Experiment: 0.1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04373 and MPMX20_04374 overlap by 44 nucleotides MPMX20_04374 and MPMX20_04375 overlap by 4 nucleotides MPMX20_04375 and MPMX20_04376 overlap by 4 nucleotides MPMX20_04376 and MPMX20_04377 overlap by 4 nucleotides MPMX20_04377 and MPMX20_04378 overlap by 4 nucleotides
MPMX20_04373: MPMX20_04373 - hypothetical protein, at 4,564,394 to 4,564,987
_04373
MPMX20_04374: MPMX20_04374 - putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF, at 4,564,944 to 4,565,348
_04374
MPMX20_04375: MPMX20_04375 - putative 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE, at 4,565,345 to 4,565,683
_04375
MPMX20_04376: MPMX20_04376 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 4,565,680 to 4,567,335
_04376
MPMX20_04377: MPMX20_04377 - putative 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, at 4,567,332 to 4,568,234
_04377
MPMX20_04378: MPMX20_04378 - Bifunctional polymyxin resistance protein ArnA, at 4,568,231 to 4,570,213
_04378
Position (kb)
4565
4566
4567
4568 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 4564.699 kb on - strand, within MPMX20_04373 at 4564.711 kb on + strand, within MPMX20_04373 at 4564.753 kb on - strand, within MPMX20_04373 at 4564.815 kb on + strand, within MPMX20_04373 at 4564.911 kb on + strand, within MPMX20_04373 at 4564.911 kb on + strand, within MPMX20_04373 at 4564.926 kb on + strand, within MPMX20_04373 at 4564.934 kb on + strand at 4564.934 kb on - strand at 4564.935 kb on + strand at 4564.942 kb on - strand at 4565.080 kb on + strand, within MPMX20_04374 at 4565.112 kb on + strand, within MPMX20_04374 at 4565.112 kb on + strand, within MPMX20_04374 at 4565.120 kb on - strand, within MPMX20_04374 at 4565.127 kb on - strand, within MPMX20_04374 at 4565.139 kb on + strand, within MPMX20_04374 at 4565.278 kb on + strand, within MPMX20_04374 at 4565.312 kb on + strand at 4565.312 kb on + strand at 4565.315 kb on - strand at 4565.320 kb on - strand at 4565.320 kb on - strand at 4565.322 kb on + strand at 4565.330 kb on - strand at 4565.350 kb on + strand at 4565.357 kb on + strand at 4565.426 kb on + strand, within MPMX20_04375 at 4565.454 kb on - strand, within MPMX20_04375 at 4565.473 kb on + strand, within MPMX20_04375 at 4565.476 kb on - strand, within MPMX20_04375 at 4565.481 kb on - strand, within MPMX20_04375 at 4565.496 kb on + strand, within MPMX20_04375 at 4565.504 kb on - strand, within MPMX20_04375 at 4565.506 kb on + strand, within MPMX20_04375 at 4565.545 kb on - strand, within MPMX20_04375 at 4565.551 kb on + strand, within MPMX20_04375 at 4565.575 kb on - strand, within MPMX20_04375 at 4565.577 kb on - strand, within MPMX20_04375 at 4565.607 kb on + strand, within MPMX20_04375 at 4565.617 kb on + strand, within MPMX20_04375 at 4565.627 kb on + strand, within MPMX20_04375 at 4565.627 kb on + strand, within MPMX20_04375 at 4565.632 kb on + strand, within MPMX20_04375 at 4565.635 kb on - strand, within MPMX20_04375 at 4565.640 kb on - strand, within MPMX20_04375 at 4565.640 kb on - strand, within MPMX20_04375 at 4565.642 kb on + strand, within MPMX20_04375 at 4565.642 kb on + strand, within MPMX20_04375 at 4565.659 kb on + strand at 4565.675 kb on + strand at 4565.677 