Experiment: M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03898 and MPMX20_03899 are separated by 10 nucleotides MPMX20_03899 and MPMX20_03900 are separated by 10 nucleotides MPMX20_03900 and MPMX20_03901 overlap by 8 nucleotides MPMX20_03901 and MPMX20_03902 are separated by 9 nucleotides MPMX20_03902 and MPMX20_03903 are separated by 9 nucleotides
MPMX20_03898: MPMX20_03898 - Urease accessory protein UreD, at 4,109,144 to 4,109,971
_03898
MPMX20_03899: MPMX20_03899 - Urease subunit gamma, at 4,109,982 to 4,110,284
_03899
MPMX20_03900: MPMX20_03900 - Urease subunit beta, at 4,110,295 to 4,110,609
_03900
MPMX20_03901: MPMX20_03901 - Urease subunit alpha, at 4,110,602 to 4,112,305
_03901
MPMX20_03902: MPMX20_03902 - Urease accessory protein UreE, at 4,112,315 to 4,112,779
_03902
MPMX20_03903: MPMX20_03903 - hypothetical protein, at 4,112,789 to 4,113,328
_03903
Position (kb)
4110
4111
4112
4113 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4109.618 kb on + strand, within MPMX20_03898 at 4109.644 kb on - strand, within MPMX20_03898 at 4109.664 kb on + strand, within MPMX20_03898 at 4109.670 kb on + strand, within MPMX20_03898 at 4109.670 kb on + strand, within MPMX20_03898 at 4109.749 kb on + strand, within MPMX20_03898 at 4109.776 kb on + strand, within MPMX20_03898 at 4109.784 kb on - strand, within MPMX20_03898 at 4109.784 kb on - strand, within MPMX20_03898 at 4109.823 kb on + strand, within MPMX20_03898 at 4109.932 kb on + strand at 4109.975 kb on - strand at 4110.025 kb on + strand, within MPMX20_03899 at 4110.028 kb on - strand, within MPMX20_03899 at 4110.069 kb on - strand, within MPMX20_03899 at 4110.090 kb on + strand, within MPMX20_03899 at 4110.090 kb on + strand, within MPMX20_03899 at 4110.098 kb on - strand, within MPMX20_03899 at 4110.224 kb on + strand, within MPMX20_03899 at 4110.232 kb on - strand, within MPMX20_03899 at 4110.247 kb on + strand, within MPMX20_03899 at 4110.247 kb on + strand, within MPMX20_03899 at 4110.255 kb on - strand at 4110.255 kb on - strand at 4110.255 kb on - strand at 4110.278 kb on + strand at 4110.278 kb on + strand at 4110.278 kb on + strand at 4110.286 kb on - strand at 4110.286 kb on - strand at 4110.286 kb on - strand at 4110.286 kb on - strand at 4110.288 kb on - strand at 4110.346 kb on + strand, within MPMX20_03900 at 4110.407 kb on - strand, within MPMX20_03900 at 4110.411 kb on - strand, within MPMX20_03900 at 4110.426 kb on + strand, within MPMX20_03900 at 4110.426 kb on + strand, within MPMX20_03900 at 4110.434 kb on - strand, within MPMX20_03900 at 4110.434 kb on - strand, within MPMX20_03900 at 4110.538 kb on + strand, within MPMX20_03900 at 4110.543 kb on + strand, within MPMX20_03900 at 4110.594 kb on + strand at 4110.627 kb on + strand at 4110.645 kb on - strand at 4110.675 kb on + strand at 4110.735 kb on - strand at 4110.735 kb on - strand at 4110.762 kb on + strand at 4110.770 kb on - strand at 4110.806 kb on + strand, within MPMX20_03901 at 4110.814 kb on - strand, within MPMX20_03901 at 4110.823 kb on + strand, within MPMX20_03901 at 4110.879 kb on + strand, within MPMX20_03901 at 4110.889 kb on + strand, within MPMX20_03901 at 4110.889 kb on + strand, within MPMX20_03901 at 4110.950 kb on + strand, within MPMX20_03901 at 4111.107 kb on + strand, within MPMX20_03901 at 4111.178 kb on - strand, within MPMX20_03901 at 4111.190 kb on + strand, within MPMX20_03901 at 4111.192 kb on - strand, within MPMX20_03901 at 4111.197 kb on + strand, within