Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03870

Experiment: M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03869 and MPMX20_03870 are separated by 166 nucleotidesMPMX20_03870 and MPMX20_03871 are separated by 5 nucleotidesMPMX20_03871 and MPMX20_03872 overlap by 4 nucleotides MPMX20_03869: MPMX20_03869 - hypothetical protein, at 4,076,102 to 4,077,916 _03869 MPMX20_03870: MPMX20_03870 - HTH-type transcriptional activator RhaS, at 4,078,083 to 4,078,922 _03870 MPMX20_03871: MPMX20_03871 - hypothetical protein, at 4,078,928 to 4,079,815 _03871 MPMX20_03872: MPMX20_03872 - Iron(3+)-hydroxamate-binding protein FhuD, at 4,079,812 to 4,080,765 _03872 Position (kb) 4078 4079Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 4077.101 kb on - strand, within MPMX20_03869at 4077.119 kb on - strand, within MPMX20_03869at 4077.134 kb on + strand, within MPMX20_03869at 4077.139 kb on + strand, within MPMX20_03869at 4077.142 kb on - strand, within MPMX20_03869at 4077.142 kb on - strand, within MPMX20_03869at 4077.142 kb on - strand, within MPMX20_03869at 4077.181 kb on - strand, within MPMX20_03869at 4077.240 kb on - strand, within MPMX20_03869at 4077.242 kb on + strand, within MPMX20_03869at 4077.244 kb on + strand, within MPMX20_03869at 4077.254 kb on + strand, within MPMX20_03869at 4077.254 kb on + strand, within MPMX20_03869at 4077.254 kb on + strand, within MPMX20_03869at 4077.254 kb on + strand, within MPMX20_03869at 4077.264 kb on + strand, within MPMX20_03869at 4077.264 kb on + strand, within MPMX20_03869at 4077.264 kb on + strand, within MPMX20_03869at 4077.272 kb on - strand, within MPMX20_03869at 4077.272 kb on - strand, within MPMX20_03869at 4077.272 kb on - strand, within MPMX20_03869at 4077.300 kb on + strand, within MPMX20_03869at 4077.302 kb on + strand, within MPMX20_03869at 4077.352 kb on + strand, within MPMX20_03869at 4077.360 kb on - strand, within MPMX20_03869at 4077.361 kb on - strand, within MPMX20_03869at 4077.391 kb on - strand, within MPMX20_03869at 4077.397 kb on + strand, within MPMX20_03869at 4077.418 kb on + strand, within MPMX20_03869at 4077.517 kb on - strand, within MPMX20_03869at 4077.544 kb on + strand, within MPMX20_03869at 4077.552 kb on - strand, within MPMX20_03869at 4077.565 kb on + strand, within MPMX20_03869at 4077.573 kb on - strand, within MPMX20_03869at 4077.638 kb on + strand, within MPMX20_03869at 4077.643 kb on + strand, within MPMX20_03869at 4077.646 kb on - strand, within MPMX20_03869at 4077.743 kb on - strandat 4077.744 kb on + strandat 4077.744 kb on + strandat 4077.744 kb on + strandat 4077.752 kb on - strandat 4077.752 kb on - strandat 4077.776 kb on - strandat 4077.807 kb on - strandat 4077.830 kb on - strandat 4077.844 kb on - strandat 4077.866 kb on + strandat 4077.879 kb on - strandat 4077.973 kb on - strandat 4078.081 kb on - strandat 4078.131 kb on - strandat 4078.182 kb on - strand, within MPMX20_03870at 4078.188 kb on + strand, within MPMX20_03870at 4078.257 kb on + strand, within MPMX20_03870at 4078.291 kb on + strand, within MPMX20_03870at 4078.299 kb on - strand, within MPMX20_03870at 4078.301 kb on + strand, within MPMX20_03870at 4078.301 kb on + strand, within MPMX20_03870at 4078.301 kb on + strand, within MPMX20_03870at 4078.308 kb on - strand, within MPMX20_03870at 4078.309 kb on - strand, within MPMX20_03870at 4078.319 kb on + strand, within MPMX20_03870at 4078.335 kb on + strand, within MPMX20_03870at 4078.416 kb on + strand, within MPMX20_03870at 4078.453 kb