Experiment: TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01090 and MPMX20_01091 are separated by 58 nucleotides MPMX20_01091 and MPMX20_01092 are separated by 28 nucleotides MPMX20_01092 and MPMX20_01093 are separated by 24 nucleotides MPMX20_01093 and MPMX20_01094 overlap by 4 nucleotides
MPMX20_01090: MPMX20_01090 - Chaperedoxin, at 1,149,752 to 1,150,606
_01090
MPMX20_01091: MPMX20_01091 - hypothetical protein, at 1,150,665 to 1,151,435
_01091
MPMX20_01092: MPMX20_01092 - Thioesterase 1/protease 1/lysophospholipase L1, at 1,151,464 to 1,152,033
_01092
MPMX20_01093: MPMX20_01093 - Lipoprotein-releasing system ATP-binding protein LolD, at 1,152,058 to 1,152,744
_01093
MPMX20_01094: MPMX20_01094 - hypothetical protein, at 1,152,741 to 1,155,155
_01094
Position (kb)
1151
1152
1153 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1150.466 kb on + strand, within MPMX20_01090 at 1150.496 kb on + strand, within MPMX20_01090 at 1150.533 kb on + strand at 1150.539 kb on + strand at 1150.547 kb on - strand at 1150.547 kb on - strand at 1150.549 kb on + strand at 1150.549 kb on + strand at 1150.557 kb on - strand at 1150.557 kb on - strand at 1150.559 kb on + strand at 1150.604 kb on + strand at 1150.709 kb on + strand at 1150.739 kb on - strand at 1150.790 kb on + strand, within MPMX20_01091 at 1150.805 kb on + strand, within MPMX20_01091 at 1150.874 kb on - strand, within MPMX20_01091 at 1150.893 kb on + strand, within MPMX20_01091 at 1150.893 kb on + strand, within MPMX20_01091 at 1150.899 kb on + strand, within MPMX20_01091 at 1150.919 kb on + strand, within MPMX20_01091 at 1150.949 kb on - strand, within MPMX20_01091 at 1150.954 kb on - strand, within MPMX20_01091 at 1150.974 kb on - strand, within MPMX20_01091 at 1151.010 kb on + strand, within MPMX20_01091 at 1151.022 kb on + strand, within MPMX20_01091 at 1151.041 kb on - strand, within MPMX20_01091 at 1151.041 kb on - strand, within MPMX20_01091 at 1151.155 kb on - strand, within MPMX20_01091 at 1151.171 kb on - strand, within MPMX20_01091 at 1151.171 kb on - strand, within MPMX20_01091 at 1151.232 kb on - strand, within MPMX20_01091 at 1151.271 kb on + strand, within MPMX20_01091 at 1151.271 kb on + strand, within MPMX20_01091 at 1151.271 kb on + strand, within MPMX20_01091 at 1151.297 kb on + strand, within MPMX20_01091 at 1151.305 kb on - strand, within MPMX20_01091 at 1151.437 kb on + strand at 1151.444 kb on - strand at 1151.446 kb on + strand at 1151.446 kb on + strand at 1151.464 kb on - strand at 1151.563 kb on + strand, within MPMX20_01092 at 1151.571 kb on + strand, within MPMX20_01092 at 1151.631 kb on + strand, within MPMX20_01092 at 1151.631 kb on + strand, within MPMX20_01092 at 1151.631 kb on + strand, within MPMX20_01092 at 1151.631 kb on + strand, within MPMX20_01092 at 1151.639 kb on - strand, within MPMX20_01092 at 1151.639 kb on - strand, within MPMX20_01092 at 1151.639 kb on - strand, within MPMX20_01092 at 1151.678 