Experiment: M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03821 and MPMX20_03822 are separated by 18 nucleotides MPMX20_03822 and MPMX20_03823 overlap by 23 nucleotides MPMX20_03823 and MPMX20_03824 are separated by 2 nucleotides
MPMX20_03821: MPMX20_03821 - Nucleoside permease NupG, at 4,022,994 to 4,024,250
_03821
MPMX20_03822: MPMX20_03822 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 4,024,269 to 4,025,078
_03822
MPMX20_03823: MPMX20_03823 - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 4,025,056 to 4,025,595
_03823
MPMX20_03824: MPMX20_03824 - Citrate lyase alpha chain, at 4,025,598 to 4,027,115
_03824
Position (kb)
4024
4025
4026 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 4023.278 kb on + strand, within MPMX20_03821 at 4023.319 kb on + strand, within MPMX20_03821 at 4023.319 kb on + strand, within MPMX20_03821 at 4023.327 kb on - strand, within MPMX20_03821 at 4023.329 kb on + strand, within MPMX20_03821 at 4023.329 kb on + strand, within MPMX20_03821 at 4023.329 kb on + strand, within MPMX20_03821 at 4023.337 kb on - strand, within MPMX20_03821 at 4023.438 kb on + strand, within MPMX20_03821 at 4023.438 kb on + strand, within MPMX20_03821 at 4023.466 kb on + strand, within MPMX20_03821 at 4023.476 kb on + strand, within MPMX20_03821 at 4023.487 kb on + strand, within MPMX20_03821 at 4023.495 kb on - strand, within MPMX20_03821 at 4023.495 kb on - strand, within MPMX20_03821 at 4023.527 kb on - strand, within MPMX20_03821 at 4023.603 kb on - strand, within MPMX20_03821 at 4023.603 kb on - strand, within MPMX20_03821 at 4023.663 kb on - strand, within MPMX20_03821 at 4023.696 kb on + strand, within MPMX20_03821 at 4023.833 kb on + strand, within MPMX20_03821 at 4023.851 kb on + strand, within MPMX20_03821 at 4024.026 kb on + strand, within MPMX20_03821 at 4024.031 kb on + strand, within MPMX20_03821 at 4024.063 kb on + strand, within MPMX20_03821 at 4024.068 kb on + strand, within MPMX20_03821 at 4024.071 kb on - strand, within MPMX20_03821 at 4024.085 kb on - strand, within MPMX20_03821 at 4024.103 kb on + strand, within MPMX20_03821 at 4024.103 kb on + strand, within MPMX20_03821 at 4024.170 kb on + strand at 4024.178 kb on - strand at 4024.196 kb on + strand at 4024.204 kb on - strand at 4024.204 kb on - strand at 4024.204 kb on - strand at 4024.265 kb on + strand at 4024.273 kb on - strand at 4024.339 kb on - strand at 4024.367 kb on + strand, within MPMX20_03822 at 4024.375 kb on - strand, within MPMX20_03822 at 4024.416 kb on + strand, within MPMX20_03822 at 4024.416 kb on + strand, within MPMX20_03822 at 4024.419 kb on - strand, within MPMX20_03822 at 4024.429 kb on - strand, within MPMX20_03822 at 4024.459 kb on + strand, within MPMX20_03822 at 4024.459 kb on + strand, within MPMX20_03822 at 4024.467 kb on + strand, within MPMX20_03822 at 4024.493 kb on + strand, within MPMX20_03822 at 4024.550 kb on - strand, within MPMX20_03822 at 4024.581 kb on + strand, within MPMX20_03822 at 4024.615 kb on + strand, within MPMX20_03822 