Experiment: M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02785 and MPMX20_02786 are separated by 10 nucleotides MPMX20_02786 and MPMX20_02787 are separated by 17 nucleotides MPMX20_02787 and MPMX20_02788 overlap by 4 nucleotides MPMX20_02788 and MPMX20_02789 are separated by 19 nucleotides
MPMX20_02785: MPMX20_02785 - Protein phosphatase CheZ, at 2,941,251 to 2,941,898
_02785
MPMX20_02786: MPMX20_02786 - Chemotaxis protein CheY, at 2,941,909 to 2,942,298
_02786
MPMX20_02787: MPMX20_02787 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 2,942,316 to 2,943,365
_02787
MPMX20_02788: MPMX20_02788 - Chemotaxis protein methyltransferase, at 2,943,362 to 2,944,228
_02788
MPMX20_02789: MPMX20_02789 - Methyl-accepting chemotaxis protein IV, at 2,944,248 to 2,945,849
_02789
Position (kb)
2942
2943
2944 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5
6
7
8 at 2941.330 kb on + strand, within MPMX20_02785 at 2941.333 kb on + strand, within MPMX20_02785 at 2941.346 kb on - strand, within MPMX20_02785 at 2941.441 kb on - strand, within MPMX20_02785 at 2941.452 kb on + strand, within MPMX20_02785 at 2941.512 kb on + strand, within MPMX20_02785 at 2941.520 kb on - strand, within MPMX20_02785 at 2941.529 kb on - strand, within MPMX20_02785 at 2941.576 kb on - strand, within MPMX20_02785 at 2941.583 kb on - strand, within MPMX20_02785 at 2941.673 kb on + strand, within MPMX20_02785 at 2941.673 kb on + strand, within MPMX20_02785 at 2941.681 kb on - strand, within MPMX20_02785 at 2941.683 kb on + strand, within MPMX20_02785 at 2941.691 kb on - strand, within MPMX20_02785 at 2941.713 kb on + strand, within MPMX20_02785 at 2941.721 kb on - strand, within MPMX20_02785 at 2941.721 kb on - strand, within MPMX20_02785 at 2941.721 kb on - strand, within MPMX20_02785 at 2941.728 kb on + strand, within MPMX20_02785 at 2941.731 kb on - strand, within MPMX20_02785 at 2941.731 kb on - strand, within MPMX20_02785 at 2941.736 kb on - strand, within MPMX20_02785 at 2941.822 kb on - strand, within MPMX20_02785 at 2941.836 kb on - strand at 2941.964 kb on + strand, within MPMX20_02786 at 2941.996 kb on + strand, within MPMX20_02786 at 2942.095 kb on - strand, within MPMX20_02786 at 2942.097 kb on + strand, within MPMX20_02786 at 2942.097 kb on + strand, within MPMX20_02786 at 2942.097 kb on + strand, within MPMX20_02786 at 2942.097 kb on + strand, within MPMX20_02786 at 2942.097 kb on + strand, within MPMX20_02786 at 2942.105 kb on - strand, within MPMX20_02786 at 2942.105 kb on - strand, within MPMX20_02786 at 2942.105 kb on - strand, within MPMX20_02786 at 2942.105 kb on - strand, within MPMX20_02786 at 2942.105 kb on - strand, within MPMX20_02786 at 2942.105 kb on - strand, within MPMX20_02786 at 2942.175 kb on - strand, within MPMX20_02786 at 2942.248 kb on - strand, within MPMX20_02786 at 2942.252 kb on + strand, within MPMX20_02786 at 2942.323 kb on + strand at 2942.331 kb on - strand at 2942.341 kb on - strand at 2942.508 kb on + strand, within MPMX20_02787 at 2942.671 kb on - strand, within MPMX20_02787 at 2942.693 kb on - strand, within MPMX20_02787 at 2942.739 kb on + strand, within MPMX20_02787 at 2942.767 kb on - strand, within MPMX20_02787 at 2942.791 kb on + strand, within MPMX20_02787 at 2942.791 kb on - strand, within MPMX20_02787 at 2942.907 kb on + strand, within MPMX20_02787 at 2942.915 kb on - strand, within MPMX20_02787 at 2942.929 kb on + strand, within MPMX20_02787 at 2943.086 kb on + strand, within MPMX20_02787 at 2943.121 kb on - strand, within MPMX20_02787 at 2943.406 kb on + strand at 2943.463 kb on + strand, within MPMX20_02788 at 2943.468 kb on + strand, within MPMX20_02788 at 2943.468 kb on + strand, within MPMX20_02788 at 2943.468 kb on + strand, within MPMX20_02788 at 2943.476 kb on - strand, within MPMX20_02788 at 2943.615 kb on + strand, within MPMX20_02788 at 2943.641 kb on + strand, within MPMX20_02788 at 2943.658 kb on + strand, within MPMX20_02788 at 2943.658 kb on + strand, within MPMX20_02788 at 2943.675 kb on + strand, within MPMX20_02788 at 2943.689 kb on + strand, within MPMX20_02788 at 2943.697 kb on - strand, within MPMX20_02788 at 2943.699 kb on - strand, within MPMX20_02788 at 2943.773 kb on + strand, within MPMX20_02788 at 2943.788 kb on - strand, within MPMX20_02788 at 2943.822 kb on - strand, within MPMX20_02788 at 2943.834 kb on + strand, within MPMX20_02788 at 2943.844 kb on - strand, within MPMX20_02788 at 2943.867 kb on + strand, within MPMX20_02788 at 2943.867 kb on + strand, within MPMX20_02788 at 2943.880 kb on + strand, within MPMX20_02788 at 2943.918 kb on + strand, within MPMX20_02788 at 2943.920 kb on + strand, within MPMX20_02788 at 2943.952 kb on + strand, within MPMX20_02788 at 2943.960 kb on - strand, within MPMX20_02788 at 2943.985 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.995 kb on + strand, within MPMX20_02788 at 2943.998 kb on - strand, within MPMX20_02788 at 2944.003 kb on - strand, within MPMX20_02788 at 2944.003 kb on - strand, within MPMX20_02788 at 2944.003 kb on - strand, within MPMX20_02788 at 2944.042 kb on + strand, within MPMX20_02788 at 2944.073 kb on + strand, within MPMX20_02788 at 2944.073 kb on + strand, within MPMX20_02788 at 2944.073 kb on + strand, within MPMX20_02788 at 2944.073 kb on + strand, within MPMX20_02788 at 2944.073 kb on + strand, within MPMX20_02788 at 2944.081 kb on - strand, within MPMX20_02788 at 2944.081 kb on - strand, within MPMX20_02788 at 2944.081 kb on - strand, within MPMX20_02788 at 2944.081 kb on - strand, within MPMX20_02788 at 2944.081 kb on - strand, within MPMX20_02788 at 2944.192 kb on + strand at 2944.256 kb on + strand at 2944.267 kb on + strand at 2944.275 kb on - strand at 2944.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,941,330 + MPMX20_02785 0.12 +0.3 2,941,333 + MPMX20_02785 0.13 -1.0 2,941,346 - MPMX20_02785 0.15 -1.0 2,941,441 - MPMX20_02785 0.29 +1.1 2,941,452 + MPMX20_02785 0.31 +0.6 2,941,512 + MPMX20_02785 0.40 +0.7 2,941,520 - MPMX20_02785 0.42 -1.4 2,941,529 - MPMX20_02785 0.43 -1.3 2,941,576 - MPMX20_02785 0.50 +1.1 2,941,583 - MPMX20_02785 0.51 -1.4 2,941,673 + MPMX20_02785 0.65 +0.7 2,941,673 + MPMX20_02785 0.65 -2.1 2,941,681 - MPMX20_02785 0.66 +0.3 2,941,683 + MPMX20_02785 0.67 +0.1 2,941,691 - MPMX20_02785 0.68 -0.6 2,941,713 + MPMX20_02785 0.71 +0.5 2,941,721 - MPMX20_02785 