Experiment: M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_02045 and MPMX20_02046 are separated by 7 nucleotides MPMX20_02046 and MPMX20_02047 are separated by 97 nucleotides MPMX20_02047 and MPMX20_02048 are separated by 66 nucleotides
MPMX20_02045: MPMX20_02045 - Protein UmuC, at 2,138,673 to 2,139,935
_02045
MPMX20_02046: MPMX20_02046 - HTH-type transcriptional regulator DmlR, at 2,139,943 to 2,140,824
_02046
MPMX20_02047: MPMX20_02047 - hypothetical protein, at 2,140,922 to 2,141,977
_02047
MPMX20_02048: MPMX20_02048 - HTH-type transcriptional regulator NorG, at 2,142,044 to 2,143,552
_02048
Position (kb)
2140
2141
2142 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2139.981 kb on + strand at 2139.986 kb on - strand at 2140.039 kb on - strand, within MPMX20_02046 at 2140.250 kb on - strand, within MPMX20_02046 at 2140.345 kb on - strand, within MPMX20_02046 at 2140.385 kb on + strand, within MPMX20_02046 at 2140.442 kb on + strand, within MPMX20_02046 at 2140.450 kb on - strand, within MPMX20_02046 at 2140.450 kb on - strand, within MPMX20_02046 at 2140.512 kb on + strand, within MPMX20_02046 at 2140.512 kb on + strand, within MPMX20_02046 at 2140.520 kb on - strand, within MPMX20_02046 at 2140.523 kb on + strand, within MPMX20_02046 at 2140.568 kb on + strand, within MPMX20_02046 at 2140.576 kb on - strand, within MPMX20_02046 at 2140.578 kb on - strand, within MPMX20_02046 at 2140.631 kb on + strand, within MPMX20_02046 at 2140.631 kb on + strand, within MPMX20_02046 at 2140.639 kb on - strand, within MPMX20_02046 at 2140.639 kb on - strand, within MPMX20_02046 at 2140.639 kb on - strand, within MPMX20_02046 at 2140.639 kb on - strand, within MPMX20_02046 at 2140.669 kb on - strand, within MPMX20_02046 at 2140.698 kb on + strand, within MPMX20_02046 at 2140.760 kb on + strand at 2140.795 kb on + strand at 2140.813 kb on - strand at 2140.852 kb on - strand at 2140.893 kb on + strand at 2140.897 kb on + strand at 2140.944 kb on + strand at 2141.042 kb on + strand, within MPMX20_02047 at 2141.042 kb on + strand, within MPMX20_02047 at 2141.042 kb on + strand, within MPMX20_02047 at 2141.050 kb on - strand, within MPMX20_02047 at 2141.050 kb on - strand, within MPMX20_02047 at 2141.050 kb on - strand, within MPMX20_02047 at 2141.055 kb on - strand, within MPMX20_02047 at 2141.098 kb on + strand, within MPMX20_02047 at 2141.104 kb on + strand, within MPMX20_02047 at 2141.104 kb on + strand, within MPMX20_02047 at 2141.104 kb on + strand, within MPMX20_02047 at 2141.106 kb on - strand, within MPMX20_02047 at 2141.106 kb on - strand, within MPMX20_02047 at 2141.112 kb on - strand, within MPMX20_02047 at 2141.161 kb on - strand, within MPMX20_02047 at 2141.253 kb on + strand, within MPMX20_02047 at 2141.261 kb on - strand, within MPMX20_02047 at 2141.261 kb on - strand, within MPMX20_02047 at 2141.261 kb on - strand, within MPMX20_02047 at 2141.261 kb on - strand, within MPMX20_02047 at 2141.261 kb on - strand, within MPMX20_02047 at 2141.279 kb on + strand, within MPMX20_02047 at 2141.279 kb on + strand, within MPMX20_02047 at 2141.286 kb on - strand, within MPMX20_02047 at 2141.293 kb on + strand, within MPMX20_02047 at 2141.302 kb on + strand, within MPMX20_02047 at 2141.302 kb on + strand, within MPMX20_02047 at 2141.302 kb on + strand, within MPMX20_02047 at 2141.358 kb on - strand, within MPMX20_02047 at 2141.421 kb on + strand, within MPMX20_02047 at 2141.439 kb on + strand, within