Experiment: TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03129 and MPMX20_03130 are separated by 64 nucleotides MPMX20_03130 and MPMX20_03131 are separated by 47 nucleotides
MPMX20_03129: MPMX20_03129 - hypothetical protein, at 3,288,035 to 3,289,081
_03129
MPMX20_03130: MPMX20_03130 - Endonuclease 4, at 3,289,146 to 3,290,003
_03130
MPMX20_03131: MPMX20_03131 - PTS system fructose-specific EIIB'BC component, at 3,290,051 to 3,291,733
_03131
Position (kb)
3289
3290
3291 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 3288.166 kb on - strand, within MPMX20_03129 at 3288.168 kb on + strand, within MPMX20_03129 at 3288.175 kb on - strand, within MPMX20_03129 at 3288.282 kb on + strand, within MPMX20_03129 at 3288.290 kb on - strand, within MPMX20_03129 at 3288.302 kb on + strand, within MPMX20_03129 at 3288.302 kb on + strand, within MPMX20_03129 at 3288.302 kb on + strand, within MPMX20_03129 at 3288.310 kb on - strand, within MPMX20_03129 at 3288.383 kb on - strand, within MPMX20_03129 at 3288.407 kb on + strand, within MPMX20_03129 at 3288.478 kb on + strand, within MPMX20_03129 at 3288.504 kb on - strand, within MPMX20_03129 at 3288.578 kb on + strand, within MPMX20_03129 at 3288.603 kb on + strand, within MPMX20_03129 at 3288.607 kb on - strand, within MPMX20_03129 at 3288.611 kb on - strand, within MPMX20_03129 at 3288.611 kb on - strand, within MPMX20_03129 at 3288.669 kb on - strand, within MPMX20_03129 at 3288.681 kb on + strand, within MPMX20_03129 at 3288.737 kb on + strand, within MPMX20_03129 at 3288.740 kb on - strand, within MPMX20_03129 at 3288.742 kb on + strand, within MPMX20_03129 at 3288.829 kb on - strand, within MPMX20_03129 at 3288.865 kb on - strand, within MPMX20_03129 at 3288.865 kb on - strand, within MPMX20_03129 at 3288.867 kb on - strand, within MPMX20_03129 at 3288.888 kb on - strand, within MPMX20_03129 at 3288.964 kb on + strand, within MPMX20_03129 at 3288.972 kb on - strand, within MPMX20_03129 at 3289.016 kb on + strand at 3289.024 kb on - strand at 3289.061 kb on + strand at 3289.061 kb on + strand at 3289.061 kb on + strand at 3289.061 kb on + strand at 3289.066 kb on - strand at 3289.069 kb on - strand at 3289.161 kb on - strand at 3289.164 kb on + strand at 3289.174 kb on - strand at 3289.174 kb on - strand at 3289.174 kb on - strand at 3289.174 kb on - strand at 3289.174 kb on - strand at 3289.269 kb on + strand, within MPMX20_03130 at 3289.277 kb on - strand, within MPMX20_03130 at 3289.277 kb on - strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.279 kb on + strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.287 kb on - strand, within MPMX20_03130 at 3289.547 kb on + strand, within MPMX20_03130 at 3289.547 kb on + strand, within MPMX20_03130 at 3289.595 kb on + strand, within MPMX20_03130 at 3289.687 kb on + strand, within MPMX20_03130 at 3289.720 kb on + strand, within MPMX20_03130 at 3289.728 