Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03098

Experiment: TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_03096 and MPMX20_03097 overlap by 17 nucleotidesMPMX20_03097 and MPMX20_03098 overlap by 8 nucleotidesMPMX20_03098 and MPMX20_03099 are separated by 12 nucleotides MPMX20_03096: MPMX20_03096 - Glycine betaine uptake system permease protein YehW, at 3,248,401 to 3,249,138 _03096 MPMX20_03097: MPMX20_03097 - Glycine betaine uptake system ATP-binding protein YehX, at 3,249,122 to 3,250,072 _03097 MPMX20_03098: MPMX20_03098 - Glycine betaine uptake system permease protein YehY, at 3,250,065 to 3,251,222 _03098 MPMX20_03099: MPMX20_03099 - Glycine betaine-binding protein YehZ, at 3,251,235 to 3,252,152 _03099 Position (kb) 3250 3251 3252Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3249.107 kb on + strandat 3249.115 kb on - strandat 3249.139 kb on - strandat 3249.146 kb on - strandat 3249.183 kb on - strandat 3249.263 kb on + strand, within MPMX20_03097at 3249.332 kb on - strand, within MPMX20_03097at 3249.409 kb on - strand, within MPMX20_03097at 3249.492 kb on - strand, within MPMX20_03097at 3249.517 kb on + strand, within MPMX20_03097at 3249.547 kb on - strand, within MPMX20_03097at 3249.610 kb on - strand, within MPMX20_03097at 3249.660 kb on - strand, within MPMX20_03097at 3249.699 kb on + strand, within MPMX20_03097at 3249.700 kb on + strand, within MPMX20_03097at 3249.700 kb on + strand, within MPMX20_03097at 3249.708 kb on - strand, within MPMX20_03097at 3249.708 kb on - strand, within MPMX20_03097at 3249.833 kb on + strand, within MPMX20_03097at 3249.899 kb on + strand, within MPMX20_03097at 3249.899 kb on + strand, within MPMX20_03097at 3249.907 kb on - strand, within MPMX20_03097at 3250.076 kb on + strandat 3250.081 kb on + strandat 3250.089 kb on - strandat 3250.089 kb on - strandat 3250.089 kb on - strandat 3250.141 kb on - strandat 3250.167 kb on + strandat 3250.179 kb on + strandat 3250.179 kb on + strandat 3250.213 kb on - strand, within MPMX20_03098at 3250.213 kb on - strand, within MPMX20_03098at 3250.232 kb on - strand, within MPMX20_03098at 3250.249 kb on - strand, within MPMX20_03098at 3250.279 kb on - strand, within MPMX20_03098at 3250.349 kb on - strand, within MPMX20_03098at 3250.349 kb on - strand, within MPMX20_03098at 3250.370 kb on + strand, within MPMX20_03098at 3250.560 kb on + strand, within MPMX20_03098at 3250.595 kb on - strand, within MPMX20_03098at 3250.601 kb on - strand, within MPMX20_03098at 3250.607 kb on + strand, within MPMX20_03098at 3250.639 kb on - strand, within MPMX20_03098at 3250.762 kb on - strand, within MPMX20_03098at 3250.767 kb on - strand, within MPMX20_03098at 3250.767 kb on - strand, within MPMX20_03098at 3250.767 kb on - strand, within MPMX20_03098at 3250.770 kb on - strand, within MPMX20_03098at 3250.869 kb on - strand, within MPMX20_03098at 3250.871 kb on + strand, within MPMX20_03098at 3250.874 kb on - strand, within MPMX20_03098at 3250.879 kb on - strand, within MPMX20_03098at 3250.879 kb on - strand, within MPMX20_03098at 3250.906 kb on + strand, within MPMX20_03098at 3250.906 kb on - strand, within MPMX20_03098at 3250.932 kb on + strand, within MPMX20_03098at 3250.932 kb on + strand, within MPMX20_03098at 3250.940 kb on - strand, within MPMX20_03098at 3250.960 kb on + strand, within MPMX20_03098at 3250.977 kb on + strand, within MPMX20_03098at 3250.995 kb on - strand, within MPMX20_03098at 3251.010 kb on - strand, within MPMX20_03098at 3251.094 kb on + strand, within MPMX20_03098at 3251.094 