Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04459

Experiment: TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_04458 and MPMX20_04459 are separated by 27 nucleotidesMPMX20_04459 and MPMX20_04460 are separated by 161 nucleotidesMPMX20_04460 and MPMX20_04461 are separated by 51 nucleotides MPMX20_04458: MPMX20_04458 - ATP-dependent DNA helicase RecQ, at 4,660,872 to 4,662,764 _04458 MPMX20_04459: MPMX20_04459 - Phospholipase A1, at 4,662,792 to 4,663,661 _04459 MPMX20_04460: MPMX20_04460 - hypothetical protein, at 4,663,823 to 4,664,290 _04460 MPMX20_04461: MPMX20_04461 - Protein RarD, at 4,664,342 to 4,665,238 _04461 Position (kb) 4662 4663 4664Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 4661.944 kb on + strand, within MPMX20_04458at 4661.958 kb on - strand, within MPMX20_04458at 4662.002 kb on + strand, within MPMX20_04458at 4662.002 kb on + strand, within MPMX20_04458at 4662.083 kb on - strand, within MPMX20_04458at 4662.267 kb on - strand, within MPMX20_04458at 4662.347 kb on - strand, within MPMX20_04458at 4662.367 kb on - strand, within MPMX20_04458at 4662.376 kb on + strand, within MPMX20_04458at 4662.384 kb on - strand, within MPMX20_04458at 4662.436 kb on - strand, within MPMX20_04458at 4662.512 kb on + strand, within MPMX20_04458at 4662.535 kb on - strand, within MPMX20_04458at 4662.535 kb on - strand, within MPMX20_04458at 4662.609 kb on + strandat 4662.609 kb on + strandat 4662.619 kb on + strandat 4662.627 kb on - strandat 4662.701 kb on + strandat 4662.709 kb on - strandat 4662.816 kb on + strandat 4662.821 kb on + strandat 4662.821 kb on + strandat 4662.824 kb on - strandat 4662.824 kb on - strandat 4662.829 kb on - strandat 4662.829 kb on - strandat 4662.829 kb on - strandat 4662.829 kb on - strandat 4662.863 kb on + strandat 4662.882 kb on - strand, within MPMX20_04459at 4662.894 kb on - strand, within MPMX20_04459at 4662.929 kb on + strand, within MPMX20_04459at 4662.947 kb on - strand, within MPMX20_04459at 4662.960 kb on + strand, within MPMX20_04459at 4662.960 kb on + strand, within MPMX20_04459at 4662.988 kb on + strand, within MPMX20_04459at 4663.003 kb on - strand, within MPMX20_04459at 4663.006 kb on + strand, within MPMX20_04459at 4663.024 kb on + strand, within MPMX20_04459at 4663.024 kb on + strand, within MPMX20_04459at 4663.024 kb on - strand, within MPMX20_04459at 4663.024 kb on - strand, within MPMX20_04459at 4663.058 kb on - strand, within MPMX20_04459at 4663.075 kb on - strand, within MPMX20_04459at 4663.075 kb on - strand, within MPMX20_04459at 4663.118 kb on + strand, within MPMX20_04459at 4663.141 kb on - strand, within MPMX20_04459at 4663.153 kb on + strand, within MPMX20_04459at 4663.161 kb on - strand, within MPMX20_04459at 4663.189 kb on + strand, within MPMX20_04459at 4663.198 kb on - strand, within MPMX20_04459at 4663.198 kb on - strand, within MPMX20_04459at 