kb on - strand, within MPMX20_01092 at 1151.745 kb on + strand, within MPMX20_01092 at 1151.752 kb on + strand, within MPMX20_01092 at 1151.760 kb on - strand, within MPMX20_01092 at 1151.760 kb on - strand, within MPMX20_01092 at 1151.780 kb on - strand, within MPMX20_01092 at 1151.834 kb on + strand, within MPMX20_01092 at 1151.863 kb on + strand, within MPMX20_01092 at 1151.871 kb on - strand, within MPMX20_01092 at 1151.909 kb on + strand, within MPMX20_01092 at 1151.917 kb on - strand, within MPMX20_01092 at 1151.937 kb on + strand, within MPMX20_01092 at 1151.937 kb on + strand, within MPMX20_01092 at 1151.937 kb on + strand, within MPMX20_01092 at 1151.937 kb on + strand, within MPMX20_01092 at 1151.940 kb on - strand, within MPMX20_01092 at 1151.950 kb on - strand, within MPMX20_01092 at 1151.950 kb on - strand, within MPMX20_01092 at 1151.997 kb on + strand at 1151.997 kb on + strand at 1152.106 kb on + strand at 1152.120 kb on - strand at 1152.141 kb on + strand, within MPMX20_01093 at 1152.189 kb on + strand, within MPMX20_01093 at 1152.253 kb on - strand, within MPMX20_01093 at 1152.253 kb on - strand, within MPMX20_01093 at 1152.294 kb on + strand, within MPMX20_01093 at 1152.405 kb on - strand, within MPMX20_01093 at 1152.426 kb on - strand, within MPMX20_01093 at 1152.441 kb on + strand, within MPMX20_01093 at 1152.456 kb on + strand, within MPMX20_01093 at 1152.456 kb on + strand, within MPMX20_01093 at 1152.498 kb on + strand, within MPMX20_01093 at 1152.516 kb on - strand, within MPMX20_01093 at 1152.516 kb on - strand, within MPMX20_01093 at 1152.523 kb on + strand, within MPMX20_01093 at 1152.523 kb on + strand, within MPMX20_01093 at 1152.523 kb on + strand, within MPMX20_01093 at 1152.523 kb on + strand, within MPMX20_01093 at 1152.523 kb on + strand, within MPMX20_01093 at 1152.525 kb on - strand, within MPMX20_01093 at 1152.531 kb on - strand, within MPMX20_01093 at 1152.531 kb on - strand, within MPMX20_01093 at 1152.531 kb on - strand, within MPMX20_01093 at 1152.531 kb on - strand, within MPMX20_01093 at 1152.553 kb on + strand, within MPMX20_01093 at 1152.561 kb on - strand, within MPMX20_01093 at 1152.643 kb on - strand, within MPMX20_01093 at 1152.643 kb on - strand, within MPMX20_01093 at 1152.655 kb on - strand, within MPMX20_01093 at 1152.735 kb on - strand at 1152.783 kb on - strand at 1152.844 kb on - strand at 1152.849 kb on - strand at 1152.872 kb on - strand at 1152.873 kb on - strand at 1152.997 kb on + strand, within MPMX20_01094
