Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04578

Experiment: TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04576 and MPMX20_04577 are separated by 12 nucleotidesMPMX20_04577 and MPMX20_04578 overlap by 4 nucleotidesMPMX20_04578 and MPMX20_04579 overlap by 4 nucleotides MPMX20_04576: MPMX20_04576 - Formate dehydrogenase-O major subunit, at 4,787,158 to 4,789,572 _04576 MPMX20_04577: MPMX20_04577 - Formate dehydrogenase-O iron-sulfur subunit, at 4,789,585 to 4,790,487 _04577 MPMX20_04578: MPMX20_04578 - Formate dehydrogenase, cytochrome b556(fdo) subunit, at 4,790,484 to 4,791,119 _04578 MPMX20_04579: MPMX20_04579 - Protein FdhE, at 4,791,116 to 4,792,045 _04579 Position (kb) 4790 4791 4792Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 4789.493 kb on + strandat 4789.501 kb on - strandat 4789.501 kb on - strandat 4789.536 kb on + strandat 4789.567 kb on + strandat 4789.581 kb on + strandat 4789.581 kb on + strandat 4789.589 kb on - strandat 4789.589 kb on - strandat 4789.589 kb on - strandat 4789.589 kb on - strandat 4789.632 kb on + strandat 4789.725 kb on + strand, within MPMX20_04577at 4789.730 kb on + strand, within MPMX20_04577at 4789.730 kb on + strand, within MPMX20_04577at 4789.777 kb on + strand, within MPMX20_04577at 4789.785 kb on - strand, within MPMX20_04577at 4789.809 kb on + strand, within MPMX20_04577at 4789.811 kb on + strand, within MPMX20_04577at 4789.817 kb on - strand, within MPMX20_04577at 4789.817 kb on - strand, within MPMX20_04577at 4789.880 kb on + strand, within MPMX20_04577at 4789.881 kb on + strand, within MPMX20_04577at 4789.897 kb on + strand, within MPMX20_04577at 4789.897 kb on + strand, within MPMX20_04577at 4789.897 kb on + strand, within MPMX20_04577at 4789.900 kb on - strand, within MPMX20_04577at 4789.905 kb on - strand, within MPMX20_04577at 4789.907 kb on + strand, within MPMX20_04577at 4789.915 kb on - strand, within MPMX20_04577at 4789.925 kb on + strand, within MPMX20_04577at 4789.930 kb on - strand, within MPMX20_04577at 4790.031 kb on + strand, within MPMX20_04577at 4790.075 kb on - strand, within MPMX20_04577at 4790.079 kb on - strand, within MPMX20_04577at 4790.109 kb on + strand, within MPMX20_04577at 4790.226 kb on - strand, within MPMX20_04577at 4790.282 kb on + strand, within MPMX20_04577at 4790.282 kb on + strand, within MPMX20_04577at 4790.292 kb on + strand, within MPMX20_04577at 4790.292 kb on + strand, within MPMX20_04577at 4790.329 kb on + strand, within MPMX20_04577at 4790.401 kb on - strandat 4790.422 kb on + strandat 4790.432 kb on + strandat 4790.510 kb on - strandat 4790.520 kb on - strandat 4790.637 kb on - strand, within MPMX20_04578at 4790.649 kb on - strand, within MPMX20_04578at 4790.786 kb on + strand, within MPMX20_04578at 4790.794 