4663.198 kb on - strand, within MPMX20_04459at 4663.248 kb on + strand, within MPMX20_04459at 4663.384 kb on + strand, within MPMX20_04459at 4663.438 kb on - strand, within MPMX20_04459at 4663.549 kb on + strand, within MPMX20_04459at 4663.552 kb on - strand, within MPMX20_04459at 4663.562 kb on - strand, within MPMX20_04459at 4663.602 kb on + strandat 4663.610 kb on - strandat 4663.612 kb on + strandat 4663.612 kb on + strandat 4663.617 kb on + strandat 4663.620 kb on - strandat 4663.644 kb on + strandat 4663.644 kb on + strandat 4663.644 kb on + strandat 4663.644 kb on + strandat 4663.647 kb on - strandat 4663.647 kb on - strandat 4663.652 kb on - strandat 4663.652 kb on - strandat 4663.652 kb on - strandat 4663.652 kb on - strandat 4663.652 kb on - strandat 4663.667 kb on + strandat 4663.667 kb on + strandat 4663.667 kb on - strandat 4663.682 kb on + strandat 4663.891 kb on + strand, within MPMX20_04460at 4663.897 kb on - strand, within MPMX20_04460at 4663.943 kb on - strand, within MPMX20_04460at 4663.980 kb on + strand, within MPMX20_04460at 4663.988 kb on - strand, within MPMX20_04460at 4664.016 kb on + strand, within MPMX20_04460at 4664.047 kb on - strand, within MPMX20_04460at 4664.147 kb on - strand, within MPMX20_04460at 4664.192 kb on - strand, within MPMX20_04460at 4664.208 kb on + strand, within MPMX20_04460at 4664.238 kb on + strand, within MPMX20_04460at 4664.243 kb on + strand, within MPMX20_04460at 4664.248 kb on + strandat 4664.248 kb on + strandat 4664.248 kb on + strandat 4664.248 kb on + strandat 4664.248 kb on + strandat 4664.248 kb on + strandat 4664.256 kb on - strandat 4664.256 kb on - strandat 4664.256 kb on - strandat 4664.275 kb on - strandat 4664.282 kb on - strandat 4664.365 kb on + strandat 4664.380 kb on - strandat 4664.380 kb on - strandat 4664.387 kb on - strandat 4664.455 kb on - strand, within MPMX20_04461at 4664.503 kb on - strand, within MPMX20_04461at 4664.511 kb on + strand, within MPMX20_04461at 4664.513 kb on - strand, within MPMX20_04461at 4664.556 kb on + strand, within MPMX20_04461at 4664.572 kb on + strand, within MPMX20_04461at 4664.584 kb on + strand, within MPMX20_04461at 4664.614 kb on - strand, within MPMX20_04461at 4664.614 kb on - strand, within MPMX20_04461at 4664.638 kb on + strand, within MPMX20_04461at 4664.643 kb on + strand, within MPMX20_04461at 4664.643 kb on + strand, within MPMX20_04461

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,661,944 + MPMX20_04458 0.57 -2.5
4,661,958 - MPMX20_04458 0.57 -0.5
4,662,002 + MPMX20_04458 0.60 +0.4
4,662,002 + MPMX20_04458 0.60 -0.7
4,662,083 - MPMX20_04458 0.64 +1.4
4,662,267 - MPMX20_04458 0.74 +1.1
4,662,347 - MPMX20_04458 0.78 +1.1
4,662,367 - MPMX20_04458 0.79 -0.9
4,662,376 + MPMX20_04458 0.79 -0.7
4,662,384 - MPMX20_04458 0.80 +0.3
4,662,436 - MPMX20_04458 0.83 -0.9
4,662,512 + MPMX20_04458 0.87 -0.6
