Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_03616

Experiment: M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_03615 and MPMX20_03616 are separated by 63 nucleotidesMPMX20_03616 and MPMX20_03617 are separated by 66 nucleotidesMPMX20_03617 and MPMX20_03618 are separated by 174 nucleotidesMPMX20_03618 and MPMX20_03619 are separated by 113 nucleotides MPMX20_03615: MPMX20_03615 - Carbamoyl dehydratase HypE, at 3,804,105 to 3,805,115 _03615 MPMX20_03616: MPMX20_03616 - Formate hydrogenlyase transcriptional activator, at 3,805,179 to 3,807,251 _03616 MPMX20_03617: MPMX20_03617 - hypothetical protein, at 3,807,318 to 3,807,662 _03617 MPMX20_03618: MPMX20_03618 - Endoribonuclease SymE, at 3,807,837 to 3,808,067 _03618 MPMX20_03619: MPMX20_03619 - DNA mismatch repair protein MutS, at 3,808,181 to 3,810,742 _03619 Position (kb) 3805 3806 3807 3808Strain fitness (log2 ratio) -2 -1 0 1 2at 3804.191 kb on + strandat 3804.199 kb on - strandat 3804.353 kb on - strand, within MPMX20_03615at 3804.372 kb on + strand, within MPMX20_03615at 3804.380 kb on - strand, within MPMX20_03615at 3804.393 kb on + strand, within MPMX20_03615at 3804.394 kb on + strand, within MPMX20_03615at 3804.446 kb on - strand, within MPMX20_03615at 3804.520 kb on - strand, within MPMX20_03615at 3804.531 kb on + strand, within MPMX20_03615at 3804.559 kb on - strand, within MPMX20_03615at 3804.651 kb on + strand, within MPMX20_03615at 3804.669 kb on + strand, within MPMX20_03615at 3804.669 kb on + strand, within MPMX20_03615at 3804.678 kb on - strand, within MPMX20_03615at 3804.708 kb on + strand, within MPMX20_03615at 3804.708 kb on + strand, within MPMX20_03615at 3804.716 kb on - strand, within MPMX20_03615at 3804.782 kb on + strand, within MPMX20_03615at 3804.803 kb on + strand, within MPMX20_03615at 3804.819 kb on + strand, within MPMX20_03615at 3804.834 kb on - strand, within MPMX20_03615at 3804.908 kb on - strand, within MPMX20_03615at 3804.972 kb on - strand, within MPMX20_03615at 3804.974 kb on + strand, within MPMX20_03615at 3804.979 kb on + strand, within MPMX20_03615at 3805.010 kb on + strand, within MPMX20_03615at 3805.028 kb on + strandat 3805.033 kb on + strandat 3805.095 kb on + strandat 3805.174 kb on + strandat 3805.182 kb on - strandat 3805.206 kb on + strandat 3805.220 kb on + strandat 3805.239 kb on + strandat 3805.248 kb on - strandat 3805.276 kb on - strandat 3805.339 kb on + strandat 3805.339 kb on + strandat 3805.339 kb on + strandat 3805.339 kb on + strandat 3805.339 kb on + strandat 3805.341 kb on - strandat 3805.347 kb on - strandat 3805.409 kb on - strand, within MPMX20_03616at 3805.409 kb on - strand, within MPMX20_03616at 3805.431 kb on - strand, within MPMX20_03616at 3805.468 kb on + strand, within MPMX20_03616at 3805.553 kb on + strand, within MPMX20_03616at 3805.607 kb on + strand, within MPMX20_03616at 3805.607 kb on + strand, within MPMX20_03616at 3805.608 kb on - strand, within MPMX20_03616at 3805.640 kb on + strand, within MPMX20_03616at 3805.650 kb on - strand, within MPMX20_03616at 3805.660 kb on - strand, within MPMX20_03616at 3805.752 kb on + strand, within MPMX20_03616at 3805.844 kb on + strand, within MPMX20_03616at 3805.856 kb on + strand, within MPMX20_03616at 3805.876 kb on - strand, within MPMX20_03616at 3805.888 kb on - strand, within MPMX20_03616at 3805.913 kb on + strand, within MPMX20_03616at 3805.913 kb on + strand, within MPMX20_03616at 3805.921 