Experiment: TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04576 and MPMX20_04577 are separated by 12 nucleotides MPMX20_04577 and MPMX20_04578 overlap by 4 nucleotides MPMX20_04578 and MPMX20_04579 overlap by 4 nucleotides
MPMX20_04576: MPMX20_04576 - Formate dehydrogenase-O major subunit, at 4,787,158 to 4,789,572
_04576
MPMX20_04577: MPMX20_04577 - Formate dehydrogenase-O iron-sulfur subunit, at 4,789,585 to 4,790,487
_04577
MPMX20_04578: MPMX20_04578 - Formate dehydrogenase, cytochrome b556(fdo) subunit, at 4,790,484 to 4,791,119
_04578
MPMX20_04579: MPMX20_04579 - Protein FdhE, at 4,791,116 to 4,792,045
_04579
Position (kb)
4790
4791
4792 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6 at 4789.493 kb on + strand at 4789.501 kb on - strand at 4789.501 kb on - strand at 4789.536 kb on + strand at 4789.567 kb on + strand at 4789.581 kb on + strand at 4789.581 kb on + strand at 4789.589 kb on - strand at 4789.589 kb on - strand at 4789.589 kb on - strand at 4789.589 kb on - strand at 4789.632 kb on + strand at 4789.725 kb on + strand, within MPMX20_04577 at 4789.730 kb on + strand, within MPMX20_04577 at 4789.730 kb on + strand, within MPMX20_04577 at 4789.777 kb on + strand, within MPMX20_04577 at 4789.785 kb on - strand, within MPMX20_04577 at 4789.809 kb on + strand, within MPMX20_04577 at 4789.811 kb on + strand, within MPMX20_04577 at 4789.817 kb on - strand, within MPMX20_04577 at 4789.817 kb on - strand, within MPMX20_04577 at 4789.880 kb on + strand, within MPMX20_04577 at 4789.881 kb on + strand, within MPMX20_04577 at 4789.897 kb on + strand, within MPMX20_04577 at 4789.897 kb on + strand, within MPMX20_04577 at 4789.897 kb on + strand, within MPMX20_04577 at 4789.900 kb on - strand, within MPMX20_04577 at 4789.905 kb on - strand, within MPMX20_04577 at 4789.907 kb on + strand, within MPMX20_04577 at 4789.915 kb on - strand, within MPMX20_04577 at 4789.925 kb on + strand, within MPMX20_04577 at 4789.930 kb on - strand, within MPMX20_04577 at 4790.031 kb on + strand, within MPMX20_04577 at 4790.075 kb on - strand, within MPMX20_04577 at 4790.079 kb on - strand, within MPMX20_04577 at 4790.109 kb on + strand, within MPMX20_04577 at 4790.226 kb on - strand, within MPMX20_04577 at 4790.282 kb on + strand, within MPMX20_04577 at 4790.282 kb on + strand, within MPMX20_04577 at 4790.292 kb on + strand, within MPMX20_04577 at 4790.292 kb on + strand, within MPMX20_04577 at 4790.329 kb on + strand, within MPMX20_04577 at 4790.401 kb on - strand at 4790.422 kb on + strand at 4790.432 kb on + strand at 4790.510 kb on - strand at 4790.520 kb on - strand at 4790.637 kb on - strand, within MPMX20_04578 at 4790.649 kb on - strand, within MPMX20_04578 at 4790.786 kb on + strand, within MPMX20_04578 at 4790.794 kb on - strand, within MPMX20_04578 at 4790.811 kb on + strand, within MPMX20_04578 at 4790.884 kb on - strand, within MPMX20_04578 at 4790.929 kb on + strand, within MPMX20_04578 at 4791.027 kb on + strand, within MPMX20_04578 at 4791.027 kb on + strand, within MPMX20_04578 at 4791.027 kb on + strand, within MPMX20_04578 at 4791.035 kb on - strand, within MPMX20_04578 at 4791.044 kb on - strand, within MPMX20_04578 at 4791.061 kb on - strand at 4791.074 kb on - strand at 4791.135 kb on + strand at 4791.151 kb on - strand at 4791.198 kb on - strand at 4791.203 kb on + strand at 4791.211 kb on + strand, within MPMX20_04579 at 4791.261 kb on - strand, within MPMX20_04579 at 4791.292 kb on + strand, within MPMX20_04579 at 4791.332 kb on - strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.376 kb on + strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.384 kb on - strand, within MPMX20_04579 at 4791.423 kb on + strand, within MPMX20_04579 at 4791.423 kb on + strand, within MPMX20_04579 at 4791.431 kb on + strand, within MPMX20_04579 at 4791.431 kb on - strand, within MPMX20_04579 at 4791.439 kb on - strand, within MPMX20_04579 at 4791.469 kb on + strand, within MPMX20_04579 at 4791.474 kb on + strand, within MPMX20_04579 at 4791.477 kb on - strand, within MPMX20_04579 at 4791.523 kb on + strand, within MPMX20_04579 at 4791.555 kb on - strand, within MPMX20_04579 at 4791.568 kb on + strand, within MPMX20_04579 at 4791.696 kb on + strand, within MPMX20_04579 at 4791.704 kb on - strand, within MPMX20_04579 at 4791.732 kb on - strand, within MPMX20_04579 at 4791.756 kb on + strand, within MPMX20_04579 at 4791.792 kb on + strand, within MPMX20_04579 at 4791.807 kb on + strand, within MPMX20_04579 at 4791.835 kb on - strand, within MPMX20_04579 at 4791.894 kb on - strand, within MPMX20_04579 at 4792.016 kb on - strand at 4792.016 kb on - strand at 4792.059 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,789,493 + -0.1 4,789,501 - -0.4 4,789,501 - +1.1 4,789,536 + -1.1 4,789,567 + +1.0 4,789,581 + -1.6 4,789,581 + +0.3 4,789,589 - +0.0 4,789,589 - +0.6 4,789,589 - -0.2 4,789,589 - -0.7 4,789,632 + +1.8 4,789,725 + MPMX20_04577 0.16 -0.7 4,789,730 + MPMX20_04577 0.16 +1.3 4,789,730 + MPMX20_04577 0.16 -0.7 4,789,777 + MPMX20_04577 0.21 +1.4 4,789,785 - MPMX20_04577 0.22 -0.7 4,789,809 + MPMX20_04577 0.25 -0.2 4,789,811 + MPMX20_04577 0.25 +0.6 4,789,817 - MPMX20_04577 0.26 -0.9 4,789,817 - MPMX20_04577 0.26 +5.9 4,789,880 + MPMX20_04577 0.33 -0.7 4,789,881 + MPMX20_04577 0.33 -1.7 4,789,897 + MPMX20_04577 0.35 +1.3 4,789,897 + MPMX20_04577 0.35 -0.3 4,789,897 + MPMX20_04577 0.35 -0.1 4,789,900 - MPMX20_04577 0.35 -0.4 4,789,905 - MPMX20_04577 0.35 +0.8 4,789,907 + MPMX20_04577 0.36 +0.7 4,789,915 - MPMX20_04577 0.37 +0.3 4,789,925 + MPMX20_04577 0.38 +0.1 4,789,930 - MPMX20_04577 0.38 +1.1 4,790,031 + MPMX20_04577 0.49 +0.6 4,790,075 - MPMX20_04577 0.54 -0.2 4,790,079 - MPMX20_04577 0.55 +0.6 4,790,109 + MPMX20_04577 0.58 +0.3 4,790,226 - MPMX20_04577 0.71 +2.7 4,790,282 + MPMX20_04577 0.77 +0.6 4,790,282 + MPMX20_04577 0.77 -0.5 4,790,292 + MPMX20_04577 0.78 -0.6 4,790,292 + MPMX20_04577 0.78 -0.9 4,790,329 + MPMX20_04577 0.82 +0.1 4,790,401 - -0.2 4,790,422 + -0.4 4,790,432 + -0.4 4,790,510 - +0.1 4,790,520 - -1.2 4,790,637 - MPMX20_04578 0.24 -1.2 4,790,649 - MPMX20_04578 0.26 +1.4 4,790,786 + MPMX20_04578 0.47 +1.8 4,790,794 - MPMX20_04578 0.49 +0.2 4,790,811 + MPMX20_04578 0.51 -0.3 4,790,884 - MPMX20_04578 0.63 -0.2 4,790,929 + MPMX20_04578 0.70 -1.4 4,791,027 + MPMX20_04578 0.85 -1.5 4,791,027 + MPMX20_04578 0.85 -0.7 4,791,027 + MPMX20_04578 0.85 +0.5 4,791,035 - MPMX20_04578 0.87 -1.1 4,791,044 - MPMX20_04578 0.88 -1.3 4,791,061 - -0.7 4,791,074 - -0.2 4,791,135 + -0.4 4,791,151 - -1.6 4,791,198 - +0.1 4,791,203 + +2.7 4,791,211 + MPMX20_04579 0.10 -2.0 4,791,261 - MPMX20_04579 0.16 -0.1 4,791,292 + MPMX20_04579 0.19 +1.1 4,791,332 - MPMX20_04579 0.23 +1.0 4,791,376 + MPMX20_04579 0.28 +0.7 4,791,376 + MPMX20_04579 0.28 +4.6 4,791,376 + MPMX20_04579 0.28 +2.6 4,791,376 + MPMX20_04579 0.28 +2.4 4,791,376 + MPMX20_04579 0.28 -0.2 4,791,376 + MPMX20_04579 0.28 -0.9 4,791,376 + MPMX20_04579 0.28 +0.2 4,791,376 + MPMX20_04579 0.28 +0.3 4,791,376 + MPMX20_04579 0.28 +0.1 4,791,376 + MPMX20_04579 0.28 -0.7 4,791,376 + MPMX20_04579 0.28 +0.3 4,791,376 + MPMX20_04579 0.28 -1.0 4,791,376 + MPMX20_04579 0.28 +0.8 4,791,376 + MPMX20_04579 0.28 +1.1 4,791,376 + MPMX20_04579 0.28 -0.1 4,791,384 - MPMX20_04579 0.29 -0.4 4,791,384 - MPMX20_04579 0.29 -0.4 4,791,384 - MPMX20_04579 0.29 +0.8 4,791,384 - MPMX20_04579 0.29 +1.8 4,791,384 - MPMX20_04579 0.29 +0.6 4,791,384 - MPMX20_04579 0.29 -0.7 4,791,384 - MPMX20_04579 0.29 +0.8 4,791,384 - MPMX20_04579 0.29 +0.6 4,791,384 - MPMX20_04579 0.29 +0.6 4,791,384 - MPMX20_04579 0.29 -0.7 4,791,423 + MPMX20_04579 0.33 -0.6 4,791,423 + MPMX20_04579 0.33 -0.9 4,791,431 + MPMX20_04579 0.34 -1.0 4,791,431 - MPMX20_04579 0.34 +0.6 4,791,439 - MPMX20_04579 0.35 +0.4 4,791,469 + MPMX20_04579 0.38 +0.1 4,791,474 + MPMX20_04579 0.38 -0.7 4,791,477 - MPMX20_04579 0.39 -0.4 4,791,523 + MPMX20_04579 0.44 -0.3 4,791,555 - MPMX20_04579 0.47 -1.6 4,791,568 + MPMX20_04579 0.49 -0.4 4,791,696 + MPMX20_04579 0.62 -1.2 4,791,704 - MPMX20_04579 0.63 -0.4 4,791,732 - MPMX20_04579 0.66 +1.1 4,791,756 + MPMX20_04579 0.69 -0.5 4,791,792 + MPMX20_04579 0.73 -0.6 4,791,807 + MPMX20_04579 0.74 -0.6 4,791,835 - MPMX20_04579 0.77 +1.1 4,791,894 - MPMX20_04579 0.84 -1.3 4,792,016 - +0.6 4,792,016 - -1.1 4,792,059 - +1.1
Or see this region's nucleotide sequence