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,150,466 + MPMX20_01090 0.84 +0.1 1,150,496 + MPMX20_01090 0.87 -0.4 1,150,533 + -0.4 1,150,539 + -1.2 1,150,547 - -1.3 1,150,547 - +0.5 1,150,549 + +0.6 1,150,549 + -0.3 1,150,557 - -0.5 1,150,557 - -1.3 1,150,559 + +4.2 1,150,604 + +0.6 1,150,709 + +0.1 1,150,739 - -0.8 1,150,790 + MPMX20_01091 0.16 -0.5 1,150,805 + MPMX20_01091 0.18 -0.3 1,150,874 - MPMX20_01091 0.27 +2.1 1,150,893 + MPMX20_01091 0.30 +2.8 1,150,893 + MPMX20_01091 0.30 -0.8 1,150,899 + MPMX20_01091 0.30 +0.9 1,150,919 + MPMX20_01091 0.33 -0.7 1,150,949 - MPMX20_01091 0.37 +0.1 1,150,954 - MPMX20_01091 0.37 -1.1 1,150,974 - MPMX20_01091 0.40 +0.3 1,151,010 + MPMX20_01091 0.45 -1.9 1,151,022 + MPMX20_01091 0.46 -0.3 1,151,041 - MPMX20_01091 0.49 -1.0 1,151,041 - MPMX20_01091 0.49 +0.5 1,151,155 - MPMX20_01091 0.64 -0.1 1,151,171 - MPMX20_01091 0.66 -1.4 1,151,171 - MPMX20_01091 0.66 -0.4 1,151,232 - MPMX20_01091 0.74 +0.5 1,151,271 + MPMX20_01091 0.79 -1.1 1,151,271 + MPMX20_01091 0.79 +0.5 1,151,271 + MPMX20_01091 0.79 -0.0 1,151,297 + MPMX20_01091 0.82 -0.9 1,151,305 - MPMX20_01091 0.83 -1.2 1,151,437 + -0.1 1,151,444 - -0.2 1,151,446 + +1.2 1,151,446 + -1.8 1,151,464 - +0.5 1,151,563 + MPMX20_01092 0.17 -1.5 1,151,571 + MPMX20_01092 0.19 -1.3 1,151,631 + MPMX20_01092 0.29 -0.4 1,151,631 + MPMX20_01092 0.29 -1.3 1,151,631 + MPMX20_01092 0.29 +0.7 1,151,631 + MPMX20_01092 0.29 -0.9 1,151,639 - MPMX20_01092 0.31 +0.5 1,151,639 - MPMX20_01092 0.31 +0.5 1,151,639 - MPMX20_01092 0.31 -0.9 1,151,678 - MPMX20_01092 0.38 -1.9 1,151,745 + MPMX20_01092 0.49 -0.1 1,151,752 + MPMX20_01092 0.51 -0.2 1,151,760 - MPMX20_01092 0.52 -2.3 1,151,760 - MPMX20_01092 0.52 -0.6 1,151,780 - MPMX20_01092 0.55 +0.5 1,151,834 + MPMX20_01092 0.65 +0.7 1,151,863 + MPMX20_01092 0.70 -0.4 1,151,871 - MPMX20_01092 0.71 +0.5 1,151,909 + MPMX20_01092 0.78 -1.3 1,151,917 - MPMX20_01092 0.79 -0.9 1,151,937 + MPMX20_01092 0.83 -0.3 1,151,937 + MPMX20_01092 0.83 -1.2 1,151,937 + MPMX20_01092 0.83 -0.4 1,151,937 + MPMX20_01092 0.83 +0.2 1,151,940 - MPMX20_01092 0.84 +0.1 1,151,950 - MPMX20_01092 0.85 -1.6 1,151,950 - MPMX20_01092 0.85 -2.1 1,151,997 + -0.8 1,151,997 + +0.2 1,152,106 + +0.5 1,152,120 - -1.5 1,152,141 + MPMX20_01093 0.12 +2.1 1,152,189 + MPMX20_01093 0.19 -2.1 1,152,253 - MPMX20_01093 0.28 +1.8 1,152,253 - MPMX20_01093 0.28 -0.3 1,152,294 + MPMX20_01093 0.34 -1.0 1,152,405 - MPMX20_01093 0.51 -0.6 1,152,426 - MPMX20_01093 0.54 -0.3 1,152,441 + MPMX20_01093 0.56 +0.6 1,152,456 + MPMX20_01093 0.58 -1.0 1,152,456 + MPMX20_01093 0.58 -0.9 1,152,498 + MPMX20_01093 0.64 +2.6 1,152,516 - MPMX20_01093 0.67 +0.7 1,152,516 - MPMX20_01093 0.67 +0.2 1,152,523 + MPMX20_01093 0.68 +1.2 1,152,523 + MPMX20_01093 0.68 -0.8 1,152,523 + MPMX20_01093 0.68 -0.5 1,152,523 + MPMX20_01093 0.68 -0.6 1,152,523 + MPMX20_01093 0.68 +0.0 1,152,525 - MPMX20_01093 0.68 -0.8 1,152,531 - MPMX20_01093 0.69 +0.3 1,152,531 - MPMX20_01093 0.69 -0.7 1,152,531 - MPMX20_01093 0.69 -1.7 1,152,531 - MPMX20_01093 0.69 -1.8 1,152,553 + MPMX20_01093 0.72 -1.7 1,152,561 - MPMX20_01093 0.73 +0.2 1,152,643 - MPMX20_01093 0.85 -0.5 1,152,643 - MPMX20_01093 0.85 +0.5 1,152,655 - MPMX20_01093 0.87 -1.0 1,152,735 - +0.8 1,152,783 - -1.9 1,152,844 - -0.1 1,152,849 - +0.1 1,152,872 - -1.8 1,152,873 - -0.1 1,152,997 + MPMX20_01094 0.11 -0.9
Or see this region's nucleotide sequence