kb on - strand, within MPMX20_03098at 3251.224 kb on + strandat 3251.227 kb on - strandat 3251.356 kb on + strand, within MPMX20_03099at 3251.364 kb on - strand, within MPMX20_03099at 3251.364 kb on - strand, within MPMX20_03099at 3251.386 kb on + strand, within MPMX20_03099at 3251.411 kb on - strand, within MPMX20_03099at 3251.571 kb on - strand, within MPMX20_03099at 3251.723 kb on + strand, within MPMX20_03099at 3251.731 kb on - strand, within MPMX20_03099at 3251.736 kb on - strand, within MPMX20_03099at 3251.799 kb on - strand, within MPMX20_03099at 3251.954 kb on + strand, within MPMX20_03099at 3251.954 kb on + strand, within MPMX20_03099at 3251.960 kb on - strand, within MPMX20_03099at 3252.027 kb on - strand, within MPMX20_03099at 3252.085 kb on - strandat 3252.085 kb on - strandat 3252.109 kb on + strandat 3252.111 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
3,249,107 + -0.7
3,249,115 - +2.2
3,249,139 - +0.8
3,249,146 - -1.2
3,249,183 - +2.5
3,249,263 + MPMX20_03097 0.15 +0.0
3,249,332 - MPMX20_03097 0.22 -0.3
3,249,409 - MPMX20_03097 0.30 -0.2
3,249,492 - MPMX20_03097 0.39 -1.4
3,249,517 + MPMX20_03097 0.42 +0.6
3,249,547 - MPMX20_03097 0.45 -0.0
3,249,610 - MPMX20_03097 0.51 +1.0
3,249,660 - MPMX20_03097 0.57 -0.3
3,249,699 + MPMX20_03097 0.61 +0.2
3,249,700 + MPMX20_03097 0.61 -0.3
3,249,700 + MPMX20_03097 0.61 -1.3
3,249,708 - MPMX20_03097 0.62 -1.3
3,249,708 - MPMX20_03097 0.62 +0.4
3,249,833 + MPMX20_03097 0.75 -0.7
3,249,899 + MPMX20_03097 0.82 +0.5
3,249,899 + MPMX20_03097 0.82 +0.1
3,249,907 - MPMX20_03097 0.83 +1.4
3,250,076 + +0.4
3,250,081 + +0.2
3,250,089 - +1.0
3,250,089 - -0.3
3,250,089 - +1.1
3,250,141 - -1.2
3,250,167 + -1.2
3,250,179 + -1.1
3,250,179 + +2.8
3,250,213 - MPMX20_03098 0.13 -1.4
3,250,213 - MPMX20_03098 0.13 +0.2
3,250,232 - MPMX20_03098 0.14 -2.7
3,250,249 - MPMX20_03098 0.16 -1.3
3,250,279 - MPMX20_03098 0.18 -2.3
3,250,349 - MPMX20_03098 0.25 -0.0
3,250,349 - MPMX20_03098 0.25 -0.2
3,250,370 + MPMX20_03098 0.26 -0.3
3,250,560 + MPMX20_03098 0.43 -1.4
3,250,595 - MPMX20_03098 0.46 -0.9
3,250,601 - MPMX20_03098 0.46 -0.7
3,250,607 + MPMX20_03098 0.47 -0.1
3,250,639 - MPMX20_03098 0.50 -0.2
3,250,762 - MPMX20_03098 0.60 +0.2
3,250,767 - MPMX20_03098 0.61 -1.8
3,250,767 - MPMX20_03098 0.61 -0.6
3,250,767 - MPMX20_03098 0.61 +0.2
3,250,770 - MPMX20_03098 0.61 -0.6
3,250,869 - MPMX20_03098 0.69 +2.9
3,250,871 + MPMX20_03098 0.70 -1.2
3,250,874 - MPMX20_03098 0.70 -1.8
3,250,879 - MPMX20_03098 0.70 -0.4
3,250,879 - MPMX20_03098 0.70 -0.4
3,250,906 + MPMX20_03098 0.73 +0.8
3,250,906 - MPMX20_03098 0.73 +1.2
3,250,932 + MPMX20_03098 0.75 -1.5
3,250,932 + MPMX20_03098 0.75 -1.4
3,250,940 - MPMX20_03098 0.76 -1.5
3,250,960 + MPMX20_03098 0.77 -0.4
3,250,977 + MPMX20_03098 0.79 -0.7
3,250,995 - MPMX20_03098 0.80 -2.1
3,251,010 - MPMX20_03098 0.82 -1.7
3,251,094 + MPMX20_03098 0.89 +0.7
3,251,094 - MPMX20_03098 0.89 +1.2
3,251,224 + -1.7
3,251,227 - -1.2
3,251,356 + MPMX20_03099 0.13 +0.3
3,251,364 - MPMX20_03099 0.14 +2.2
3,251,364 - MPMX20_03099 0.14 -0.4
3,251,386 + MPMX20_03099 0.16 +1.4
3,251,411 - MPMX20_03099 0.19 -1.1
3,251,571 - MPMX20_03099 0.37 +0.2
3,251,723 + MPMX20_03099 0.53 -1.4
3,251,731 - MPMX20_03099 0.54 -2.4
3,251,736 - MPMX20_03099 0.55 -1.0
3,251,799 - MPMX20_03099 0.61 -0.2
3,251,954 + MPMX20_03099 0.78 -1.5
3,251,954 + MPMX20_03099 0.78 -0.3
3,251,960 - MPMX20_03099 0.79 +0.2
3,252,027 - MPMX20_03099 0.86 +0.2
3,252,085 - -0.8
3,252,085 - -0.1
3,252,109 + -0.1
3,252,111 + -2.5

Or see this region's nucleotide sequence