Experiment: TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03096 and MPMX20_03097 overlap by 17 nucleotides MPMX20_03097 and MPMX20_03098 overlap by 8 nucleotides MPMX20_03098 and MPMX20_03099 are separated by 12 nucleotides
MPMX20_03096: MPMX20_03096 - Glycine betaine uptake system permease protein YehW, at 3,248,401 to 3,249,138
_03096
MPMX20_03097: MPMX20_03097 - Glycine betaine uptake system ATP-binding protein YehX, at 3,249,122 to 3,250,072
_03097
MPMX20_03098: MPMX20_03098 - Glycine betaine uptake system permease protein YehY, at 3,250,065 to 3,251,222
_03098
MPMX20_03099: MPMX20_03099 - Glycine betaine-binding protein YehZ, at 3,251,235 to 3,252,152
_03099
Position (kb)
3250
3251
3252 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3249.107 kb on + strand at 3249.115 kb on - strand at 3249.139 kb on - strand at 3249.146 kb on - strand at 3249.183 kb on - strand at 3249.263 kb on + strand, within MPMX20_03097 at 3249.332 kb on - strand, within MPMX20_03097 at 3249.409 kb on - strand, within MPMX20_03097 at 3249.492 kb on - strand, within MPMX20_03097 at 3249.517 kb on + strand, within MPMX20_03097 at 3249.547 kb on - strand, within MPMX20_03097 at 3249.610 kb on - strand, within MPMX20_03097 at 3249.660 kb on - strand, within MPMX20_03097 at 3249.699 kb on + strand, within MPMX20_03097 at 3249.700 kb on + strand, within MPMX20_03097 at 3249.700 kb on + strand, within MPMX20_03097 at 3249.708 kb on - strand, within MPMX20_03097 at 3249.708 kb on - strand, within MPMX20_03097 at 3249.833 kb on + strand, within MPMX20_03097 at 3249.899 kb on + strand, within MPMX20_03097 at 3249.899 kb on + strand, within MPMX20_03097 at 3249.907 kb on - strand, within MPMX20_03097 at 3250.076 kb on + strand at 3250.081 kb on + strand at 3250.089 kb on - strand at 3250.089 kb on - strand at 3250.089 kb on - strand at 3250.141 kb on - strand at 3250.167 kb on + strand at 3250.179 kb on + strand at 3250.179 kb on + strand at 3250.213 kb on - strand, within MPMX20_03098 at 3250.213 kb on - strand, within MPMX20_03098 at 3250.232 kb on - strand, within MPMX20_03098 at 3250.249 kb on - strand, within MPMX20_03098 at 3250.279 kb on - strand, within MPMX20_03098 at 3250.349 kb on - strand, within MPMX20_03098 at 3250.349 kb on - strand, within MPMX20_03098 at 3250.370 kb on + strand, within MPMX20_03098 at 3250.560 kb on + strand, within MPMX20_03098 at 3250.595 kb on - strand, within MPMX20_03098 at 3250.601 kb on - strand, within MPMX20_03098 at 3250.607 kb on + strand, within MPMX20_03098 at 3250.639 kb on - strand, within MPMX20_03098 at 3250.762 kb on - strand, within MPMX20_03098 at 3250.767 kb on - strand, within MPMX20_03098 at 3250.767 kb on - strand, within MPMX20_03098 at 3250.767 kb on - strand, within MPMX20_03098 at 3250.770 kb on - strand, within MPMX20_03098 at 3250.869 kb on - strand, within MPMX20_03098 at 3250.871 kb on + strand, within MPMX20_03098 at 3250.874 kb on - strand, within MPMX20_03098 at 3250.879 kb on - strand, within MPMX20_03098 at 3250.879 kb on - strand, within MPMX20_03098 at 3250.906 kb on + strand, within MPMX20_03098 at 3250.906 kb on - strand, within MPMX20_03098 at 3250.932 kb on + strand, within MPMX20_03098 at 3250.932 kb on + strand, within MPMX20_03098 at 3250.940 kb on - strand, within MPMX20_03098 at 3250.960 kb on + strand, within MPMX20_03098 at 3250.977 kb on + strand, within MPMX20_03098 at 3250.995 kb on - strand, within MPMX20_03098 at 3251.010 kb on - strand, within MPMX20_03098 at 3251.094 kb on + strand, within MPMX20_03098 at 3251.094 kb on - strand, within MPMX20_03098 at 3251.224 kb on + strand at 3251.227 kb on - strand at 3251.356 kb on + strand, within MPMX20_03099 at 3251.364 kb on - strand, within MPMX20_03099 at 3251.364 kb on - strand, within MPMX20_03099 at 3251.386 kb on + strand, within MPMX20_03099 at 3251.411 kb on - strand, within MPMX20_03099 at 3251.571 kb on - strand, within MPMX20_03099 at 3251.723 kb on + strand, within MPMX20_03099 at 3251.731 kb on - strand, within MPMX20_03099 at 3251.736 kb on - strand, within MPMX20_03099 at 3251.799 kb on - strand, within MPMX20_03099 at 3251.954 kb on + strand, within MPMX20_03099 at 3251.954 kb on + strand, within MPMX20_03099 at 3251.960 kb on - strand, within MPMX20_03099 at 3252.027 kb on - strand, within MPMX20_03099 at 3252.085 kb on - strand at 3252.085 kb on - strand at 3252.109 kb on + strand at 3252.111 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,249,107 + -0.7 3,249,115 - +2.2 3,249,139 - +0.8 3,249,146 - -1.2 3,249,183 - +2.5 3,249,263 + MPMX20_03097 0.15 +0.0 3,249,332 - MPMX20_03097 0.22 -0.3 3,249,409 - MPMX20_03097 0.30 -0.2 3,249,492 - MPMX20_03097 0.39 -1.4 3,249,517 + MPMX20_03097 0.42 +0.6 3,249,547 - MPMX20_03097 0.45 -0.0 3,249,610 - MPMX20_03097 0.51 +1.0 3,249,660 - MPMX20_03097 0.57 -0.3 3,249,699 + MPMX20_03097 0.61 +0.2 3,249,700 + MPMX20_03097 0.61 -0.3 3,249,700 + MPMX20_03097 0.61 -1.3 3,249,708 - MPMX20_03097 0.62 -1.3 3,249,708 - MPMX20_03097 0.62 +0.4 3,249,833 + MPMX20_03097 0.75 -0.7 3,249,899 + MPMX20_03097 0.82 +0.5 3,249,899 + MPMX20_03097 0.82 +0.1 3,249,907 - MPMX20_03097 0.83 +1.4 3,250,076 + +0.4 3,250,081 + +0.2 3,250,089 - +1.0 3,250,089 - -0.3 3,250,089 - +1.1 3,250,141 - -1.2 3,250,167 + -1.2 3,250,179 + -1.1 3,250,179 + +2.8 3,250,213 - MPMX20_03098 0.13 -1.4 3,250,213 - MPMX20_03098 0.13 +0.2 3,250,232 - MPMX20_03098 0.14 -2.7 3,250,249 - MPMX20_03098 0.16 -1.3 3,250,279 - MPMX20_03098 0.18 -2.3 3,250,349 - MPMX20_03098 0.25 -0.0 3,250,349 - MPMX20_03098 0.25 -0.2 3,250,370 + MPMX20_03098 0.26 -0.3 3,250,560 + MPMX20_03098 0.43 -1.4 3,250,595 - MPMX20_03098 0.46 -0.9 3,250,601 - MPMX20_03098 0.46 -0.7 3,250,607 + MPMX20_03098 0.47 -0.1 3,250,639 - MPMX20_03098 0.50 -0.2 3,250,762 - MPMX20_03098 0.60 +0.2 3,250,767 - MPMX20_03098 0.61 -1.8 3,250,767 - MPMX20_03098 0.61 -0.6 3,250,767 - MPMX20_03098 0.61 +0.2 3,250,770 - MPMX20_03098 0.61 -0.6 3,250,869 - MPMX20_03098 0.69 +2.9 3,250,871 + MPMX20_03098 0.70 -1.2 3,250,874 - MPMX20_03098 0.70 -1.8 3,250,879 - MPMX20_03098 0.70 -0.4 3,250,879 - MPMX20_03098 0.70 -0.4 3,250,906 + MPMX20_03098 0.73 +0.8 3,250,906 - MPMX20_03098 0.73 +1.2 3,250,932 + MPMX20_03098 0.75 -1.5 3,250,932 + MPMX20_03098 0.75 -1.4 3,250,940 - MPMX20_03098 0.76 -1.5 3,250,960 + MPMX20_03098 0.77 -0.4 3,250,977 + MPMX20_03098 0.79 -0.7 3,250,995 - MPMX20_03098 0.80 -2.1 3,251,010 - MPMX20_03098 0.82 -1.7 3,251,094 + MPMX20_03098 0.89 +0.7 3,251,094 - MPMX20_03098 0.89 +1.2 3,251,224 + -1.7 3,251,227 - -1.2 3,251,356 + MPMX20_03099 0.13 +0.3 3,251,364 - MPMX20_03099 0.14 +2.2 3,251,364 - MPMX20_03099 0.14 -0.4 3,251,386 + MPMX20_03099 0.16 +1.4 3,251,411 - MPMX20_03099 0.19 -1.1 3,251,571 - MPMX20_03099 0.37 +0.2 3,251,723 + MPMX20_03099 0.53 -1.4 3,251,731 - MPMX20_03099 0.54 -2.4 3,251,736 - MPMX20_03099 0.55 -1.0 3,251,799 - MPMX20_03099 0.61 -0.2 3,251,954 + MPMX20_03099 0.78 -1.5 3,251,954 + MPMX20_03099 0.78 -0.3 3,251,960 - MPMX20_03099 0.79 +0.2 3,252,027 - MPMX20_03099 0.86 +0.2 3,252,085 - -0.8 3,252,085 - -0.1 3,252,109 + -0.1 3,252,111 + -2.5
Or see this region's nucleotide sequence