MPMX20_02047 at 2141.447 kb on - strand, within MPMX20_02047 at 2141.447 kb on - strand, within MPMX20_02047 at 2141.457 kb on + strand, within MPMX20_02047 at 2141.471 kb on - strand, within MPMX20_02047 at 2141.473 kb on + strand, within MPMX20_02047 at 2141.473 kb on + strand, within MPMX20_02047 at 2141.485 kb on + strand, within MPMX20_02047 at 2141.487 kb on + strand, within MPMX20_02047 at 2141.493 kb on - strand, within MPMX20_02047 at 2141.495 kb on - strand, within MPMX20_02047 at 2141.497 kb on + strand, within MPMX20_02047 at 2141.497 kb on + strand, within MPMX20_02047 at 2141.497 kb on + strand, within MPMX20_02047 at 2141.504 kb on + strand, within MPMX20_02047 at 2141.505 kb on - strand, within MPMX20_02047 at 2141.505 kb on - strand, within MPMX20_02047 at 2141.505 kb on - strand, within MPMX20_02047 at 2141.505 kb on - strand, within MPMX20_02047 at 2141.505 kb on - strand, within MPMX20_02047 at 2141.505 kb on - strand, within MPMX20_02047 at 2141.505 kb on - strand, within MPMX20_02047 at 2141.505 kb on - strand, within MPMX20_02047 at 2141.505 kb on - strand, within MPMX20_02047 at 2141.505 kb on - strand, within MPMX20_02047 at 2141.505 kb on - strand, within MPMX20_02047 at 2141.509 kb on + strand, within MPMX20_02047 at 2141.509 kb on + strand, within MPMX20_02047 at 2141.512 kb on - strand, within MPMX20_02047 at 2141.532 kb on + strand, within MPMX20_02047 at 2141.542 kb on + strand, within MPMX20_02047 at 2141.543 kb on + strand, within MPMX20_02047 at 2141.551 kb on - strand, within MPMX20_02047 at 2141.553 kb on + strand, within MPMX20_02047 at 2141.589 kb on + strand, within MPMX20_02047 at 2141.596 kb on + strand, within MPMX20_02047 at 2141.599 kb on + strand, within MPMX20_02047 at 2141.618 kb on - strand, within MPMX20_02047 at 2141.656 kb on + strand, within MPMX20_02047 at 2141.696 kb on - strand, within MPMX20_02047 at 2141.705 kb on - strand, within MPMX20_02047 at 2141.710 kb on - strand, within MPMX20_02047 at 2141.720 kb on - strand, within MPMX20_02047 at 2141.746 kb on + strand, within MPMX20_02047 at 2141.892 kb on + strand at 2141.895 kb on - strand at 2141.897 kb on + strand at 2141.908 kb on + strand at 2141.950 kb on + strand at 2141.950 kb on + strand at 2141.958 kb on - strand at 2141.958 kb on - strand at 2142.075 kb on - strand at 2142.075 kb on - strand at 2142.085 kb on + strand at 2142.085 kb on + strand at 2142.128 kb on - strand at 2142.137 kb on + strand at 2142.170 kb on + strand at 2142.199 kb on + strand, within MPMX20_02048 at 2142.207 kb on - strand, within MPMX20_02048 at 2142.244 kb on + strand, within MPMX20_02048 at 2142.244 kb on + strand, within MPMX20_02048 at 2142.252 kb on - strand, within MPMX20_02048 at 2142.257 kb on + strand, within MPMX20_02048 at 2142.263 kb on + strand, within MPMX20_02048 at 2142.446 kb on - strand, within MPMX20_02048 at 2142.446 kb on - strand, within MPMX20_02048 at 2142.491 kb on - strand, within MPMX20_02048 at 2142.511 kb on + strand, within MPMX20_02048 at 2142.643 kb on - strand, within MPMX20_02048 at 2142.680 kb on - strand, within MPMX20_02048 at 2142.716 kb on + strand, within MPMX20_02048 at 2142.749 kb on + strand, within MPMX20_02048 at 2142.769 kb on - strand, within MPMX20_02048 at 2142.841 kb on - strand, within MPMX20_02048 at 2142.971 kb on + strand, within MPMX20_02048