kb on - strand, within MPMX20_03130 at 3289.948 kb on + strand at 3289.951 kb on - strand at 3289.951 kb on - strand at 3290.095 kb on - strand at 3290.097 kb on + strand at 3290.097 kb on + strand at 3290.097 kb on + strand at 3290.097 kb on + strand at 3290.103 kb on - strand at 3290.109 kb on + strand at 3290.110 kb on - strand at 3290.152 kb on + strand at 3290.246 kb on - strand, within MPMX20_03131 at 3290.255 kb on + strand, within MPMX20_03131 at 3290.263 kb on - strand, within MPMX20_03131 at 3290.265 kb on + strand, within MPMX20_03131 at 3290.294 kb on - strand, within MPMX20_03131 at 3290.338 kb on + strand, within MPMX20_03131 at 3290.346 kb on - strand, within MPMX20_03131 at 3290.465 kb on + strand, within MPMX20_03131 at 3290.465 kb on + strand, within MPMX20_03131 at 3290.472 kb on + strand, within MPMX20_03131 at 3290.473 kb on - strand, within MPMX20_03131 at 3290.490 kb on - strand, within MPMX20_03131 at 3290.513 kb on - strand, within MPMX20_03131 at 3290.556 kb on + strand, within MPMX20_03131 at 3290.556 kb on + strand, within MPMX20_03131 at 3290.559 kb on - strand, within MPMX20_03131 at 3290.603 kb on + strand, within MPMX20_03131 at 3290.611 kb on - strand, within MPMX20_03131 at 3290.611 kb on - strand, within MPMX20_03131 at 3290.620 kb on - strand, within MPMX20_03131 at 3290.662 kb on - strand, within MPMX20_03131 at 3290.710 kb on + strand, within MPMX20_03131 at 3290.710 kb on + strand, within MPMX20_03131 at 3290.712 kb on + strand, within MPMX20_03131 at 3290.712 kb on + strand, within MPMX20_03131 at 3290.712 kb on + strand, within MPMX20_03131 at 3290.718 kb on - strand, within MPMX20_03131 at 3290.720 kb on - strand, within MPMX20_03131 at 3290.720 kb on - strand, within MPMX20_03131 at 3290.905 kb on + strand, within MPMX20_03131 at 3290.997 kb on + strand, within MPMX20_03131
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,288,166 - MPMX20_03129 0.13 +1.2 3,288,168 + MPMX20_03129 0.13 -0.7 3,288,175 - MPMX20_03129 0.13 +0.1 3,288,282 + MPMX20_03129 0.24 +5.0 3,288,290 - MPMX20_03129 0.24 -0.0 3,288,302 + MPMX20_03129 0.26 -0.4 3,288,302 + MPMX20_03129 0.26 -0.7 3,288,302 + MPMX20_03129 0.26 -0.1 3,288,310 - MPMX20_03129 0.26 -0.8 3,288,383 - MPMX20_03129 0.33 -1.4 3,288,407 + MPMX20_03129 0.36 +1.2 3,288,478 + MPMX20_03129 0.42 -1.7 3,288,504 - MPMX20_03129 0.45 +0.2 3,288,578 + MPMX20_03129 0.52 +2.0 3,288,603 + MPMX20_03129 0.54 +0.0 3,288,607 - MPMX20_03129 0.55 -0.0 3,288,611 - MPMX20_03129 0.55 -0.4 3,288,611 - MPMX20_03129 0.55 +0.2 3,288,669 - MPMX20_03129 0.61 -0.8 3,288,681 + MPMX20_03129 0.62 -0.3 3,288,737 + MPMX20_03129 0.67 -0.5 3,288,740 - MPMX20_03129 0.67 -1.0 3,288,742 + MPMX20_03129 0.68 +0.0 3,288,829 - MPMX20_03129 0.76 +1.0 3,288,865 - MPMX20_03129 0.79 -1.0 3,288,865 - MPMX20_03129 0.79 -1.2 3,288,867 - MPMX20_03129 0.79 +0.2 3,288,888 - MPMX20_03129 0.81 +0.1 3,288,964 + MPMX20_03129 0.89 +0.6 