748 kb on + strand, within MPMX20_00814 at 856.758 kb on + strand, within MPMX20_00814 at 856.791 kb on + strand, within MPMX20_00814 at 856.804 kb on + strand, within MPMX20_00814 at 856.804 kb on + strand, within MPMX20_00814 at 856.866 kb on - strand, within MPMX20_00814 at 856.909 kb on - strand, within MPMX20_00814
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Streptomyces tendae SAI_182 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 852,461 + MPMX20_00811 0.69 -0.8 852,461 + MPMX20_00811 0.69 +0.1 852,469 - MPMX20_00811 0.70 -0.7 852,567 + MPMX20_00811 0.76 -0.7 852,589 + MPMX20_00811 0.78 +0.4 852,598 - MPMX20_00811 0.78 +1.0 852,623 - MPMX20_00811 0.80 +3.3 852,723 - MPMX20_00811 0.86 +0.7 852,879 + +0.2 852,879 + +2.6 852,879 + -1.0 852,879 + -0.4 852,887 - -0.8 852,955 - +1.3 852,959 + -0.1 852,959 + -0.8 852,967 + +2.0 852,975 - +0.8 853,016 - +0.2 853,112 + +0.5 853,112 - +0.7 853,212 + -0.3 853,212 + -0.6 853,212 + -0.3 853,212 + +1.6 853,212 + -0.9 853,220 - -0.2 853,220 - -1.4 853,220 - -1.5 853,220 - -1.5 853,261 + +0.2 853,290 - -0.0 853,499 + -0.6 853,502 - +0.4 853,502 - -1.5 853,572 + -0.3 853,575 + +1.0 853,609 + MPMX20_00812 0.10 +1.0 853,609 + MPMX20_00812 0.10 +1.0 853,609 + MPMX20_00812 0.10 +1.0 853,614 + MPMX20_00812 0.10 -0.8 853,622 - MPMX20_00812 0.11 -1.2 853,709 + MPMX20_00812 0.14 +1.0 853,709 - MPMX20_00812 0.14 -0.6 853,726 + MPMX20_00812 0.15 -1.8 853,734 - MPMX20_00812 0.15 +0.4 853,734 - MPMX20_00812 0.15 +0.4 853,794 - MPMX20_00812 0.17 -0.3 853,794 - MPMX20_00812 0.17 -1.0 853,818 + MPMX20_00812 0.18 +1.4 853,826 - MPMX20_00812 0.19 -0.8 853,826 - MPMX20_00812 0.19 -0.8 853,826 - MPMX20_00812 0.19 -1.0 853,826 - MPMX20_00812 0.19 -0.3 853,989 + MPMX20_00812 0.25 -0.8 853,989 + MPMX20_00812 0.25 -0.0 853,997 - MPMX20_00812 0.25 +0.4 853,997 - MPMX20_00812 0.25 -0.6 853,997 - MPMX20_00812 0.25 +0.2 854,105 - MPMX20_00812 0.29 -0.8 854,154 + MPMX20_00812 0.31 -0.6 854,162 - MPMX20_00812 0.32 +1.0 854,283 - MPMX20_00812 0.36 -0.0 854,399 - MPMX20_00812 0.41 -1.2 854,454 - MPMX20_00812 0.43 -1.3 854,533 + MPMX20_00812 0.46 +2.0 854,589 + MPMX20_00812 0.48 -1.0 854,615 - MPMX20_00812 0.49 -1.2 854,638 - MPMX20_00812 0.50 -0.6 854,651 - MPMX20_00812 0.50 -0.0 854,710 + MPMX20_00812 0.53 -0.3 854,721 - MPMX20_00812 0.53 -0.0 854,766 - MPMX20_00812 0.55 -0.6 854,814 - MPMX20_00812 0.57 -1.0 854,970 + MPMX20_00812 0.63 +2.0 854,970 + MPMX20_00812 0.63 -1.2 854,978 - MPMX20_00812 0.63 -0.3 854,980 + MPMX20_00812 0.63 -1.3 855,180 - MPMX20_00812 0.71 -0.6 855,283 - MPMX20_00812 0.75 -0.3 855,321 - MPMX20_00812 0.76 -0.0 855,383 + MPMX20_00812 0.79 -0.0 855,596 + MPMX20_00812 0.87 -0.3 855,621 + MPMX20_00812 0.88 +1.0 855,655 + MPMX20_00812 0.89 -1.7 855,655 + MPMX20_00812 0.89 -0.6 855,655 + MPMX20_00812 0.89 -0.0 855,718 - +0.4 855,741 + +1.0 855,817 + -1.6 855,817 + -2.2 855,953 + -0.3 855,987 + -1.5 855,987 + -0.2 855,987 + -1.3 855,995 - -1.5 855,995 - +0.4 856,005 - +0.4 856,009 + -0.0 856,011 - -1.5 856,011 - +0.4 856,026 + +0.1 856,026 + -1.7 856,026 + -0.6 856,034 - -0.9 856,034 - +0.4 856,034 - +0.0 856,057 + -0.0 856,127 - -0.0 856,198 + MPMX20_00813 0.19 +0.4 856,342 - MPMX20_00813 0.59 +0.2 856,401 - MPMX20_00813 0.75 +1.0 856,401 - MPMX20_00813 0.75 +0.3 856,401 - MPMX20_00813 0.75 -1.6 856,406 + MPMX20_00813 0.76 +0.2 856,465 + +0.1 856,494 + -1.7 856,564 + -1.0 856,572 - +1.0 856,577 - -1.7 856,579 + -1.3 856,592 - +0.5 856,615 - MPMX20_00814 0.12 +0.2 856,633 - MPMX20_00814 0.14 -1.2 856,748 + MPMX20_00814 0.28 +2.0 856,758 + MPMX20_00814 0.30 -2.4 856,791 + MPMX20_00814 0.34 +1.4 856,804 + MPMX20_00814 0.35 -0.3 856,804 + MPMX20_00814 0.35 +1.6 856,866 - MPMX20_00814 0.43 +0.3 856,909 - MPMX20_00814 0.49 -0.0
Or see this region's nucleotide sequence