4,662,535 - MPMX20_04458 0.88 +2.4
4,662,535 - MPMX20_04458 0.88 -0.2
4,662,609 + -0.1
4,662,609 + -1.3
4,662,619 + -1.0
4,662,627 - -0.5
4,662,701 + -1.2
4,662,709 - -0.0
4,662,816 + +2.1
4,662,821 + -3.0
4,662,821 + +1.9
4,662,824 - +0.8
4,662,824 - -0.5
4,662,829 - -0.4
4,662,829 - -1.7
4,662,829 - -0.9
4,662,829 - +2.4
4,662,863 + +0.5
4,662,882 - MPMX20_04459 0.10 -0.3
4,662,894 - MPMX20_04459 0.12 -0.5
4,662,929 + MPMX20_04459 0.16 -0.5
4,662,947 - MPMX20_04459 0.18 +0.1
4,662,960 + MPMX20_04459 0.19 +1.1
4,662,960 + MPMX20_04459 0.19 +0.1
4,662,988 + MPMX20_04459 0.23 -0.8
4,663,003 - MPMX20_04459 0.24 -1.5
4,663,006 + MPMX20_04459 0.25 +0.1
4,663,024 + MPMX20_04459 0.27 +0.5
4,663,024 + MPMX20_04459 0.27 -0.7
4,663,024 - MPMX20_04459 0.27 -0.5
4,663,024 - MPMX20_04459 0.27 +0.5
4,663,058 - MPMX20_04459 0.31 -1.4
4,663,075 - MPMX20_04459 0.33 -0.2
4,663,075 - MPMX20_04459 0.33 -2.5
4,663,118 + MPMX20_04459 0.37 -0.7
4,663,141 - MPMX20_04459 0.40 -1.0
4,663,153 + MPMX20_04459 0.41 -1.8
4,663,161 - MPMX20_04459 0.42 -0.5
4,663,189 + MPMX20_04459 0.46 -0.0
4,663,198 - MPMX20_04459 0.47 -2.3
4,663,198 - MPMX20_04459 0.47 -1.3
4,663,198 - MPMX20_04459 0.47 +1.3
4,663,248 + MPMX20_04459 0.52 -0.5
4,663,384 + MPMX20_04459 0.68 +0.8
4,663,438 - MPMX20_04459 0.74 -1.6
4,663,549 + MPMX20_04459 0.87 +0.7
4,663,552 - MPMX20_04459 0.87 -1.5
4,663,562 - MPMX20_04459 0.89 +0.1
4,663,602 + +0.4
4,663,610 - -0.4
4,663,612 + +0.5
4,663,612 + +0.2
4,663,617 + +0.1
4,663,620 - -1.9
4,663,644 + -1.5
4,663,644 + +1.8
4,663,644 + +0.3
4,663,644 + -0.5
4,663,647 - -0.0
4,663,647 - +0.1
4,663,652 - -2.3
4,663,652 - -0.7
4,663,652 - -1.0
4,663,652 - -1.2
4,663,652 - +0.5
4,663,667 + -0.7
4,663,667 + +0.1
4,663,667 - -0.6
4,663,682 + -1.5
4,663,891 + MPMX20_04460 0.15 +0.7
4,663,897 - MPMX20_04460 0.16 +0.1
4,663,943 - MPMX20_04460 0.26 +0.7
4,663,980 + MPMX20_04460 0.34 -1.2
4,663,988 - MPMX20_04460 0.35 +0.5
4,664,016 + MPMX20_04460 0.41 +1.1
4,664,047 - MPMX20_04460 0.48 -0.5
4,664,147 - MPMX20_04460 0.69 +0.7
4,664,192 - MPMX20_04460 0.79 +0.9
4,664,208 + MPMX20_04460 0.82 +2.1
4,664,238 + MPMX20_04460 0.89 +0.1
4,664,243 + MPMX20_04460 0.90 -0.7
4,664,248 + +0.5
4,664,248 + -1.5
4,664,248 + -0.3
4,664,248 + -0.5
4,664,248 + -0.7
4,664,248 + -0.4
4,664,256 - -1.0
4,664,256 - -1.7
4,664,256 - -0.6
4,664,275 - -0.7
4,664,282 - -0.7
4,664,365 + +3.1
4,664,380 - +1.5
4,664,380 - +0.6
4,664,387 - +1.1
4,664,455 - MPMX20_04461 0.13 +0.3
4,664,503 - MPMX20_04461 0.18 +0.2
4,664,511 + MPMX20_04461 0.19 -0.7
4,664,513 - MPMX20_04461 0.19 +0.8
4,664,556 + MPMX20_04461 0.24 -1.5
4,664,572 + MPMX20_04461 0.26 +0.1
4,664,584 + MPMX20_04461 0.27 -0.8
4,664,614 - MPMX20_04461 0.30 +6.1
4,664,614 - MPMX20_04461 0.30 +2.7
4,664,638 + MPMX20_04461 0.33 -3.0
4,664,643 + MPMX20_04461 0.34 -0.3
4,664,643 + MPMX20_04461 0.34 +0.1

Or see this region's nucleotide sequence