on - strand, within MPMX20_03870at 4078.466 kb on - strand, within MPMX20_03870at 4078.466 kb on - strand, within MPMX20_03870at 4078.512 kb on + strand, within MPMX20_03870at 4078.584 kb on + strand, within MPMX20_03870at 4078.584 kb on + strand, within MPMX20_03870at 4078.605 kb on - strand, within MPMX20_03870at 4078.605 kb on - strand, within MPMX20_03870at 4078.635 kb on - strand, within MPMX20_03870at 4078.672 kb on + strand, within MPMX20_03870at 4078.672 kb on + strand, within MPMX20_03870at 4078.704 kb on - strand, within MPMX20_03870at 4078.736 kb on + strand, within MPMX20_03870at 4078.736 kb on + strand, within MPMX20_03870at 4078.756 kb on + strand, within MPMX20_03870at 4078.756 kb on + strand, within MPMX20_03870at 4078.764 kb on - strand, within MPMX20_03870at 4078.924 kb on + strandat 4078.929 kb on + strandat 4078.932 kb on - strandat 4078.945 kb on - strandat 4078.948 kb on + strandat 4078.948 kb on + strandat 4078.948 kb on + strandat 4078.987 kb on + strandat 4078.987 kb on + strandat 4079.016 kb on - strandat 4079.035 kb on + strand, within MPMX20_03871at 4079.045 kb on + strand, within MPMX20_03871at 4079.045 kb on + strand, within MPMX20_03871at 4079.053 kb on - strand, within MPMX20_03871at 4079.053 kb on - strand, within MPMX20_03871at 4079.053 kb on - strand, within MPMX20_03871at 4079.053 kb on - strand, within MPMX20_03871at 4079.053 kb on - strand, within MPMX20_03871at 4079.053 kb on - strand, within MPMX20_03871at 4079.063 kb on - strand, within MPMX20_03871at 4079.095 kb on + strand, within MPMX20_03871at 4079.145 kb on - strand, within MPMX20_03871at 4079.181 kb on + strand, within MPMX20_03871at 4079.229 kb on + strand, within MPMX20_03871at 4079.260 kb on - strand, within MPMX20_03871at 4079.260 kb on - strand, within MPMX20_03871at 4079.267 kb on - strand, within MPMX20_03871at 4079.274 kb on + strand, within MPMX20_03871at 4079.291 kb on - strand, within MPMX20_03871at 4079.330 kb on - strand, within MPMX20_03871at 4079.332 kb on + strand, within MPMX20_03871at 4079.340 kb on - strand, within MPMX20_03871at 4079.340 kb on - strand, within MPMX20_03871at 4079.462 kb on + strand, within MPMX20_03871at 4079.506 kb on + strand, within MPMX20_03871at 4079.506 kb on + strand, within MPMX20_03871at 4079.520 kb on + strand, within MPMX20_03871at 4079.575 kb on + strand, within MPMX20_03871at 4079.587 kb on + strand, within MPMX20_03871at 4079.587 kb on + strand, within MPMX20_03871at 4079.620 kb on + strand, within MPMX20_03871at 4079.635 kb on + strand, within MPMX20_03871at 4079.636 kb on - strand, within MPMX20_03871at 4079.727 kb on + strandat 4079.735 kb on - strandat 4079.786 kb on - strandat 4079.822 kb on + strandat 4079.864 kb on - strandat 4079.874 kb on + strandat 4079.882 kb on - strandat 4079.882 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
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4,077,101 - MPMX20_03869 0.55 +0.6
4,077,119 - MPMX20_03869 0.56 +0.3
4,077,134 + MPMX20_03869 0.57 -2.2
4,077,139 + MPMX20_03869 0.57 -0.4
4,077,142 - MPMX20_03869 0.57 +0.7
4,077,142 - MPMX20_03869 0.57 -1.2
4,077,142 - MPMX20_03869 0.57 +0.3
4,077,181 - MPMX20_03869 0.59 -0.5
4,077,240 - MPMX20_03869 0.63 -1.0
4,077,242 + MPMX20_03869 0.63 +1.4
4,077,244 + MPMX20_03869 0.63 +0.1
4,077,254 + MPMX20_03869 0.63 -0.4
4,077,254 + MPMX20_03869 0.63 -0.7
4,077,254 + MPMX20_03869 0.63 +0.7
4,077,254 + MPMX20_03869 0.63 -1.3
4,077,264 + MPMX20_03869 0.64 -0.7
4,077,264 + MPMX20_03869 0.64 +1.3