kb on - strand, within MPMX20_03616at 3805.921 kb on - strand, within MPMX20_03616at 3805.921 kb on - strand, within MPMX20_03616at 3805.924 kb on + strand, within MPMX20_03616at 3805.924 kb on + strand, within MPMX20_03616at 3805.932 kb on - strand, within MPMX20_03616at 3806.005 kb on - strand, within MPMX20_03616at 3806.023 kb on - strand, within MPMX20_03616at 3806.088 kb on + strand, within MPMX20_03616at 3806.134 kb on + strand, within MPMX20_03616at 3806.137 kb on + strand, within MPMX20_03616at 3806.208 kb on - strand, within MPMX20_03616at 3806.210 kb on + strand, within MPMX20_03616at 3806.337 kb on + strand, within MPMX20_03616at 3806.337 kb on + strand, within MPMX20_03616at 3806.337 kb on + strand, within MPMX20_03616at 3806.345 kb on - strand, within MPMX20_03616at 3806.345 kb on - strand, within MPMX20_03616at 3806.345 kb on - strand, within MPMX20_03616at 3806.368 kb on - strand, within MPMX20_03616at 3806.368 kb on - strand, within MPMX20_03616at 3806.391 kb on + strand, within MPMX20_03616at 3806.391 kb on + strand, within MPMX20_03616at 3806.394 kb on - strand, within MPMX20_03616at 3806.399 kb on - strand, within MPMX20_03616at 3806.467 kb on - strand, within MPMX20_03616at 3806.499 kb on - strand, within MPMX20_03616at 3806.513 kb on + strand, within MPMX20_03616at 3806.571 kb on + strand, within MPMX20_03616at 3806.579 kb on - strand, within MPMX20_03616at 3806.579 kb on - strand, within MPMX20_03616at 3806.635 kb on + strand, within MPMX20_03616at 3806.648 kb on + strand, within MPMX20_03616at 3806.841 kb on - strand, within MPMX20_03616at 3806.855 kb on - strand, within MPMX20_03616at 3806.953 kb on - strand, within MPMX20_03616at 3807.076 kb on - strandat 3807.137 kb on + strandat 3807.145 kb on - strandat 3807.155 kb on - strandat 3807.239 kb on - strandat 3807.239 kb on - strandat 3807.249 kb on - strandat 3807.249 kb on - strandat 3807.251 kb on + strandat 3807.419 kb on + strand, within MPMX20_03617at 3807.427 kb on - strand, within MPMX20_03617at 3807.427 kb on - strand, within MPMX20_03617at 3807.488 kb on + strand, within MPMX20_03617at 3807.606 kb on - strand, within MPMX20_03617at 3807.606 kb on - strand, within MPMX20_03617at 3807.606 kb on - strand, within MPMX20_03617at 3807.610 kb on - strand, within MPMX20_03617at 3807.728 kb on + strandat 3807.762 kb on - strandat 3807.762 kb on - strandat 3807.908 kb on + strand, within MPMX20_03618at 3807.932 kb on - strand, within MPMX20_03618at 3807.948 kb on + strand, within MPMX20_03618at 3808.002 kb on - strand, within MPMX20_03618at 3808.004 kb on + strand, within MPMX20_03618at 3808.004 kb on + strand, within MPMX20_03618at 3808.012 kb on - strand, within MPMX20_03618at 3808.012 kb on - strand, within MPMX20_03618at 3808.117 kb on - strandat 3808.220 kb on + strandat 3808.238 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
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3,804,191 + -1.3
3,804,199 - +0.2
3,804,353 - MPMX20_03615 0.25 -1.2
3,804,372 + MPMX20_03615 0.26 -0.5
3,804,380 - MPMX20_03615 0.27 -2.5
3,804,393 + MPMX20_03615 0.28 -0.3
3,804,394 + MPMX20_03615 0.29 +2.3
3,804,446 - MPMX20_03615 0.34 +0.4
3,804,520 - MPMX20_03615 0.41 -0.6
3,804,531 + MPMX20_03615 0.42 -0.5
3,804,559 - MPMX20_03615 0.45 +1.0
3,804,651 + MPMX20_03615 0.54 +0.2
3,804,669 + MPMX20_03615 0.56 -0.3
3,804,669 + MPMX20_03615 0.56 -0.9
3,804,678 - MPMX20_03615 0.57 +1.7
3,804,708 + MPMX20_03615 0.60 -0.4