3,288,972 - MPMX20_03129 0.89 +2.6 3,289,016 + +0.2 3,289,024 - -0.0 3,289,061 + -1.3 3,289,061 + +0.4 3,289,061 + -0.5 3,289,061 + +0.6 3,289,066 - -0.6 3,289,069 - -0.0 3,289,161 - -0.7 3,289,164 + -0.4 3,289,174 - +2.2 3,289,174 - -0.9 3,289,174 - +0.5 3,289,174 - -0.3 3,289,174 - -1.8 3,289,269 + MPMX20_03130 0.14 -1.0 3,289,277 - MPMX20_03130 0.15 -0.9 3,289,277 - MPMX20_03130 0.15 +2.8 3,289,279 + MPMX20_03130 0.16 -1.2 3,289,279 + MPMX20_03130 0.16 -0.7 3,289,279 + MPMX20_03130 0.16 +0.0 3,289,279 + MPMX20_03130 0.16 -0.6 3,289,279 + MPMX20_03130 0.16 +0.4 3,289,279 + MPMX20_03130 0.16 -1.5 3,289,279 + MPMX20_03130 0.16 -0.3 3,289,279 + MPMX20_03130 0.16 -1.7 3,289,279 + MPMX20_03130 0.16 +0.6 3,289,279 + MPMX20_03130 0.16 -1.3 3,289,279 + MPMX20_03130 0.16 -0.8 3,289,279 + MPMX20_03130 0.16 -0.8 3,289,279 + MPMX20_03130 0.16 -0.4 3,289,279 + MPMX20_03130 0.16 -1.2 3,289,287 - MPMX20_03130 0.16 +0.6 3,289,287 - MPMX20_03130 0.16 -0.0 3,289,287 - MPMX20_03130 0.16 +0.6 3,289,287 - MPMX20_03130 0.16 -0.2 3,289,287 - MPMX20_03130 0.16 -1.5 3,289,287 - MPMX20_03130 0.16 -0.8 3,289,287 - MPMX20_03130 0.16 -0.8 3,289,287 - MPMX20_03130 0.16 +0.6 3,289,287 - MPMX20_03130 0.16 +0.1 3,289,287 - MPMX20_03130 0.16 +0.2 3,289,287 - MPMX20_03130 0.16 -1.6 3,289,287 - MPMX20_03130 0.16 +0.2 3,289,287 - MPMX20_03130 0.16 -0.4 3,289,287 - MPMX20_03130 0.16 +1.2 3,289,547 + MPMX20_03130 0.47 +0.6 3,289,547 + MPMX20_03130 0.47 -0.9 3,289,595 + MPMX20_03130 0.52 +1.6 3,289,687 + MPMX20_03130 0.63 -1.4 3,289,720 + MPMX20_03130 0.67 +1.1 3,289,728 - MPMX20_03130 0.68 -0.6 3,289,948 + +0.5 3,289,951 - -0.9 3,289,951 - -1.1 3,290,095 - +0.9 3,290,097 + -1.4 3,290,097 + +0.3 3,290,097 + +0.4 3,290,097 + -1.5 3,290,103 - -1.9 3,290,109 + -2.7 3,290,110 - +1.0 3,290,152 + -0.2 3,290,246 - MPMX20_03131 0.12 +1.5 3,290,255 + MPMX20_03131 0.12 +1.6 3,290,263 - MPMX20_03131 0.13 +0.1 3,290,265 + MPMX20_03131 0.13 +0.6 3,290,294 - MPMX20_03131 0.14 -0.5 3,290,338 + MPMX20_03131 0.17 -1.7 3,290,346 - MPMX20_03131 0.18 +0.9 3,290,465 + MPMX20_03131 0.25 -0.3 3,290,465 + MPMX20_03131 0.25 +1.2 3,290,472 + MPMX20_03131 0.25 +2.3 3,290,473 - MPMX20_03131 0.25 +3.5 3,290,490 - MPMX20_03131 0.26 -1.0 3,290,513 - MPMX20_03131 0.27 -0.8 3,290,556 + MPMX20_03131 0.30 +0.2 3,290,556 + MPMX20_03131 0.30 -0.4 3,290,559 - MPMX20_03131 0.30 -1.0 3,290,603 + MPMX20_03131 0.33 +1.0 3,290,611 - MPMX20_03131 0.33 +1.2 3,290,611 - MPMX20_03131 0.33 -0.2 3,290,620 - MPMX20_03131 0.34 -0.8 3,290,662 - MPMX20_03131 0.36 -0.3 3,290,710 + MPMX20_03131 0.39 -0.4 3,290,710 + MPMX20_03131 0.39 -1.4 3,290,712 + MPMX20_03131 0.39 +0.4 3,290,712 + MPMX20_03131 0.39 +0.2 3,290,712 + MPMX20_03131 0.39 +3.8 3,290,718 - MPMX20_03131 0.40 +0.2 3,290,720 - MPMX20_03131 0.40 -0.3 3,290,720 - MPMX20_03131 0.40 +0.2 3,290,905 + MPMX20_03131 0.51 +0.7 3,290,997 + MPMX20_03131 0.56 -1.2
Or see this region's nucleotide sequence