Experiment: 0.1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03063 and MPMX20_03064 overlap by 4 nucleotides MPMX20_03064 and MPMX20_03065 overlap by 4 nucleotides MPMX20_03065 and MPMX20_03066 are separated by 135 nucleotides
MPMX20_03063: MPMX20_03063 - Putative multidrug resistance protein MdtD, at 3,212,084 to 3,213,499
_03063
MPMX20_03064: MPMX20_03064 - Signal transduction histidine-protein kinase BaeS, at 3,213,496 to 3,214,899
_03064
MPMX20_03065: MPMX20_03065 - Transcriptional regulatory protein BaeR, at 3,214,896 to 3,215,618
_03065
MPMX20_03066: MPMX20_03066 - hypothetical protein, at 3,215,754 to 3,216,086
_03066
Position (kb)
3213
3214
3215 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 3212.496 kb on + strand, within MPMX20_03063 at 3212.532 kb on + strand, within MPMX20_03063 at 3212.540 kb on - strand, within MPMX20_03063 at 3212.550 kb on - strand, within MPMX20_03063 at 3212.590 kb on - strand, within MPMX20_03063 at 3212.651 kb on + strand, within MPMX20_03063 at 3212.659 kb on - strand, within MPMX20_03063 at 3212.687 kb on - strand, within MPMX20_03063 at 3212.716 kb on - strand, within MPMX20_03063 at 3212.790 kb on + strand, within MPMX20_03063 at 3212.790 kb on + strand, within MPMX20_03063 at 3212.798 kb on - strand, within MPMX20_03063 at 3212.823 kb on - strand, within MPMX20_03063 at 3212.830 kb on - strand, within MPMX20_03063 at 3212.876 kb on - strand, within MPMX20_03063 at 3212.986 kb on + strand, within MPMX20_03063 at 3213.095 kb on + strand, within MPMX20_03063 at 3213.095 kb on + strand, within MPMX20_03063 at 3213.095 kb on + strand, within MPMX20_03063 at 3213.098 kb on - strand, within MPMX20_03063 at 3213.103 kb on - strand, within MPMX20_03063 at 3213.103 kb on - strand, within MPMX20_03063 at 3213.103 kb on - strand, within MPMX20_03063 at 3213.103 kb on - strand, within MPMX20_03063 at 3213.103 kb on - strand, within MPMX20_03063 at 3213.113 kb on - strand, within MPMX20_03063 at 3213.120 kb on - strand, within MPMX20_03063 at 3213.155 kb on + strand, within MPMX20_03063 at 3213.166 kb on - strand, within MPMX20_03063 at 3213.178 kb on + strand, within MPMX20_03063 at 3213.178 kb on + strand, within MPMX20_03063 at 3213.186 kb on - strand, within MPMX20_03063 at 3213.186 kb on - strand, within MPMX20_03063 at 3213.291 kb on + strand, within MPMX20_03063 at 3213.291 kb on + strand, within MPMX20_03063 at 3213.296 kb on + strand, within MPMX20_03063 at 3213.296 kb on + strand, within MPMX20_03063 at 3213.297 kb on + strand, within MPMX20_03063 at 3213.299 kb on - strand, within MPMX20_03063 at 3213.299 kb on - strand, within MPMX20_03063 at 3213.299 kb on - strand, within MPMX20_03063 at 3213.304 kb on - strand, within MPMX20_03063 at 3213.305 kb on - strand, within MPMX20_03063 at 3213.478 kb on + strand at 3213.576 kb on + strand at 3213.576 kb on + strand at 3213.576 kb on + strand at 3213.576 kb on + strand