0.73 -0.7 2,941,721 - MPMX20_02785 0.73 +2.4 2,941,721 - MPMX20_02785 0.73 -1.5 2,941,728 + MPMX20_02785 0.74 -1.9 2,941,731 - MPMX20_02785 0.74 +0.7 2,941,731 - MPMX20_02785 0.74 -0.1 2,941,736 - MPMX20_02785 0.75 -0.1 2,941,822 - MPMX20_02785 0.88 -0.7 2,941,836 - +1.2 2,941,964 + MPMX20_02786 0.14 +2.3 2,941,996 + MPMX20_02786 0.22 -0.7 2,942,095 - MPMX20_02786 0.48 +1.4 2,942,097 + MPMX20_02786 0.48 -0.8 2,942,097 + MPMX20_02786 0.48 +0.2 2,942,097 + MPMX20_02786 0.48 +7.8 2,942,097 + MPMX20_02786 0.48 -1.5 2,942,097 + MPMX20_02786 0.48 -0.3 2,942,105 - MPMX20_02786 0.50 -1.4 2,942,105 - MPMX20_02786 0.50 -1.6 2,942,105 - MPMX20_02786 0.50 -1.2 2,942,105 - MPMX20_02786 0.50 +0.8 2,942,105 - MPMX20_02786 0.50 +0.5 2,942,105 - MPMX20_02786 0.50 +1.0 2,942,175 - MPMX20_02786 0.68 -2.1 2,942,248 - MPMX20_02786 0.87 -0.5 2,942,252 + MPMX20_02786 0.88 -0.1 2,942,323 + +0.7 2,942,331 - -1.7 2,942,341 - -0.1 2,942,508 + MPMX20_02787 0.18 -0.9 2,942,671 - MPMX20_02787 0.34 -0.4 2,942,693 - MPMX20_02787 0.36 -0.6 2,942,739 + MPMX20_02787 0.40 +1.7 2,942,767 - MPMX20_02787 0.43 -1.4 2,942,791 + MPMX20_02787 0.45 -1.6 2,942,791 - MPMX20_02787 0.45 -0.9 2,942,907 + MPMX20_02787 0.56 -1.2 2,942,915 - MPMX20_02787 0.57 -0.3 2,942,929 + MPMX20_02787 0.58 -1.1 2,943,086 + MPMX20_02787 0.73 +0.7 2,943,121 - MPMX20_02787 0.77 +1.3 2,943,406 + -1.0 2,943,463 + MPMX20_02788 0.12 -0.8 2,943,468 + MPMX20_02788 0.12 +2.3 2,943,468 + MPMX20_02788 0.12 +0.3 2,943,468 + MPMX20_02788 0.12 -0.4 2,943,476 - MPMX20_02788 0.13 +1.3 2,943,615 + MPMX20_02788 0.29 -0.2 2,943,641 + MPMX20_02788 0.32 -1.2 2,943,658 + MPMX20_02788 0.34 -0.1 2,943,658 + MPMX20_02788 0.34 -0.3 2,943,675 + MPMX20_02788 0.36 +0.2 2,943,689 + MPMX20_02788 0.38 -0.4 2,943,697 - MPMX20_02788 0.39 +0.7 2,943,699 - MPMX20_02788 0.39 +0.3 2,943,773 + MPMX20_02788 0.47 +5.9 2,943,788 - MPMX20_02788 0.49 +0.7 2,943,822 - MPMX20_02788 0.53 +0.6 2,943,834 + MPMX20_02788 0.54 -0.2 2,943,844 - MPMX20_02788 0.56 -0.9 2,943,867 + MPMX20_02788 0.58 -1.0 2,943,867 + MPMX20_02788 0.58 -2.4 2,943,880 + MPMX20_02788 0.60 -0.2 2,943,918 + MPMX20_02788 0.64 +0.0 2,943,920 + MPMX20_02788 0.64 +0.9 2,943,952 + MPMX20_02788 0.68 +1.3 2,943,960 - MPMX20_02788 0.69 -0.1 2,943,985 + MPMX20_02788 0.72 -0.2 2,943,995 + MPMX20_02788 0.73 +2.0 2,943,995 + MPMX20_02788 0.73 +0.7 2,943,995 + MPMX20_02788 0.73 +0.5 2,943,995 + MPMX20_02788 0.73 +0.7 2,943,995 + MPMX20_02788 0.73 +0.1 2,943,995 + MPMX20_02788 0.73 -0.1 2,943,995 + MPMX20_02788 0.73 +0.4 2,943,998 - MPMX20_02788 0.73 -0.5 2,944,003 - MPMX20_02788 0.74 +0.6 2,944,003 - MPMX20_02788 0.74 +0.1 2,944,003 - MPMX20_02788 0.74 +8.0 2,944,042 + MPMX20_02788 0.78 -0.5 2,944,073 + MPMX20_02788 0.82 +0.9 2,944,073 + MPMX20_02788 0.82 -0.7 2,944,073 + MPMX20_02788 0.82 +0.5 2,944,073 + MPMX20_02788 0.82 -0.5 2,944,073 + MPMX20_02788 0.82 -0.5 2,944,081 - MPMX20_02788 0.83 +0.3 2,944,081 - MPMX20_02788 0.83 +0.1 2,944,081 - MPMX20_02788 0.83 +1.9 2,944,081 - MPMX20_02788 0.83 +0.1 2,944,081 - MPMX20_02788 0.83 -0.5 2,944,192 + -0.9 2,944,256 + +0.9 2,944,267 + +0.6 2,944,275 - -1.2 2,944,313 + -1.3
Or see this region's nucleotide sequence