Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_00332

Experiment: 0.1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_00331 and MPMX20_00332 are separated by 32 nucleotidesMPMX20_00332 and MPMX20_00333 are separated by 547 nucleotides MPMX20_00331: MPMX20_00331 - Proline/betaine transporter, at 350,719 to 352,221 _00331 MPMX20_00332: MPMX20_00332 - hypothetical protein, at 352,254 to 353,156 _00332 MPMX20_00333: MPMX20_00333 - 16S ribosomal RNA, at 353,704 to 355,239 _00333 Position (kb) 352 353 354Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 351.254 kb on + strand, within MPMX20_00331at 351.273 kb on + strand, within MPMX20_00331at 351.308 kb on + strand, within MPMX20_00331at 351.317 kb on + strand, within MPMX20_00331at 351.325 kb on - strand, within MPMX20_00331at 351.325 kb on - strand, within MPMX20_00331at 351.359 kb on + strand, within MPMX20_00331at 351.359 kb on + strand, within MPMX20_00331at 351.359 kb on + strand, within MPMX20_00331at 351.367 kb on - strand, within MPMX20_00331at 351.464 kb on + strand, within MPMX20_00331at 351.472 kb on - strand, within MPMX20_00331at 351.472 kb on - strand, within MPMX20_00331at 351.507 kb on - strand, within MPMX20_00331at 351.509 kb on + strand, within MPMX20_00331at 351.509 kb on + strand, within MPMX20_00331at 351.509 kb on + strand, within MPMX20_00331at 351.509 kb on + strand, within MPMX20_00331at 351.514 kb on + strand, within MPMX20_00331at 351.517 kb on - strand, within MPMX20_00331at 351.517 kb on - strand, within MPMX20_00331at 351.517 kb on - strand, within MPMX20_00331at 351.517 kb on - strand, within MPMX20_00331at 351.517 kb on - strand, within MPMX20_00331at 351.517 kb on - strand, within MPMX20_00331at 351.519 kb on + strand, within MPMX20_00331at 351.532 kb on + strand, within MPMX20_00331at 351.565 kb on - strand, within MPMX20_00331at 351.565 kb on - strand, within MPMX20_00331at 351.591 kb on + strand, within MPMX20_00331at 351.593 kb on + strand, within MPMX20_00331at 351.593 kb on + strand, within MPMX20_00331at 351.593 kb on + strand, within MPMX20_00331at 351.593 kb on + strand, within MPMX20_00331at 351.593 kb on + strand, within MPMX20_00331at 351.593 kb on + strand, within MPMX20_00331at 351.593 kb on + strand, within MPMX20_00331at 351.599 kb on - strand, within MPMX20_00331at 351.600 kb on + strand, within MPMX20_00331at 351.601 kb on - strand, within MPMX20_00331at 351.601 kb on - strand, within MPMX20_00331at 351.601 kb on - strand, within MPMX20_00331at 351.601 kb on - strand, within MPMX20_00331at 351.601 kb on - strand, within MPMX20_00331at 351.605 kb on + strand, within MPMX20_00331at 351.618 kb on - strand, within MPMX20_00331at 351.623 kb on - strand, within MPMX20_00331at 351.638 kb on - strand, within MPMX20_00331at 351.645 kb on - strand, within MPMX20_00331at 351.711 kb on - strand, within MPMX20_00331at 351.713 kb on + strand, within MPMX20_00331at 351.769 kb on - strand, within MPMX20_00331at 351.800 kb on - strand, within MPMX20_00331at 351.828 kb on + strand, within MPMX20_00331at 351.842 kb on - strand, within MPMX20_00331at 351.844 kb on - strand, within MPMX20_00331at 351.854 kb on - strand, within MPMX20_00331at 351.892 kb on + strand, within MPMX20_00331at 351.892 kb on + strand, within MPMX20_00331at 351.900 kb on - strand, within MPMX20_00331at 351.919 kb on + strand, within MPMX20_00331at 351.920 kb on + strand, within MPMX20_00331at 351.948 kb on + strand, within MPMX20_00331at 351.956 kb on - strand, within MPMX20_00331at 352.053 kb on + strand, within MPMX20_00331at 352.067 kb on + strand, within