kb on - strand, within MPMX20_04578at 4790.811 kb on + strand, within MPMX20_04578at 4790.884 kb on - strand, within MPMX20_04578at 4790.929 kb on + strand, within MPMX20_04578at 4791.027 kb on + strand, within MPMX20_04578at 4791.027 kb on + strand, within MPMX20_04578at 4791.027 kb on + strand, within MPMX20_04578at 4791.035 kb on - strand, within MPMX20_04578at 4791.044 kb on - strand, within MPMX20_04578at 4791.061 kb on - strandat 4791.074 kb on - strandat 4791.135 kb on + strandat 4791.151 kb on - strandat 4791.198 kb on - strandat 4791.203 kb on + strandat 4791.211 kb on + strand, within MPMX20_04579at 4791.261 kb on - strand, within MPMX20_04579at 4791.292 kb on + strand, within MPMX20_04579at 4791.332 kb on - strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.376 kb on + strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.384 kb on - strand, within MPMX20_04579at 4791.423 kb on + strand, within MPMX20_04579at 4791.423 kb on + strand, within MPMX20_04579at 4791.431 kb on + strand, within MPMX20_04579at 4791.431 kb on - strand, within MPMX20_04579at 4791.439 kb on - strand, within MPMX20_04579at 4791.469 kb on + strand, within MPMX20_04579at 4791.474 kb on + strand, within MPMX20_04579at 4791.477 kb on - strand, within MPMX20_04579at 4791.523 kb on + strand, within MPMX20_04579at 4791.555 kb on - strand, within MPMX20_04579at 4791.568 kb on + strand, within MPMX20_04579at 4791.696 kb on + strand, within MPMX20_04579at 4791.704 kb on - strand, within MPMX20_04579at 4791.732 kb on - strand, within MPMX20_04579at 4791.756 kb on + strand, within MPMX20_04579at 4791.792 kb on + strand, within MPMX20_04579at 4791.807 kb on + strand, within MPMX20_04579at 4791.835 kb on - strand, within MPMX20_04579at 4791.894 kb on - strand, within MPMX20_04579at 4792.016 kb on - strandat 4792.016 kb on - strandat 4792.059 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,789,493 + -0.1
4,789,501 - -0.4
4,789,501 - +1.1
4,789,536 + -1.1
4,789,567 + +1.0
4,789,581 + -1.6
4,789,581 + +0.3
4,789,589 - +0.0
4,789,589 - +0.6
4,789,589 - -0.2
4,789,589 - -0.7
4,789,632 + +1.8
4,789,725 + MPMX20_04577 0.16 -0.7
4,789,730 + MPMX20_04577 0.16 +1.3
4,789,730 + MPMX20_04577 0.16 -0.7
4,789,777 + MPMX20_04577 0.21 +1.4
4,789,785 - MPMX20_04577 0.22 -0.7
4,789,809 + MPMX20_04577 0.25 -0.2
4,789,811 + MPMX20_04577 0.25 +0.6
4,789,817 - MPMX20_04577 0.26 -0.9
4,789,817 - MPMX20_04577 0.26 +5.9
4,789,880 + MPMX20_04577 0.33 -0.7
4,789,881 + MPMX20_04577 0.33 -1.7
4,789,897 + MPMX20_04577 0.35 +1.3
4,789,897 + MPMX20_04577 0.35 -0.3
4,789,897 + MPMX20_04577 0.35 -0.1
4,789,900 - MPMX20_04577 0.35 -0.4
4,789,905 - MPMX20_04577 0.35 +0.8
4,789,907 + MPMX20_04577 0.36 +0.7
4,789,915 - MPMX20_04577 0.37 +0.3
4,789,925 + MPMX20_04577 0.38 +0.1