3,804,708 + MPMX20_03615 0.60 -0.7
3,804,716 - MPMX20_03615 0.60 -1.5
3,804,782 + MPMX20_03615 0.67 -2.2
3,804,803 + MPMX20_03615 0.69 -0.9
3,804,819 + MPMX20_03615 0.71 +0.6
3,804,834 - MPMX20_03615 0.72 -0.6
3,804,908 - MPMX20_03615 0.79 -1.2
3,804,972 - MPMX20_03615 0.86 -1.0
3,804,974 + MPMX20_03615 0.86 +0.4
3,804,979 + MPMX20_03615 0.86 +1.2
3,805,010 + MPMX20_03615 0.90 -1.6
3,805,028 + +0.3
3,805,033 + -0.1
3,805,095 + -0.7
3,805,174 + +0.3
3,805,182 - +2.3
3,805,206 + +0.4
3,805,220 + -1.3
3,805,239 + +0.2
3,805,248 - +1.3
3,805,276 - +1.3
3,805,339 + -1.4
3,805,339 + -1.2
3,805,339 + +1.7
3,805,339 + +0.7
3,805,339 + +2.3
3,805,341 - +0.3
3,805,347 - -2.2
3,805,409 - MPMX20_03616 0.11 +2.6
3,805,409 - MPMX20_03616 0.11 +1.3
3,805,431 - MPMX20_03616 0.12 +0.1
3,805,468 + MPMX20_03616 0.14 +0.5
3,805,553 + MPMX20_03616 0.18 -0.6
3,805,607 + MPMX20_03616 0.21 -1.2
3,805,607 + MPMX20_03616 0.21 -1.2
3,805,608 - MPMX20_03616 0.21 -1.8
3,805,640 + MPMX20_03616 0.22 -1.6
3,805,650 - MPMX20_03616 0.23 +0.6
3,805,660 - MPMX20_03616 0.23 +1.0
3,805,752 + MPMX20_03616 0.28 +0.6
3,805,844 + MPMX20_03616 0.32 -1.4
3,805,856 + MPMX20_03616 0.33 +1.3
3,805,876 - MPMX20_03616 0.34 +0.5
3,805,888 - MPMX20_03616 0.34 -0.2
3,805,913 + MPMX20_03616 0.35 +0.3
3,805,913 + MPMX20_03616 0.35 +1.4
3,805,921 - MPMX20_03616 0.36 +0.0
3,805,921 - MPMX20_03616 0.36 +1.0
3,805,921 - MPMX20_03616 0.36 -0.5
3,805,924 + MPMX20_03616 0.36 +0.3
3,805,924 + MPMX20_03616 0.36 -0.8
3,805,932 - MPMX20_03616 0.36 -0.3
3,806,005 - MPMX20_03616 0.40 -1.2
3,806,023 - MPMX20_03616 0.41 -1.3
3,806,088 + MPMX20_03616 0.44 +0.4
3,806,134 + MPMX20_03616 0.46 -1.3
3,806,137 + MPMX20_03616 0.46 +0.9
3,806,208 - MPMX20_03616 0.50 -0.3
3,806,210 + MPMX20_03616 0.50 -2.1
3,806,337 + MPMX20_03616 0.56 -1.7
3,806,337 + MPMX20_03616 0.56 -0.4
3,806,337 + MPMX20_03616 0.56 +2.3
3,806,345 - MPMX20_03616 0.56 -1.4
3,806,345 - MPMX20_03616 0.56 +0.7
3,806,345 - MPMX20_03616 0.56 -1.2
3,806,368 - MPMX20_03616 0.57 -0.5
3,806,368 - MPMX20_03616 0.57 +0.7
3,806,391 + MPMX20_03616 0.58 +1.3
3,806,391 + MPMX20_03616 0.58 -0.3
3,806,394 - MPMX20_03616 0.59 -0.5
3,806,399 - MPMX20_03616 0.59 -0.2
3,806,467 - MPMX20_03616 0.62 -0.5
3,806,499 - MPMX20_03616 0.64 +0.6
3,806,513 + MPMX20_03616 0.64 +0.3
3,806,571 + MPMX20_03616 0.67 +0.7
3,806,579 - MPMX20_03616 0.68 -0.8
3,806,579 - MPMX20_03616 0.68 +0.7
3,806,635 + MPMX20_03616 0.70 -0.5
3,806,648 + MPMX20_03616 0.71 +0.3
3,806,841 - MPMX20_03616 0.80 +2.5
3,806,855 - MPMX20_03616 0.81 -1.2
3,806,953 - MPMX20_03616 0.86 +0.4
3,807,076 - -0.5
3,807,137 + -0.1
3,807,145 - +0.9
3,807,155 - -0.0
3,807,239 - +0.3
3,807,239 - +2.3
3,807,249 - +2.0
3,807,249 - -1.2
3,807,251 + +0.9
3,807,419 + MPMX20_03617 0.29 +0.8
3,807,427 - MPMX20_03617 0.32 -1.0
3,807,427 - MPMX20_03617 0.32 +0.3
3,807,488 + MPMX20_03617 0.49 +0.1
3,807,606 - MPMX20_03617 0.83 -0.2
3,807,606 - MPMX20_03617 0.83 +0.3
3,807,606 - MPMX20_03617 0.83 -0.9
3,807,610 - MPMX20_03617 0.85 -0.3
3,807,728 + +0.3
3,807,762 - -0.1
3,807,762 - +1.4
3,807,908 + MPMX20_03618 0.31 -0.9
3,807,932 - MPMX20_03618 0.41 -0.0
3,807,948 + MPMX20_03618 0.48 -0.8
3,808,002 - MPMX20_03618 0.71 +0.1
3,808,004 + MPMX20_03618 0.72 -1.1
3,808,004 + MPMX20_03618 0.72 -1.9
3,808,012 - MPMX20_03618 0.76 +2.7
3,808,012 - MPMX20_03618 0.76 +1.2
3,808,117 - -1.2
3,808,220 + +0.7
3,808,238 - +2.0

Or see this region's nucleotide sequence