MPMX20_00331at 352.075 kb on - strandat 352.075 kb on - strandat 352.114 kb on + strandat 352.122 kb on - strandat 352.124 kb on + strandat 352.127 kb on - strandat 352.146 kb on + strandat 352.184 kb on + strandat 352.194 kb on + strandat 352.268 kb on - strandat 352.290 kb on + strandat 352.311 kb on - strandat 352.318 kb on + strandat 352.329 kb on + strandat 352.329 kb on + strandat 352.335 kb on - strandat 352.337 kb on - strandat 352.374 kb on + strand, within MPMX20_00332at 352.451 kb on - strand, within MPMX20_00332at 352.476 kb on + strand, within MPMX20_00332at 352.476 kb on + strand, within MPMX20_00332at 352.484 kb on - strand, within MPMX20_00332at 352.484 kb on - strand, within MPMX20_00332at 352.493 kb on + strand, within MPMX20_00332at 352.504 kb on + strand, within MPMX20_00332at 352.512 kb on - strand, within MPMX20_00332at 352.512 kb on - strand, within MPMX20_00332at 352.532 kb on + strand, within MPMX20_00332at 352.559 kb on - strand, within MPMX20_00332at 352.634 kb on - strand, within MPMX20_00332at 352.647 kb on - strand, within MPMX20_00332at 352.647 kb on - strand, within MPMX20_00332at 352.677 kb on - strand, within MPMX20_00332at 352.700 kb on + strand, within MPMX20_00332at 352.742 kb on + strand, within MPMX20_00332at 352.747 kb on + strand, within MPMX20_00332at 352.749 kb on + strand, within MPMX20_00332at 352.749 kb on + strand, within MPMX20_00332at 352.752 kb on - strand, within MPMX20_00332at 352.755 kb on - strand, within MPMX20_00332at 352.759 kb on + strand, within MPMX20_00332at 352.764 kb on + strand, within MPMX20_00332at 352.778 kb on + strand, within MPMX20_00332at 352.779 kb on + strand, within MPMX20_00332at 352.789 kb on + strand, within MPMX20_00332at 352.789 kb on + strand, within MPMX20_00332at 352.797 kb on - strand, within MPMX20_00332at 352.811 kb on + strand, within MPMX20_00332at 352.812 kb on + strand, within MPMX20_00332at 352.818 kb on - strand, within MPMX20_00332at 352.820 kb on - strand, within MPMX20_00332at 352.820 kb on - strand, within MPMX20_00332at 352.862 kb on + strand, within MPMX20_00332at 352.870 kb on - strand, within MPMX20_00332at 352.931 kb on - strand, within MPMX20_00332at 352.933 kb on - strand, within MPMX20_00332at 352.955 kb on - strand, within MPMX20_00332at 352.966 kb on - strand, within MPMX20_00332at 352.976 kb on - strand, within MPMX20_00332at 352.986 kb on - strand, within MPMX20_00332at 353.003 kb on + strand, within MPMX20_00332at 353.022 kb on - strand, within MPMX20_00332at 353.032 kb on - strand, within MPMX20_00332at 353.086 kb on + strandat 353.106 kb on + strandat 353.123 kb on + strandat 353.123 kb on + strandat 353.123 kb on + strandat 353.131 kb on - strandat 353.131 kb on - strandat 353.164 kb on + strandat 353.211 kb on - strandat 353.211 kb on - strandat 353.211 kb on - strandat 353.221 kb on - strandat 353.252 kb on - strandat 353.351 kb on - strandat 353.389 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
351,254 + MPMX20_00331 0.36 -1.9
351,273 + MPMX20_00331 0.37 -2.0
351,308 + MPMX20_00331 0.39 +0.3
351,317 + MPMX20_00331 0.40 -0.2
351,325 - MPMX20_00331 0.40 +0.6
351,325 - MPMX20_00331 0.40 -0.8
351,359 + MPMX20_00331 0.43 +1.2
351,359 + MPMX20_00331 0.43 -2.4
351,359 + MPMX20_00331 0.43 -0.8
351,367 - MPMX20_00331 0.43 -0.9
351,464 + MPMX20_00331 0.50 -0.3
351,472 - MPMX20_00331 0.50 -0.3
351,472 - MPMX20_00331 0.50 -0.5
351,507 - MPMX20_00331 0.52 -0.5
351,509 + MPMX20_00331 0.53 -0.1
351,509 + MPMX20_00331 0.53 -0.8
351,509 + MPMX20_00331 0.53 -1.6
351,509 + MPMX20_00331 0.53 -3.0
351,514 + MPMX20_00331 0.53 -0.5