at 4024.627 kb on + strand, within MPMX20_03822 at 4024.630 kb on - strand, within MPMX20_03822 at 4024.660 kb on - strand, within MPMX20_03822 at 4024.669 kb on + strand, within MPMX20_03822 at 4024.671 kb on - strand, within MPMX20_03822 at 4024.671 kb on - strand, within MPMX20_03822 at 4024.684 kb on + strand, within MPMX20_03822 at 4024.800 kb on - strand, within MPMX20_03822 at 4024.859 kb on - strand, within MPMX20_03822 at 4024.866 kb on + strand, within MPMX20_03822 at 4024.873 kb on - strand, within MPMX20_03822 at 4024.874 kb on - strand, within MPMX20_03822 at 4024.874 kb on - strand, within MPMX20_03822 at 4024.875 kb on - strand, within MPMX20_03822 at 4024.877 kb on + strand, within MPMX20_03822 at 4024.877 kb on + strand, within MPMX20_03822 at 4024.918 kb on - strand, within MPMX20_03822 at 4024.968 kb on - strand, within MPMX20_03822 at 4024.968 kb on - strand, within MPMX20_03822 at 4024.973 kb on - strand, within MPMX20_03822 at 4024.982 kb on - strand, within MPMX20_03822 at 4025.135 kb on + strand, within MPMX20_03823 at 4025.148 kb on - strand, within MPMX20_03823 at 4025.148 kb on - strand, within MPMX20_03823 at 4025.179 kb on - strand, within MPMX20_03823 at 4025.209 kb on + strand, within MPMX20_03823 at 4025.214 kb on + strand, within MPMX20_03823 at 4025.217 kb on - strand, within MPMX20_03823 at 4025.217 kb on - strand, within MPMX20_03823 at 4025.222 kb on - strand, within MPMX20_03823 at 4025.256 kb on + strand, within MPMX20_03823 at 4025.271 kb on + strand, within MPMX20_03823 at 4025.279 kb on - strand, within MPMX20_03823 at 4025.352 kb on + strand, within MPMX20_03823 at 4025.359 kb on + strand, within MPMX20_03823 at 4025.367 kb on - strand, within MPMX20_03823 at 4025.372 kb on - strand, within MPMX20_03823 at 4025.487 kb on + strand, within MPMX20_03823 at 4025.495 kb on - strand, within MPMX20_03823 at 4025.553 kb on + strand at 4025.567 kb on - strand at 4025.572 kb on - strand at 4025.603 kb on + strand at 4025.612 kb on + strand at 4025.612 kb on + strand at 4025.620 kb on - strand at 4025.620 kb on - strand at 4025.620 kb on - strand at 4025.670 kb on + strand at 4025.715 kb on + strand at 4025.832 kb on + strand, within MPMX20_03824 at 4025.832 kb on - strand, within MPMX20_03824 at 4025.834 kb on + strand, within MPMX20_03824 at 4025.884 kb on - strand, within MPMX20_03824 at 4025.899 kb on - strand, within MPMX20_03824 at 4026.044 kb on + strand, within MPMX20_03824 at 4026.061 kb on - strand, within MPMX20_03824
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,023,278 + MPMX20_03821 0.23 -0.3 4,023,319 + MPMX20_03821 0.26 +1.5 4,023,319 + MPMX20_03821 0.26 -0.3 4,023,327 - MPMX20_03821 0.26 -0.7 4,023,329 + MPMX20_03821 0.27 -0.7 4,023,329 + MPMX20_03821 0.27 +0.9 4,023,329 + MPMX20_03821 0.27 -0.6 4,023,337 - MPMX20_03821 0.27 -1.5 4,023,438 + MPMX20_03821 0.35 +0.4 4,023,438 + MPMX20_03821 0.35 +0.7 4,023,466 + MPMX20_03821 0.38 +0.2 4,023,476 + MPMX20_03821 0.38 -1.2 4,023,487 + MPMX20_03821 0.39 -1.7 4,023,495 - MPMX20_03821 0.40 -0.5 4,023,495 - MPMX20_03821 0.40 -0.2 4,023,527 - MPMX20_03821 0.42 +1.1 4,023,603 - MPMX20_03821 0.48 -0.5 4,023,603 - MPMX20_03821 0.48 -0.3 4,023,663 - MPMX20_03821 0.53 -0.8 4,023,696 + MPMX20_03821 0.56 -0.3 4,023,833 + MPMX20_03821 0.67 -1.5 4,023,851 + MPMX20_03821 0.68 +0.4 4,024,026 + MPMX20_03821 0.82 +0.7 4,024,031 + MPMX20_03821 0.82 +1.5 4,024,063 + MPMX20_03821 0.85 -0.7 4,024,068 + MPMX20_03821 0.85 -2.5 4,024,071 - MPMX20_03821 0.86 -0.1 4,024,085 - MPMX20_03821 0.87 +0.8 4,024,103 + MPMX20_03821 0.88 -0.2 4,024,103 + MPMX20_03821 0.88 +1.2 4,024,170 + -0.1 4,024,178 - -2.2 4,024,196 + +1.6 4,024,204 - -0.4 4,024,204 - +0.6 4,024,204 - +1.0 4,024,265 + +3.3 4,024,273 - -0.2 4,024,339 - +0.6 4,024,367 + MPMX20_03822 0.12 +0.4 4,024,375 - MPMX20_03822 0.13 +0.3 4,024,416 + MPMX20_03822 0.18 +1.3 4,024,416 + MPMX20_03822 0.18 -0.2 4,024,419 - MPMX20_03822 0.19 -1.4 4,024,429 - MPMX20_03822 0.20 -1.1 4,024,459 + MPMX20_03822 0.23 -0.8 4,024,459 + MPMX20_03822 0.23 -1.1 4,024,467 + MPMX20_03822 0.24 +0.4 4,024,493 + MPMX20_03822 0.28 +0.0 4,024,550 - MPMX20_03822 0.35 +0.6 4,024,581 + MPMX20_03822 0.39 +0.2 4,024,615 + MPMX20_03822 0.43 -0.2 4,024,627 + MPMX20_03822 0.44 -0.0 4,024,630 - MPMX20_03822 0.45 +0.3 4,024,660 - MPMX20_03822 0.48 +1.0 4,024,669 + MPMX20_03822 0.49 +1.3 4,024,671 - MPMX20_03822 0.50 +0.7 4,024,671 - MPMX20_03822 0.50 -0.4 4,024,684 + MPMX20_03822 0.51 -0.8 4,024,800 - MPMX20_03822 0.66 -0.0 4,024,859 - MPMX20_03822 0.73 -1.0 4,024,866 + MPMX20_03822 0.74 -1.0 4,024,873 - MPMX20_03822 0.75 -0.8 4,024,874 - MPMX20_03822 0.75 +1.1 4,024,874 - MPMX20_03822 0.75 +0.6 4,024,875 - MPMX20_03822 0.75 +0.6 4,024,877 + MPMX20_03822 0.75 -3.4 4,024,877 + MPMX20_03822 0.75 +1.3 4,024,918 - MPMX20_03822 0.80 +1.0 4,024,968 - MPMX20_03822 0.86 +0.8 4,024,968 - MPMX20_03822 0.86 -0.8 4,024,973 - MPMX20_03822 0.87 -0.2 4,024,982 - MPMX20_03822 0.88 -0.4 4,025,135 + MPMX20_03823 0.15 +3.3 4,025,148 - MPMX20_03823 0.17 +6.4 4,025,148 - MPMX20_03823 0.17 -0.5 4,025,179 - MPMX20_03823 0.23 +1.6 4,025,209 + MPMX20_03823 0.28 -0.2 4,025,214 + MPMX20_03823 0.29 +0.5 4,025,217 - MPMX20_03823 0.30 -0.6 4,025,217 - MPMX20_03823 0.30 +0.5 4,025,222 - MPMX20_03823 0.31 +0.3 4,025,256 + MPMX20_03823 0.37 +0.2 4,025,271 + MPMX20_03823 0.40 +0.1 4,025,279 - MPMX20_03823 0.41 -0.4 4,025,352 + MPMX20_03823 0.55 +0.8 4,025,359 + MPMX20_03823 0.56 +0.4 4,025,367 - MPMX20_03823 0.58 -0.8 4,025,372 - MPMX20_03823 0.59 -0.3 4,025,487 + MPMX20_03823 0.80 -0.0 4,025,495 - MPMX20_03823 0.81 -1.7 4,025,553 + -0.8 4,025,567 - -0.7 4,025,572 - -0.5 4,025,603 + -2.0 4,025,612 + -1.3 4,025,612 + -0.3 4,025,620 - +1.7 4,025,620 - +0.4 4,025,620 - +3.0 4,025,670 + -1.0 4,025,715 + -0.5 4,025,832 + MPMX20_03824 0.15 -2.5 4,025,832 - MPMX20_03824 0.15 -1.5 4,025,834 + MPMX20_03824 0.16 -0.3 4,025,884 - MPMX20_03824 0.19 +0.4 4,025,899 - MPMX20_03824 0.20 +1.0 4,026,044 + MPMX20_03824 0.29 +0.3 4,026,061 - MPMX20_03824 0.31 -0.1
Or see this region's nucleotide sequence