4,077,264 + MPMX20_03869 0.64 +3.9
4,077,272 - MPMX20_03869 0.64 -1.4
4,077,272 - MPMX20_03869 0.64 +1.0
4,077,272 - MPMX20_03869 0.64 -0.7
4,077,300 + MPMX20_03869 0.66 -2.0
4,077,302 + MPMX20_03869 0.66 -0.5
4,077,352 + MPMX20_03869 0.69 -1.3
4,077,360 - MPMX20_03869 0.69 -0.0
4,077,361 - MPMX20_03869 0.69 +0.1
4,077,391 - MPMX20_03869 0.71 +0.2
4,077,397 + MPMX20_03869 0.71 -0.9
4,077,418 + MPMX20_03869 0.73 -0.0
4,077,517 - MPMX20_03869 0.78 -1.6
4,077,544 + MPMX20_03869 0.79 -0.3
4,077,552 - MPMX20_03869 0.80 +0.5
4,077,565 + MPMX20_03869 0.81 -0.4
4,077,573 - MPMX20_03869 0.81 +0.3
4,077,638 + MPMX20_03869 0.85 +0.7
4,077,643 + MPMX20_03869 0.85 -0.6
4,077,646 - MPMX20_03869 0.85 -0.3
4,077,743 - -0.5
4,077,744 + -1.4
4,077,744 + +0.7
4,077,744 + -1.2
4,077,752 - +0.7
4,077,752 - +2.6
4,077,776 - -1.9
4,077,807 - -0.1
4,077,830 - +0.4
4,077,844 - -0.0
4,077,866 + -1.3
4,077,879 - +0.1
4,077,973 - +0.4
4,078,081 - -0.8
4,078,131 - +1.0
4,078,182 - MPMX20_03870 0.12 -1.2
4,078,188 + MPMX20_03870 0.12 -1.9
4,078,257 + MPMX20_03870 0.21 -0.3
4,078,291 + MPMX20_03870 0.25 -0.1
4,078,299 - MPMX20_03870 0.26 -2.4
4,078,301 + MPMX20_03870 0.26 -1.1
4,078,301 + MPMX20_03870 0.26 +5.9
4,078,301 + MPMX20_03870 0.26 -1.0
4,078,308 - MPMX20_03870 0.27 +0.7
4,078,309 - MPMX20_03870 0.27 +1.1
4,078,319 + MPMX20_03870 0.28 -3.5
4,078,335 + MPMX20_03870 0.30 +0.1
4,078,416 + MPMX20_03870 0.40 -1.8
4,078,453 - MPMX20_03870 0.44 -0.3
4,078,466 - MPMX20_03870 0.46 -1.6
4,078,466 - MPMX20_03870 0.46 -2.6
4,078,512 + MPMX20_03870 0.51 +0.1
4,078,584 + MPMX20_03870 0.60 +0.8
4,078,584 + MPMX20_03870 0.60 -0.5
4,078,605 - MPMX20_03870 0.62 -1.5
4,078,605 - MPMX20_03870 0.62 +0.7
4,078,635 - MPMX20_03870 0.66 -1.0
4,078,672 + MPMX20_03870 0.70 +0.8
4,078,672 + MPMX20_03870 0.70 +0.1
4,078,704 - MPMX20_03870 0.74 -1.5
4,078,736 + MPMX20_03870 0.78 -1.7
4,078,736 + MPMX20_03870 0.78 -0.2
4,078,756 + MPMX20_03870 0.80 -0.3
4,078,756 + MPMX20_03870 0.80 +0.3
4,078,764 - MPMX20_03870 0.81 +1.6
4,078,924 + -0.3
4,078,929 + +2.6
4,078,932 - +0.4
4,078,945 - +0.1
4,078,948 + +2.3
4,078,948 + +0.5
4,078,948 + +0.0
4,078,987 + -1.6
4,078,987 + -0.6
4,079,016 - -1.2
4,079,035 + MPMX20_03871 0.12 -0.7
4,079,045 + MPMX20_03871 0.13 -1.8
4,079,045 + MPMX20_03871 0.13 +3.3
4,079,053 - MPMX20_03871 0.14 +0.2
4,079,053 - MPMX20_03871 0.14 +0.3
4,079,053 - MPMX20_03871 0.14 -1.0
4,079,053 - MPMX20_03871 0.14 -0.5
4,079,053 - MPMX20_03871 0.14 -0.0
4,079,053 - MPMX20_03871 0.14 -1.9
4,079,063 - MPMX20_03871 0.15 +0.9
4,079,095 + MPMX20_03871 0.19 -0.3
4,079,145 - MPMX20_03871 0.24 -0.4
4,079,181 + MPMX20_03871 0.28 +0.4
4,079,229 + MPMX20_03871 0.34 +1.8
4,079,260 - MPMX20_03871 0.37 -1.2
4,079,260 - MPMX20_03871 0.37 -1.8
4,079,267 - MPMX20_03871 0.38 -1.2
4,079,274 + MPMX20_03871 0.39 +0.6
4,079,291 - MPMX20_03871 0.41 +3.5
4,079,330 - MPMX20_03871 0.45 -1.7
4,079,332 + MPMX20_03871 0.45 -1.6
4,079,340 - MPMX20_03871 0.46 -0.5
4,079,340 - MPMX20_03871 0.46 +0.1
4,079,462 + MPMX20_03871 0.60 +0.3
4,079,506 + MPMX20_03871 0.65 +2.7
4,079,506 + MPMX20_03871 0.65 -0.6
4,079,520 + MPMX20_03871 0.67 +1.3
4,079,575 + MPMX20_03871 0.73 +1.0
4,079,587 + MPMX20_03871 0.74 -1.0
4,079,587 + MPMX20_03871 0.74 -2.0
4,079,620 + MPMX20_03871 0.78 -0.1
4,079,635 + MPMX20_03871 0.80 -0.0
4,079,636 - MPMX20_03871 0.80 -1.6
4,079,727 + -1.3
4,079,735 - +1.7
4,079,786 - -0.3
4,079,822 + +0.7
4,079,864 - -1.7
4,079,874 + -0.6
4,079,882 - +2.3
4,079,882 - -0.2

Or see this region's nucleotide sequence