MPMX20_03901 at 4111.212 kb on - strand, within MPMX20_03901 at 4111.212 kb on - strand, within MPMX20_03901 at 4111.214 kb on - strand, within MPMX20_03901 at 4111.247 kb on - strand, within MPMX20_03901 at 4111.264 kb on + strand, within MPMX20_03901 at 4111.283 kb on + strand, within MPMX20_03901 at 4111.283 kb on + strand, within MPMX20_03901 at 4111.283 kb on + strand, within MPMX20_03901 at 4111.291 kb on - strand, within MPMX20_03901 at 4111.331 kb on + strand, within MPMX20_03901 at 4111.331 kb on + strand, within MPMX20_03901 at 4111.341 kb on + strand, within MPMX20_03901 at 4111.411 kb on - strand, within MPMX20_03901 at 4111.419 kb on + strand, within MPMX20_03901 at 4111.460 kb on - strand, within MPMX20_03901 at 4111.488 kb on + strand, within MPMX20_03901 at 4111.494 kb on - strand, within MPMX20_03901 at 4111.495 kb on - strand, within MPMX20_03901 at 4111.505 kb on - strand, within MPMX20_03901 at 4111.505 kb on - strand, within MPMX20_03901 at 4111.507 kb on + strand, within MPMX20_03901 at 4111.507 kb on + strand, within MPMX20_03901 at 4111.507 kb on + strand, within MPMX20_03901 at 4111.515 kb on - strand, within MPMX20_03901 at 4111.515 kb on - strand, within MPMX20_03901 at 4111.748 kb on - strand, within MPMX20_03901 at 4111.761 kb on - strand, within MPMX20_03901 at 4111.777 kb on - strand, within MPMX20_03901 at 4111.835 kb on + strand, within MPMX20_03901 at 4111.835 kb on + strand, within MPMX20_03901 at 4111.835 kb on + strand, within MPMX20_03901 at 4111.843 kb on - strand, within MPMX20_03901 at 4111.843 kb on - strand, within MPMX20_03901 at 4111.909 kb on - strand, within MPMX20_03901 at 4112.112 kb on + strand, within MPMX20_03901 at 4112.146 kb on + strand at 4112.177 kb on + strand at 4112.189 kb on + strand at 4112.189 kb on - strand at 4112.228 kb on - strand at 4112.307 kb on - strand at 4112.322 kb on + strand at 4112.334 kb on + strand at 4112.342 kb on - strand at 4112.356 kb on - strand at 4112.637 kb on + strand, within MPMX20_03902 at 4112.702 kb on - strand, within MPMX20_03902 at 4112.734 kb on - strand at 4112.748 kb on + strand at 4112.766 kb on - strand at 4112.855 kb on + strand, within MPMX20_03903 at 4112.947 kb on + strand, within MPMX20_03903 at 4112.993 kb on - strand, within MPMX20_03903 at 4113.106 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.153 kb on + strand, within MPMX20_03903 at 4113.155 kb on + strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.161 kb on - strand, within MPMX20_03903 at 4113.175 kb on - strand, within MPMX20_03903 at 4113.213 kb on + strand, within MPMX20_03903 at 4113.221 kb on - strand, within MPMX20_03903 at 4113.221 kb on - strand, within MPMX20_03903 at 4113.288 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,109,618 + MPMX20_03898 0.57 -1.9 4,109,644 - MPMX20_03898 0.60 -0.4 4,109,664 + MPMX20_03898 0.63 -1.8 4,109,670 + MPMX20_03898 0.64 +0.7 4,109,670 + MPMX20_03898 0.64 -0.8 4,109,749 + MPMX20_03898 0.73 +1.7 4,109,776 + MPMX20_03898 0.76 +0.4 4,109,784 - MPMX20_03898 0.77 +1.0 4,109,784 - MPMX20_03898 0.77 +0.0 4,109,823 + MPMX20_03898 0.82 -0.5 4,109,932 + +1.5 4,109,975 - -0.4 4,110,025 + MPMX20_03899 0.14 +1.7 4,110,028 - MPMX20_03899 0.15 -0.7 4,110,069 - MPMX20_03899 0.29 +0.5 4,110,090 + MPMX20_03899 0.36 -0.1 4,110,090 + MPMX20_03899 0.36 +0.3 4,110,098 - MPMX20_03899 0.38 +1.9 4,110,224 + MPMX20_03899 0.80 -0.6 4,110,232 - MPMX20_03899 0.83 +1.0 4,110,247 + MPMX20_03899 0.87 +3.9 4,110,247 + MPMX20_03899 