4,789,930 - MPMX20_04577 0.38 +1.1
4,790,031 + MPMX20_04577 0.49 +0.6
4,790,075 - MPMX20_04577 0.54 -0.2
4,790,079 - MPMX20_04577 0.55 +0.6
4,790,109 + MPMX20_04577 0.58 +0.3
4,790,226 - MPMX20_04577 0.71 +2.7
4,790,282 + MPMX20_04577 0.77 +0.6
4,790,282 + MPMX20_04577 0.77 -0.5
4,790,292 + MPMX20_04577 0.78 -0.6
4,790,292 + MPMX20_04577 0.78 -0.9
4,790,329 + MPMX20_04577 0.82 +0.1
4,790,401 - -0.2
4,790,422 + -0.4
4,790,432 + -0.4
4,790,510 - +0.1
4,790,520 - -1.2
4,790,637 - MPMX20_04578 0.24 -1.2
4,790,649 - MPMX20_04578 0.26 +1.4
4,790,786 + MPMX20_04578 0.47 +1.8
4,790,794 - MPMX20_04578 0.49 +0.2
4,790,811 + MPMX20_04578 0.51 -0.3
4,790,884 - MPMX20_04578 0.63 -0.2
4,790,929 + MPMX20_04578 0.70 -1.4
4,791,027 + MPMX20_04578 0.85 -1.5
4,791,027 + MPMX20_04578 0.85 -0.7
4,791,027 + MPMX20_04578 0.85 +0.5
4,791,035 - MPMX20_04578 0.87 -1.1
4,791,044 - MPMX20_04578 0.88 -1.3
4,791,061 - -0.7
4,791,074 - -0.2
4,791,135 + -0.4
4,791,151 - -1.6
4,791,198 - +0.1
4,791,203 + +2.7
4,791,211 + MPMX20_04579 0.10 -2.0
4,791,261 - MPMX20_04579 0.16 -0.1
4,791,292 + MPMX20_04579 0.19 +1.1
4,791,332 - MPMX20_04579 0.23 +1.0
4,791,376 + MPMX20_04579 0.28 +0.7
4,791,376 + MPMX20_04579 0.28 +4.6
4,791,376 + MPMX20_04579 0.28 +2.6
4,791,376 + MPMX20_04579 0.28 +2.4
4,791,376 + MPMX20_04579 0.28 -0.2
4,791,376 + MPMX20_04579 0.28 -0.9
4,791,376 + MPMX20_04579 0.28 +0.2
4,791,376 + MPMX20_04579 0.28 +0.3
4,791,376 + MPMX20_04579 0.28 +0.1
4,791,376 + MPMX20_04579 0.28 -0.7
4,791,376 + MPMX20_04579 0.28 +0.3
4,791,376 + MPMX20_04579 0.28 -1.0
4,791,376 + MPMX20_04579 0.28 +0.8
4,791,376 + MPMX20_04579 0.28 +1.1
4,791,376 + MPMX20_04579 0.28 -0.1
4,791,384 - MPMX20_04579 0.29 -0.4
4,791,384 - MPMX20_04579 0.29 -0.4
4,791,384 - MPMX20_04579 0.29 +0.8
4,791,384 - MPMX20_04579 0.29 +1.8
4,791,384 - MPMX20_04579 0.29 +0.6
4,791,384 - MPMX20_04579 0.29 -0.7
4,791,384 - MPMX20_04579 0.29 +0.8
4,791,384 - MPMX20_04579 0.29 +0.6
4,791,384 - MPMX20_04579 0.29 +0.6
4,791,384 - MPMX20_04579 0.29 -0.7
4,791,423 + MPMX20_04579 0.33 -0.6
4,791,423 + MPMX20_04579 0.33 -0.9
4,791,431 + MPMX20_04579 0.34 -1.0
4,791,431 - MPMX20_04579 0.34 +0.6
4,791,439 - MPMX20_04579 0.35 +0.4
4,791,469 + MPMX20_04579 0.38 +0.1
4,791,474 + MPMX20_04579 0.38 -0.7
4,791,477 - MPMX20_04579 0.39 -0.4
4,791,523 + MPMX20_04579 0.44 -0.3
4,791,555 - MPMX20_04579 0.47 -1.6
4,791,568 + MPMX20_04579 0.49 -0.4
4,791,696 + MPMX20_04579 0.62 -1.2
4,791,704 - MPMX20_04579 0.63 -0.4
4,791,732 - MPMX20_04579 0.66 +1.1
4,791,756 + MPMX20_04579 0.69 -0.5
4,791,792 + MPMX20_04579 0.73 -0.6
4,791,807 + MPMX20_04579 0.74 -0.6
4,791,835 - MPMX20_04579 0.77 +1.1
4,791,894 - MPMX20_04579 0.84 -1.3
4,792,016 - +0.6
4,792,016 - -1.1
4,792,059 - +1.1

Or see this region's nucleotide sequence