351,517 - MPMX20_00331 0.53 -1.4
351,517 - MPMX20_00331 0.53 +0.6
351,517 - MPMX20_00331 0.53 +0.8
351,517 - MPMX20_00331 0.53 -1.9
351,517 - MPMX20_00331 0.53 -1.5
351,517 - MPMX20_00331 0.53 -2.5
351,519 + MPMX20_00331 0.53 -0.4
351,532 + MPMX20_00331 0.54 +1.3
351,565 - MPMX20_00331 0.56 -0.5
351,565 - MPMX20_00331 0.56 -3.0
351,591 + MPMX20_00331 0.58 -0.6
351,593 + MPMX20_00331 0.58 +0.4
351,593 + MPMX20_00331 0.58 -1.7
351,593 + MPMX20_00331 0.58 +3.9
351,593 + MPMX20_00331 0.58 +1.0
351,593 + MPMX20_00331 0.58 -1.7
351,593 + MPMX20_00331 0.58 +2.8
351,593 + MPMX20_00331 0.58 +0.5
351,599 - MPMX20_00331 0.59 +1.0
351,600 + MPMX20_00331 0.59 -0.5
351,601 - MPMX20_00331 0.59 -0.8
351,601 - MPMX20_00331 0.59 +1.3
351,601 - MPMX20_00331 0.59 -0.6
351,601 - MPMX20_00331 0.59 +0.6
351,601 - MPMX20_00331 0.59 +0.6
351,605 + MPMX20_00331 0.59 -1.7
351,618 - MPMX20_00331 0.60 -0.7
351,623 - MPMX20_00331 0.60 -2.0
351,638 - MPMX20_00331 0.61 -1.3
351,645 - MPMX20_00331 0.62 -1.9
351,711 - MPMX20_00331 0.66 -1.0
351,713 + MPMX20_00331 0.66 -2.0
351,769 - MPMX20_00331 0.70 -0.3
351,800 - MPMX20_00331 0.72 -0.1
351,828 + MPMX20_00331 0.74 +0.3
351,842 - MPMX20_00331 0.75 -2.3
351,844 - MPMX20_00331 0.75 -1.4
351,854 - MPMX20_00331 0.76 -1.7
351,892 + MPMX20_00331 0.78 -0.8
351,892 + MPMX20_00331 0.78 -1.2
351,900 - MPMX20_00331 0.79 -0.1
351,919 + MPMX20_00331 0.80 +2.0
351,920 + MPMX20_00331 0.80 -0.3
351,948 + MPMX20_00331 0.82 -0.6
351,956 - MPMX20_00331 0.82 +1.9
352,053 + MPMX20_00331 0.89 -0.7
352,067 + MPMX20_00331 0.90 -0.5
352,075 - -1.5
352,075 - -0.6
352,114 + +1.5
352,122 - -1.8
352,124 + -1.6
352,127 - -1.5
352,146 + +0.2
352,184 + -0.2
352,194 + +0.9
352,268 - -0.7
352,290 + -1.9
352,311 - +0.8
352,318 + -1.1
352,329 + -0.3
352,329 + -3.0
352,335 - -1.5
352,337 - -3.0
352,374 + MPMX20_00332 0.13 -1.7
352,451 - MPMX20_00332 0.22 +0.8
352,476 + MPMX20_00332 0.25 -0.5
352,476 + MPMX20_00332 0.25 +0.2
352,484 - MPMX20_00332 0.25 -0.9
352,484 - MPMX20_00332 0.25 +1.9
352,493 + MPMX20_00332 0.26 +0.2
352,504 + MPMX20_00332 0.28 -3.5
352,512 - MPMX20_00332 0.29 +0.1
352,512 - MPMX20_00332 0.29 +2.4
352,532 + MPMX20_00332 0.31 +1.3
352,559 - MPMX20_00332 0.34 +1.4
352,634 - MPMX20_00332 0.42 +0.1
352,647 - MPMX20_00332 0.44 -2.6
352,647 - MPMX20_00332 0.44 -2.0
352,677 - MPMX20_00332 0.47 +0.3
352,700 + MPMX20_00332 0.49 -0.3
352,742 + MPMX20_00332 0.54 -1.2
352,747 + MPMX20_00332 0.55 -2.8
352,749 + MPMX20_00332 0.55 -0.6
352,749 + MPMX20_00332 0.55 -0.3
352,752 - MPMX20_00332 0.55 -0.1
352,755 - MPMX20_00332 0.55 -0.7
352,759 + MPMX20_00332 0.56 -2.3
352,764 + MPMX20_00332 0.56 -2.3
352,778 + MPMX20_00332 0.58 -0.9
352,779 + MPMX20_00332 0.58 +0.1
352,789 + MPMX20_00332 0.59 +0.3
352,789 + MPMX20_00332 0.59 -1.4
352,797 - MPMX20_00332 0.60 -0.7
352,811 + MPMX20_00332 0.62 -0.5
352,812 + MPMX20_00332 0.62 +0.4
352,818 - MPMX20_00332 0.62 -0.7
352,820 - MPMX20_00332 0.63 +0.2
352,820 - MPMX20_00332 0.63 +1.1
352,862 + MPMX20_00332 0.67 -1.5
352,870 - MPMX20_00332 0.68 +0.0
352,931 - MPMX20_00332 0.75 +0.1
352,933 - MPMX20_00332 0.75 +0.0
352,955 - MPMX20_00332 0.78 +0.8
352,966 - MPMX20_00332 0.79 -2.1
352,976 - MPMX20_00332 0.80 -1.1
352,986 - MPMX20_00332 0.81 -0.0
353,003 + MPMX20_00332 0.83 -0.0
353,022 - MPMX20_00332 0.85 -2.1
353,032 - MPMX20_00332 0.86 -1.7
353,086 + -1.3
353,106 + -1.7
353,123 + -2.5
353,123 + -0.5
353,123 + -0.7
353,131 - -2.0
353,131 - -1.0
353,164 + -0.2
353,211 - -0.5
353,211 - -0.1
353,211 - +0.3
353,221 - -1.3
353,252 - -0.7
353,351 - +0.3
353,389 + -0.7

Or see this region's nucleotide sequence