0.87 -0.6 4,110,255 - -0.8 4,110,255 - -0.7 4,110,255 - -0.6 4,110,278 + -1.1 4,110,278 + -1.6 4,110,278 + +0.2 4,110,286 - +0.4 4,110,286 - -0.0 4,110,286 - +0.7 4,110,286 - +1.6 4,110,288 - -0.7 4,110,346 + MPMX20_03900 0.16 -2.6 4,110,407 - MPMX20_03900 0.36 -0.6 4,110,411 - MPMX20_03900 0.37 -0.7 4,110,426 + MPMX20_03900 0.42 -1.1 4,110,426 + MPMX20_03900 0.42 -1.5 4,110,434 - MPMX20_03900 0.44 -0.2 4,110,434 - MPMX20_03900 0.44 +0.2 4,110,538 + MPMX20_03900 0.77 -1.8 4,110,543 + MPMX20_03900 0.79 +0.0 4,110,594 + -0.0 4,110,627 + -0.0 4,110,645 - +0.7 4,110,675 + -0.7 4,110,735 - +0.8 4,110,735 - +1.3 4,110,762 + +0.7 4,110,770 - +0.2 4,110,806 + MPMX20_03901 0.12 +1.3 4,110,814 - MPMX20_03901 0.12 -0.2 4,110,823 + MPMX20_03901 0.13 -0.8 4,110,879 + MPMX20_03901 0.16 +0.4 4,110,889 + MPMX20_03901 0.17 -2.1 4,110,889 + MPMX20_03901 0.17 +2.9 4,110,950 + MPMX20_03901 0.20 +0.2 4,111,107 + MPMX20_03901 0.30 +2.3 4,111,178 - MPMX20_03901 0.34 +1.7 4,111,190 + MPMX20_03901 0.35 -1.4 4,111,192 - MPMX20_03901 0.35 +1.3 4,111,197 + MPMX20_03901 0.35 -2.9 4,111,212 - MPMX20_03901 0.36 +0.8 4,111,212 - MPMX20_03901 0.36 +0.7 4,111,214 - MPMX20_03901 0.36 -0.1 4,111,247 - MPMX20_03901 0.38 +0.7 4,111,264 + MPMX20_03901 0.39 -0.2 4,111,283 + MPMX20_03901 0.40 -1.8 4,111,283 + MPMX20_03901 0.40 +0.2 4,111,283 + MPMX20_03901 0.40 +0.5 4,111,291 - MPMX20_03901 0.40 -0.5 4,111,331 + MPMX20_03901 0.43 -1.7 4,111,331 + MPMX20_03901 0.43 +0.1 4,111,341 + MPMX20_03901 0.43 -0.8 4,111,411 - MPMX20_03901 0.47 +0.9 4,111,419 + MPMX20_03901 0.48 -1.7 4,111,460 - MPMX20_03901 0.50 +1.9 4,111,488 + MPMX20_03901 0.52 -1.0 4,111,494 - MPMX20_03901 0.52 -1.6 4,111,495 - MPMX20_03901 0.52 +0.2 4,111,505 - MPMX20_03901 0.53 -0.7 4,111,505 - MPMX20_03901 0.53 +1.9 4,111,507 + MPMX20_03901 0.53 -1.0 4,111,507 + MPMX20_03901 0.53 -2.2 4,111,507 + MPMX20_03901 0.53 -0.5 4,111,515 - MPMX20_03901 0.54 +1.8 4,111,515 - MPMX20_03901 0.54 -1.0 4,111,748 - MPMX20_03901 0.67 -1.6 4,111,761 - MPMX20_03901 0.68 +0.7 4,111,777 - MPMX20_03901 0.69 +0.7 4,111,835 + MPMX20_03901 0.72 +0.3 4,111,835 + MPMX20_03901 0.72 -1.8 4,111,835 + MPMX20_03901 0.72 -0.8 4,111,843 - MPMX20_03901 0.73 +1.3 4,111,843 - MPMX20_03901 0.73 +0.0 4,111,909 - MPMX20_03901 0.77 -0.7 4,112,112 + MPMX20_03901 0.89 -0.4 4,112,146 + -0.3 4,112,177 + +0.3 4,112,189 + +0.4 4,112,189 - +1.2 4,112,228 - +0.0 4,112,307 - -0.0 4,112,322 + +3.3 4,112,334 + -0.8 4,112,342 - +1.1 4,112,356 - -0.9 4,112,637 + MPMX20_03902 0.69 -0.0 4,112,702 - MPMX20_03902 0.83 +0.9 4,112,734 - +3.3 4,112,748 + +0.3 4,112,766 - +0.0 4,112,855 + MPMX20_03903 0.12 +0.4 4,112,947 + MPMX20_03903 0.29 -1.4 4,112,993 - MPMX20_03903 0.38 -0.0 4,113,106 + MPMX20_03903 0.59 -0.1 4,113,153 + MPMX20_03903 0.67 +0.3 4,113,153 + MPMX20_03903 0.67 +0.8 4,113,153 + MPMX20_03903 0.67 -1.3 4,113,153 + MPMX20_03903 0.67 +0.5 4,113,153 + MPMX20_03903 0.67 -1.4 4,113,153 + MPMX20_03903 0.67 -1.9 4,113,153 + MPMX20_03903 0.67 -1.2 4,113,153 + MPMX20_03903 0.67 +0.7 4,113,153 + MPMX20_03903 0.67 +0.1 4,113,153 + MPMX20_03903 0.67 +1.3 4,113,155 + MPMX20_03903 0.68 +2.3 4,113,161 - MPMX20_03903 0.69 -1.0 4,113,161 - MPMX20_03903 0.69 +1.3 4,113,161 - MPMX20_03903 0.69 -0.2 4,113,161 - MPMX20_03903 0.69 -0.5 4,113,161 - MPMX20_03903 0.69 +1.3 4,113,175 - MPMX20_03903 0.71 -0.6 4,113,213 + MPMX20_03903 0.79 +0.1 4,113,221 - MPMX20_03903 0.80 +1.8 4,113,221 - MPMX20_03903 0.80 -0.4 4,113,288 - +0.3
Or see this region's nucleotide sequence