at 3213.576 kb on + strand at 3213.579 kb on - strand at 3213.579 kb on - strand at 3213.579 kb on - strand at 3213.584 kb on - strand at 3213.589 kb on - strand at 3213.596 kb on + strand at 3213.604 kb on - strand at 3213.642 kb on + strand, within MPMX20_03064 at 3213.662 kb on - strand, within MPMX20_03064 at 3213.685 kb on - strand, within MPMX20_03064 at 3213.839 kb on - strand, within MPMX20_03064 at 3213.853 kb on - strand, within MPMX20_03064 at 3213.908 kb on - strand, within MPMX20_03064 at 3214.010 kb on + strand, within MPMX20_03064 at 3214.020 kb on - strand, within MPMX20_03064 at 3214.071 kb on + strand, within MPMX20_03064 at 3214.136 kb on + strand, within MPMX20_03064 at 3214.172 kb on + strand, within MPMX20_03064 at 3214.172 kb on + strand, within MPMX20_03064 at 3214.180 kb on - strand, within MPMX20_03064 at 3214.180 kb on - strand, within MPMX20_03064 at 3214.185 kb on + strand, within MPMX20_03064 at 3214.291 kb on + strand, within MPMX20_03064 at 3214.291 kb on + strand, within MPMX20_03064 at 3214.299 kb on - strand, within MPMX20_03064 at 3214.311 kb on + strand, within MPMX20_03064 at 3214.349 kb on - strand, within MPMX20_03064 at 3214.359 kb on + strand, within MPMX20_03064 at 3214.359 kb on + strand, within MPMX20_03064 at 3214.376 kb on + strand, within MPMX20_03064 at 3214.376 kb on + strand, within MPMX20_03064 at 3214.384 kb on - strand, within MPMX20_03064 at 3214.384 kb on - strand, within MPMX20_03064 at 3214.418 kb on + strand, within MPMX20_03064 at 3214.516 kb on + strand, within MPMX20_03064 at 3214.551 kb on - strand, within MPMX20_03064 at 3214.593 kb on + strand, within MPMX20_03064 at 3214.593 kb on + strand, within MPMX20_03064 at 3214.601 kb on - strand, within MPMX20_03064 at 3214.601 kb on - strand, within MPMX20_03064 at 3214.620 kb on + strand, within MPMX20_03064 at 3214.625 kb on - strand, within MPMX20_03064 at 3214.669 kb on - strand, within MPMX20_03064 at 3214.671 kb on + strand, within MPMX20_03064 at 3214.691 kb on + strand, within MPMX20_03064 at 3214.728 kb on + strand, within MPMX20_03064 at 3214.827 kb on + strand at 3214.850 kb on + strand at 3214.892 kb on + strand at 3215.002 kb on + strand, within MPMX20_03065 at 3215.010 kb on - strand, within MPMX20_03065 at 3215.109 kb on - strand, within MPMX20_03065 at 3215.109 kb on - strand, within MPMX20_03065 at 3215.109 kb on - strand, within MPMX20_03065 at 3215.109 kb on - strand, within MPMX20_03065 at 3215.109 kb on - strand, within MPMX20_03065 at 3215.129 kb on + strand, within MPMX20_03065 at 3215.208 kb on + strand, within MPMX20_03065 at 3215.214 kb on - strand, within MPMX20_03065 at 3215.228 kb on + strand, within MPMX20_03065 at 3215.275 kb on + strand, within MPMX20_03065 at 3215.287 kb on + strand, within MPMX20_03065 at 3215.429 kb on + strand, within MPMX20_03065 at 3215.440 kb on - strand, within MPMX20_03065 at 3215.448 kb on + strand, within MPMX20_03065 at 3215.456 kb on - strand, within MPMX20_03065 at 3215.456 kb on - strand, within MPMX20_03065 at 3215.462 kb on + strand, within MPMX20_03065 at 3215.482 kb on + strand, within MPMX20_03065 at 3215.537 kb on + strand, within MPMX20_03065 at 3215.568 kb on + strand at 3215.568 kb on + strand at 3215.576 kb on - strand at 3215.576 kb on - strand at 3215.603 kb on + strand at 3215.611 kb on - strand at 3215.627 kb on - strand at 3215.677 kb on + strand at 3215.795 kb on + strand, within MPMX20_03066 at 3215.795 kb on + strand, within MPMX20_03066 at 3215.803 kb on - strand, within MPMX20_03066 at 3215.808 kb on - strand, within MPMX20_03066 at 3215.822 kb on - strand, within MPMX20_03066 at 3215.832 kb on + strand, within MPMX20_03066 at 3215.832 kb on + strand, within MPMX20_03066 at 3215.846 kb on + strand, within MPMX20_03066 at 3215.846 kb on + strand, within MPMX20_03066 at 3215.846 kb on + strand, within MPMX20_03066 at 3215.846 kb on + strand, within MPMX20_03066 at 3215.846 kb on + strand, within MPMX20_03066 at 3215.854 kb on - strand, within MPMX20_03066 at 3215.854 kb on - strand, within MPMX20_03066 at 3215.854 kb on - strand, within MPMX20_03066
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,212,496 + MPMX20_03063 0.29 -0.5 3,212,532 + MPMX20_03063 0.32 +1.3 3,212,540 - MPMX20_03063 0.32 -3.2 3,212,550 - MPMX20_03063 0.33 -1.0 3,212,590 - MPMX20_03063 0.36 -0.7 3,212,651 + MPMX20_03063 0.40 -0.4 3,212,659 - MPMX20_03063 0.41 +0.3 3,212,687 - MPMX20_03063 0.43 -0.3 3,212,716 - MPMX20_03063 0.45 +0.5 3,212,790 + MPMX20_03063 0.50 +1.2 3,212,790 + MPMX20_03063 0.50 +0.0 3,212,798 - MPMX20_03063 0.50 +1.4 3,212,823 - MPMX20_03063 0.52 +2.3 3,212,830 - MPMX20_03063 0.53 -2.5 3,212,876 - MPMX20_03063 0.56 -0.2 3,212,986 + MPMX20_03063 0.64 -1.7 3,213,095 + MPMX20_03063 0.71 +0.7 3,213,095 + MPMX20_03063 0.71 +0.0 3,213,095 + MPMX20_03063 0.71 -0.1 3,213,098 - MPMX20_03063 0.72 +1.6 3,213,103 - MPMX20_03063 0.72 -0.5 3,213,103 - MPMX20_03063 0.72 -0.7 3,213,103 - MPMX20_03063 0.72 +0.7 3,213,103 - MPMX20_03063 0.72 +1.0 3,213,103 - MPMX20_03063 0.72 -0.4 3,213,113 - MPMX20_03063 0.73 +0.0 3,213,120 - MPMX20_03063 0.73 -2.2 3,213,155 + MPMX20_03063 0.76 -3.7 3,213,166 - MPMX20_03063 0.76 -1.4 3,213,178 + MPMX20_03063 0.77 -1.4 3,213,178 + MPMX20_03063 0.77 -2.0 3,213,186 - MPMX20_03063 0.78 -2.0 3,213,186 - MPMX20_03063 0.78 +0.0 3,213,291 + MPMX20_03063 0.85 +0.7 3,213,291 + MPMX20_03063 0.85 +0.7 3,213,296 + MPMX20_03063 0.86 -0.7 3,213,296 + MPMX20_03063 0.86 +0.4 3,213,297 + MPMX20_03063 0.86 -0.3 3,213,299 - MPMX20_03063 0.86 -1.3 3,213,299 - MPMX20_03063 0.86 -0.1 3,213,299 - MPMX20_03063 0.86 +0.3 3,213,304 - MPMX20_03063 0.86 -1.8 3,213,305 - MPMX20_03063 0.86 +0.1 3,213,478 + +0.7 3,213,576 + -2.4 3,213,576 + +0.0 3,213,576 + -0.4 3,213,576 + +1.1 3,213,576 + -1.2 3,213,579 - -1.0 3,213,579 - -1.0 3,213,579 - -1.4 