kb on - strand at 4565.690 kb on + strand at 4565.704 kb on + strand at 4565.704 kb on + strand at 4565.713 kb on + strand at 4565.739 kb on - strand at 4565.739 kb on - strand at 4565.813 kb on + strand at 4565.827 kb on - strand at 4565.892 kb on + strand, within MPMX20_04376 at 4565.936 kb on + strand, within MPMX20_04376 at 4565.945 kb on + strand, within MPMX20_04376 at 4565.984 kb on - strand, within MPMX20_04376 at 4565.989 kb on + strand, within MPMX20_04376 at 4565.997 kb on - strand, within MPMX20_04376 at 4566.019 kb on - strand, within MPMX20_04376 at 4566.041 kb on - strand, within MPMX20_04376 at 4566.041 kb on - strand, within MPMX20_04376 at 4566.052 kb on - strand, within MPMX20_04376 at 4566.100 kb on - strand, within MPMX20_04376 at 4566.169 kb on + strand, within MPMX20_04376 at 4566.169 kb on + strand, within MPMX20_04376 at 4566.169 kb on + strand, within MPMX20_04376 at 4566.177 kb on - strand, within MPMX20_04376 at 4566.179 kb on + strand, within MPMX20_04376 at 4566.188 kb on + strand, within MPMX20_04376 at 4566.206 kb on - strand, within MPMX20_04376 at 4566.217 kb on - strand, within MPMX20_04376 at 4566.240 kb on - strand, within MPMX20_04376 at 4566.311 kb on + strand, within MPMX20_04376 at 4566.312 kb on - strand, within MPMX20_04376 at 4566.320 kb on + strand, within MPMX20_04376 at 4566.356 kb on + strand, within MPMX20_04376 at 4566.377 kb on - strand, within MPMX20_04376 at 4566.384 kb on + strand, within MPMX20_04376 at 4566.385 kb on + strand, within MPMX20_04376 at 4566.392 kb on - strand, within MPMX20_04376 at 4566.584 kb on + strand, within MPMX20_04376 at 4566.592 kb on - strand, within MPMX20_04376 at 4566.597 kb on - strand, within MPMX20_04376 at 4566.597 kb on - strand, within MPMX20_04376 at 4566.656 kb on + strand, within MPMX20_04376 at 4566.662 kb on - strand, within MPMX20_04376 at 4566.664 kb on - strand, within MPMX20_04376 at 4566.668 kb on + strand, within MPMX20_04376 at 4566.668 kb on + strand, within MPMX20_04376 at 4566.681 kb on - strand, within MPMX20_04376 at 4566.694 kb on + strand, within MPMX20_04376 at 4566.726 kb on + strand, within MPMX20_04376 at 4566.818 kb on - strand, within MPMX20_04376 at 4566.827 kb on + strand, within MPMX20_04376 at 4566.835 kb on - strand, within MPMX20_04376 at 4566.835 kb on - strand, within MPMX20_04376 at 4566.893 kb on - strand, within MPMX20_04376 at 4566.918 kb on + strand, within MPMX20_04376 at 4566.921 kb on - strand, within MPMX20_04376 at 4566.955 kb on - strand, within MPMX20_04376 at 4566.980 kb on - strand, within MPMX20_04376 at 4566.989 kb on - strand, within MPMX20_04376 at 4567.072 kb on - strand, within MPMX20_04376 at 4567.097 kb on - strand, within MPMX20_04376 at 4567.168 kb on - strand, within MPMX20_04376 at 4567.297 kb on - strand at 4567.297 kb on - strand at 4567.297 kb on - strand at 4567.297 kb on - strand at 4567.308 kb on + strand at 4567.336 kb on - strand at 4567.480 kb on + strand, within MPMX20_04377 at 4567.483 kb on + strand, within MPMX20_04377 at 4567.485 kb on + strand, within MPMX20_04377 at 4567.522 kb on - strand, within MPMX20_04377 at 4567.529 kb on - strand, within MPMX20_04377 at 4567.543 kb on + strand, within MPMX20_04377 at 4567.543 kb on + strand, within MPMX20_04377 at 4567.543 kb on + strand, within MPMX20_04377 at 4567.543 kb on + strand, within MPMX20_04377 at 4567.551 kb on - strand, within MPMX20_04377 at 4567.551 kb on - strand, within MPMX20_04377 at 4567.551 kb on - strand, within MPMX20_04377 at 4567.551 kb on - strand, within MPMX20_04377 at 4567.551 kb on - strand, within MPMX20_04377 at 4567.553 kb on + strand, within MPMX20_04377 at 4567.578 kb on + strand, within MPMX20_04377 at 4567.578 kb on + strand, within MPMX20_04377 at 4567.586 kb on - strand, within MPMX20_04377 at 4567.586 kb on - strand, within MPMX20_04377 at 4567.606 kb on + strand, within MPMX20_04377 at 4567.614 kb on - strand, within MPMX20_04377 at 4567.805 kb on - strand, within MPMX20_04377 at 4567.863 kb on + strand, within MPMX20_04377 at 4567.868 kb on + strand, within MPMX20_04377 at 4567.885 kb on + strand, within MPMX20_04377 at 4567.930 kb on - strand, within MPMX20_04377 at 4567.948 kb on - strand, within MPMX20_04377 at 4568.030 kb on - strand, within MPMX20_04377 at 4568.036 kb on - strand, within MPMX20_04377 at 4568.104 kb on - strand, within MPMX20_04377 at 4568.106 kb on + strand, within MPMX20_04377 at 4568.119 kb on - strand, within MPMX20_04377 at 4568.186 kb on - strand at 4568.191 kb on + strand at 4568.191 kb on + strand at 4568.200 kb on - strand at 4568.235 kb on - strand at 4568.251 kb on + strand at 4568.259 kb on - strand at 4568.259 kb on - strand at 4568.259 kb on - strand at 4568.316 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,564,699 - MPMX20_04373 0.51 -1.5 4,564,711 + MPMX20_04373 0.53 +1.7 4,564,753 - MPMX20_04373 0.60 +4.9 4,564,815 + MPMX20_04373 0.71 +0.1 4,564,911 + MPMX20_04373 0.87 +5.0 4,564,911 + MPMX20_04373 0.87 +0.6 4,564,926 + MPMX20_04373 0.90 +0.6 4,564,934 + -1.9 4,564,934 - +0.6 4,564,935 + +2.5 4,564,942 - +2.0 4,565,080 + MPMX20_04374 0.34 -4.3 4,565,112 + MPMX20_04374 0.41 -3.3 4,565,112 + MPMX20_04374 0.41 -3.1 4,565,120 - MPMX20_04374 0.43 -1.9 4,565,127 - MPMX20_04374 0.45 -4.3 4,565,139 + MPMX20_04374 0.48 -4.6 4,565,278 + MPMX20_04374 0.82 -3.5 4,565,312 + -3.5 4,565,312 + -1.3 4,565,315 - -4.4 4,565,320 - -0.5 4,565,320 - -2.6 4,565,322 + -2.4 4,565,330 - -1.9 4,565,350 + -0.9 4,565,357 + -1.7 4,565,426 + MPMX20_04375 0.24 -4.6 4,565,454 - MPMX20_04375 0.32 -0.9 4,565,473 + MPMX20_04375 0.38 -2.6 4,565,476 - MPMX20_04375 0.39 -3.6 4,565,481 - MPMX20_04375 0.40 -3.5 4,565,496 + MPMX20_04375 0.45 +0.3 4,565,504 - MPMX20_04375 0.47 -2.9 4,565,506 + MPMX20_04375 0.47 -2.7 4,565,545 - MPMX20_04375 0.59 -1.2 4,565,551 + MPMX20_04375 0.61 -5.4 4,565,575 - MPMX20_04375 0.68 -3.4 4,565,577 - MPMX20_04375 0.68 -2.9 4,565,607 + MPMX20_04375 0.77 -1.3 4,565,617 + MPMX20_04375 0.80 -4.3 4,565,627 + MPMX20_04375 0.83 -1.5 4,565,627 + MPMX20_04375 0.83 -1.7 4,565,632 + MPMX20_04375 0.85 -2.0 4,565,635 - MPMX20_04375 0.86 -2.6 4,565,640 - MPMX20_04375 0.87 -2.6 4,565,640 - MPMX20_04375 0.87 -3.9 4,565,642 + MPMX20_04375 0.88 -5.3 4,565,642 + MPMX20_04375 0.88 -4.1 4,565,659 + -2.0 4,565,675 + -1.0 4,565,677 - -3.2 4,565,690 + +0.6 4,565,704 + -3.0 4,565,704 + -1.4 4,565,713 + -1.3 4,565,739 - -0.2 4,565,739 - +1.2 4,565,813 + -2.9 4,565,827 - -0.2 4,565,892 + MPMX20_04376 0.13 -0.9 4,565,936 + MPMX20_04376 0.15 -0.8 4,565,945 + MPMX20_04376 0.16 -1.6 4,565,984 - MPMX20_04376 0.18 -1.6 4,565,989 + MPMX20_04376 0.19 -1.3 4,565,997 - MPMX20_04376 0.19 -1.4 4,566,019 - MPMX20_04376 0.20 -0.4 4,566,041 - MPMX20_04376 0.22 -0.5 4,566,041 - MPMX20_04376 0.22 -4.0 4,566,052 - MPMX20_04376 0.22 -2.0 4,566,100 - MPMX20_04376 0.25 -1.0 4,566,169 + MPMX20_04376 0.30 -0.3 4,566,169 + MPMX20_04376 0.30 -0.6 4,566,169 + MPMX20_04376 0.30 +0.3 4,566,177 - MPMX20_04376 0.30 -0.7 4,566,179 + MPMX20_04376 0.30 +0.3 4,566,188 + MPMX20_04376 0.31 -0.7 4,566,206 - MPMX20_04376 0.32 -1.2 4,566,217 - MPMX20_04376 0.32 -0.0 4,566,240 - MPMX20_04376 0.34 -0.7 4,566,311 + MPMX20_04376 0.38 -3.1 4,566,312 - MPMX20_04376 0.38 +0.2 4,566,320 + MPMX20_04376 0.39 -0.4 4,566,356 + MPMX20_04376 0.41 -0.8 4,566,377 - MPMX20_04376 0.42 -2.3 4,566,384 + MPMX20_04376 0.43 -2.7 4,566,385 + MPMX20_04376 0.43 -0.6 4,566,392 - MPMX20_04376 0.43 +2.3 4,566,584 + MPMX20_04376 0.55 -1.5 4,566,592 - MPMX20_04376 0.55 +0.3 4,566,597 - MPMX20_04376 0.55 -0.3 4,566,597 - MPMX20_04376 0.55 -3.3 4,566,656 + MPMX20_04376 0.59 -0.3 4,566,662 - MPMX20_04376 0.59 +0.6 4,566,664 - MPMX20_04376 0.59 -0.8 4,566,668 + MPMX20_04376 0.60 +0.2 4,566,668 + MPMX20_04376 0.60 -0.1 4,566,681 - MPMX20_04376 0.60 -3.1 4,566,694 + MPMX20_04376 0.61 +0.1 4,566,726 + MPMX20_04376 0.63 +0.7 4,566,818 - MPMX20_04376 0.69 -1.8 4,566,827 + MPMX20_04376 0.69 -1.1 4,566,835 - MPMX20_04376 0.70 +0.1 4,566,835 - MPMX20_04376 0.70 +1.2 4,566,893 - MPMX20_04376 0.73 -2.6 4,566,918 + MPMX20_04376 0.75 -2.4 4,566,921 - MPMX20_04376 0.75 -2.1 4,566,955 - MPMX20_04376 0.77 +1.1 4,566,980 - MPMX20_04376 0.79 -2.0 4,566,989 - MPMX20_04376 0.79 -2.1 4,567,072 - MPMX20_04376 0.84 -1.7 4,567,097 - MPMX20_04376 0.86 -1.5 4,567,168 - MPMX20_04376 0.90 -1.7 4,567,297 - -0.6 4,567,297 - -1.0 4,567,297 - +1.1 4,567,297 - -1.2 4,567,308 + -2.5 4,567,336 - +0.6 4,567,480 + MPMX20_04377 0.16 -5.7 4,567,483 + MPMX20_04377 0.17 -1.7 4,567,485 + MPMX20_04377 0.17 -2.7 4,567,522 - MPMX20_04377 0.21 -3.4 4,567,529 - MPMX20_04377 0.22 -0.6 4,567,543 + MPMX20_04377 0.23 -0.9 4,567,543 + MPMX20_04377 0.23 -1.8 4,567,543 + MPMX20_04377 0.23 +0.2 4,567,543 + MPMX20_04377 0.23 -3.1 4,567,551 - MPMX20_04377 0.24 -2.4 4,567,551 - MPMX20_04377 0.24 -2.5 4,567,551 - MPMX20_04377 0.24 -1.4 4,567,551 - MPMX20_04377 0.24 -4.1 4,567,551 - MPMX20_04377 0.24 -3.2 4,567,553 + MPMX20_04377 0.24 -1.0 4,567,578 + MPMX20_04377 0.27 -3.5 4,567,578 + MPMX20_04377 0.27 -1.7 4,567,586 - MPMX20_04377 0.28 -2.2 4,567,586 - MPMX20_04377 0.28 -4.9 4,567,606 + MPMX20_04377 0.30 -1.8 4,567,614 - MPMX20_04377 0.31 -4.2 4,567,805 - MPMX20_04377 0.52 -2.4 4,567,863 + MPMX20_04377 0.59 -2.4 4,567,868 + MPMX20_04377 0.59 -1.7 4,567,885 + MPMX20_04377 0.61 -3.0 4,567,930 - MPMX20_04377 0.66 +0.3 4,567,948 - MPMX20_04377 0.68 -2.3 4,568,030 - MPMX20_04377 0.77 -1.3 4,568,036 - MPMX20_04377 0.78 -3.1 4,568,104 - MPMX20_04377 0.85 -1.3 4,568,106 + MPMX20_04377 0.86 -1.4 4,568,119 - MPMX20_04377 0.87 -0.7 4,568,186 - -3.8 4,568,191 + -1.0 4,568,191 + -1.0 4,568,200 - -2.0 4,568,235 - +0.4 4,568,251 + -2.7 4,568,259 - -0.2 4,568,259 - -0.6 4,568,259 - -1.0 4,568,316 + -0.7
Or see this region's nucleotide sequence