3,213,584 - +0.4 3,213,589 - +0.3 3,213,596 + +0.6 3,213,604 - +1.0 3,213,642 + MPMX20_03064 0.10 +0.1 3,213,662 - MPMX20_03064 0.12 +0.4 3,213,685 - MPMX20_03064 0.13 +0.4 3,213,839 - MPMX20_03064 0.24 -1.5 3,213,853 - MPMX20_03064 0.25 -1.7 3,213,908 - MPMX20_03064 0.29 +0.3 3,214,010 + MPMX20_03064 0.37 +0.9 3,214,020 - MPMX20_03064 0.37 -3.7 3,214,071 + MPMX20_03064 0.41 -3.9 3,214,136 + MPMX20_03064 0.46 -1.6 3,214,172 + MPMX20_03064 0.48 -0.5 3,214,172 + MPMX20_03064 0.48 +2.1 3,214,180 - MPMX20_03064 0.49 -2.6 3,214,180 - MPMX20_03064 0.49 -1.1 3,214,185 + MPMX20_03064 0.49 +0.8 3,214,291 + MPMX20_03064 0.57 -1.8 3,214,291 + MPMX20_03064 0.57 +1.3 3,214,299 - MPMX20_03064 0.57 -1.5 3,214,311 + MPMX20_03064 0.58 -1.3 3,214,349 - MPMX20_03064 0.61 +0.8 3,214,359 + MPMX20_03064 0.61 -1.4 3,214,359 + MPMX20_03064 0.61 +1.1 3,214,376 + MPMX20_03064 0.63 -2.9 3,214,376 + MPMX20_03064 0.63 -4.0 3,214,384 - MPMX20_03064 0.63 -0.1 3,214,384 - MPMX20_03064 0.63 +1.4 3,214,418 + MPMX20_03064 0.66 -0.2 3,214,516 + MPMX20_03064 0.73 -1.5 3,214,551 - MPMX20_03064 0.75 -2.0 3,214,593 + MPMX20_03064 0.78 -0.4 3,214,593 + MPMX20_03064 0.78 +0.5 3,214,601 - MPMX20_03064 0.79 +0.5 3,214,601 - MPMX20_03064 0.79 +0.7 3,214,620 + MPMX20_03064 0.80 +1.0 3,214,625 - MPMX20_03064 0.80 -1.1 3,214,669 - MPMX20_03064 0.84 +0.0 3,214,671 + MPMX20_03064 0.84 -0.7 3,214,691 + MPMX20_03064 0.85 -2.3 3,214,728 + MPMX20_03064 0.88 -0.6 3,214,827 + -0.5 3,214,850 + -0.3 3,214,892 + +0.4 3,215,002 + MPMX20_03065 0.15 -0.4 3,215,010 - MPMX20_03065 0.16 +0.4 3,215,109 - MPMX20_03065 0.29 +0.0 3,215,109 - MPMX20_03065 0.29 -0.8 3,215,109 - MPMX20_03065 0.29 -0.4 3,215,109 - MPMX20_03065 0.29 -0.0 3,215,109 - MPMX20_03065 0.29 -1.3 3,215,129 + MPMX20_03065 0.32 +1.6 3,215,208 + MPMX20_03065 0.43 -4.1 3,215,214 - MPMX20_03065 0.44 +2.6 3,215,228 + MPMX20_03065 0.46 -0.7 3,215,275 + MPMX20_03065 0.52 +2.1 3,215,287 + MPMX20_03065 0.54 -0.2 3,215,429 + MPMX20_03065 0.74 -0.7 3,215,440 - MPMX20_03065 0.75 +4.8 3,215,448 + MPMX20_03065 0.76 -0.5 3,215,456 - MPMX20_03065 0.77 -0.8 3,215,456 - MPMX20_03065 0.77 -0.8 3,215,462 + MPMX20_03065 0.78 +1.0 3,215,482 + MPMX20_03065 0.81 +2.8 3,215,537 + MPMX20_03065 0.89 -3.0 3,215,568 + -0.3 3,215,568 + -1.4 3,215,576 - +0.8 3,215,576 - -0.4 3,215,603 + -0.6 3,215,611 - +0.5 3,215,627 - +0.1 3,215,677 + -0.4 3,215,795 + MPMX20_03066 0.12 -1.4 3,215,795 + MPMX20_03066 0.12 -0.9 3,215,803 - MPMX20_03066 0.15 +0.1 3,215,808 - MPMX20_03066 0.16 -0.7 3,215,822 - MPMX20_03066 0.20 -0.2 3,215,832 + MPMX20_03066 0.23 +0.8 3,215,832 + MPMX20_03066 0.23 +0.0 3,215,846 + MPMX20_03066 0.28 -1.9 3,215,846 + MPMX20_03066 0.28 +1.6 3,215,846 + MPMX20_03066 0.28 +0.8 3,215,846 + MPMX20_03066 0.28 +0.7 3,215,846 + MPMX20_03066 0.28 +0.9 3,215,854 - MPMX20_03066 0.30 -2.2 3,215,854 - MPMX20_03066 0.30 +0.2 3,215,854 - MPMX20_03066 0.30 +0.8
Or see this region's nucleotide sequence