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,139,981 + +0.7 2,139,986 - +0.5 2,140,039 - MPMX20_02046 0.11 -1.5 2,140,250 - MPMX20_02046 0.35 +0.6 2,140,345 - MPMX20_02046 0.46 +0.3 2,140,385 + MPMX20_02046 0.50 -1.4 2,140,442 + MPMX20_02046 0.57 -0.3 2,140,450 - MPMX20_02046 0.57 -0.6 2,140,450 - MPMX20_02046 0.57 -0.1 2,140,512 + MPMX20_02046 0.65 +1.3 2,140,512 + MPMX20_02046 0.65 +1.8 2,140,520 - MPMX20_02046 0.65 -0.2 2,140,523 + MPMX20_02046 0.66 +2.5 2,140,568 + MPMX20_02046 0.71 +0.5 2,140,576 - MPMX20_02046 0.72 +0.7 2,140,578 - MPMX20_02046 0.72 +0.1 2,140,631 + MPMX20_02046 0.78 +0.2 2,140,631 + MPMX20_02046 0.78 -1.1 2,140,639 - MPMX20_02046 0.79 +1.7 2,140,639 - MPMX20_02046 0.79 +0.2 2,140,639 - MPMX20_02046 0.79 +1.3 2,140,639 - MPMX20_02046 0.79 -0.8 2,140,669 - MPMX20_02046 0.82 -2.1 2,140,698 + MPMX20_02046 0.86 -1.0 2,140,760 + +0.0 2,140,795 + -0.6 2,140,813 - +0.5 2,140,852 - -0.7 2,140,893 + -1.7 2,140,897 + -1.5 2,140,944 + +2.9 2,141,042 + MPMX20_02047 0.11 -0.5 2,141,042 + MPMX20_02047 0.11 -0.9 2,141,042 + MPMX20_02047 0.11 -0.6 2,141,050 - MPMX20_02047 0.12 +1.2 2,141,050 - MPMX20_02047 0.12 -0.9 2,141,050 - MPMX20_02047 0.12 +0.9 2,141,055 - MPMX20_02047 0.13 -1.1 2,141,098 + MPMX20_02047 0.17 +0.2 2,141,104 + MPMX20_02047 0.17 -1.6 2,141,104 + MPMX20_02047 0.17 -1.4 2,141,104 + MPMX20_02047 0.17 +0.8 2,141,106 - MPMX20_02047 0.17 -1.0 2,141,106 - MPMX20_02047 0.17 +1.8 2,141,112 - MPMX20_02047 0.18 +1.2 2,141,161 - MPMX20_02047 0.23 -0.5 2,141,253 + MPMX20_02047 0.31 -0.0 2,141,261 - MPMX20_02047 0.32 -0.4 2,141,261 - MPMX20_02047 0.32 -0.3 2,141,261 - MPMX20_02047 0.32 -0.6 2,141,261 - MPMX20_02047 0.32 +0.4 2,141,261 - MPMX20_02047 0.32 +0.9 2,141,279 + MPMX20_02047 0.34 +3.3 2,141,279 + MPMX20_02047 0.34 -0.0 2,141,286 - MPMX20_02047 0.34 +0.3 2,141,293 + MPMX20_02047 0.35 -0.3 2,141,302 + MPMX20_02047 0.36 +1.5 2,141,302 + MPMX20_02047 0.36 -1.0 2,141,302 + MPMX20_02047 0.36 +1.9 2,141,358 - MPMX20_02047 0.41 +0.2 2,141,421 + MPMX20_02047 0.47 +0.3 2,141,439 + MPMX20_02047 0.49 +1.3 2,141,447 - MPMX20_02047 0.50 -0.9 2,141,447 - MPMX20_02047 0.50 -0.2 2,141,457 + MPMX20_02047 0.51 -1.5 2,141,471 - MPMX20_02047 0.52 -0.0 2,141,473 + MPMX20_02047 0.52 +1.6 2,141,473 + MPMX20_02047 0.52 +0.7 2,141,485 + MPMX20_02047 0.53 -1.2 2,141,487 + MPMX20_02047 0.54 +2.8 2,141,493 - MPMX20_02047 0.54 -0.8 2,141,495 - MPMX20_02047 0.54 +0.1 2,141,497 + MPMX20_02047 0.54 +0.5 2,141,497 + MPMX20_02047 0.54 +1.0 2,141,497 + MPMX20_02047 0.54 -1.2 2,141,504 + MPMX20_02047 0.55 +0.4 2,141,505 - MPMX20_02047 0.55 -0.2 2,141,505 - MPMX20_02047 0.55 +4.1 2,141,505 - MPMX20_02047 0.55 -0.9 2,141,505 - MPMX20_02047 0.55 -1.1 2,141,505 - MPMX20_02047 0.55 +0.8 2,141,505 - MPMX20_02047 0.55 -0.2 2,141,505 - MPMX20_02047 0.55 -1.1 2,141,505 - MPMX20_02047 0.55 +0.2 2,141,505 - MPMX20_02047 0.55 +1.1 2,141,505 - MPMX20_02047 0.55 -1.3 2,141,505 - MPMX20_02047 0.55 -1.0 2,141,509 + MPMX20_02047 0.56 +1.3 2,141,509 + MPMX20_02047 0.56 -1.6 2,141,512 - MPMX20_02047 0.56 -0.7 2,141,532 + MPMX20_02047 0.58 -0.7 2,141,542 + MPMX20_02047 0.59 +0.7 2,141,543 + MPMX20_02047 0.59 -0.2 2,141,551 - MPMX20_02047 0.60 +1.6 2,141,553 + MPMX20_02047 0.60 +0.2 2,141,589 + MPMX20_02047 0.63 +0.3 2,141,596 + MPMX20_02047 0.64 +0.3 2,141,599 + MPMX20_02047 0.64 +1.4 2,141,618 - MPMX20_02047 0.66 -3.6 2,141,656 + MPMX20_02047 0.70 -1.5 2,141,696 - MPMX20_02047 0.73 +1.9 2,141,705 - MPMX20_02047 0.74 +0.9 2,141,710 - MPMX20_02047 0.75 +0.1 2,141,720 - MPMX20_02047 0.76 +0.2 2,141,746 + MPMX20_02047 0.78 -1.7 2,141,892 + +1.3 2,141,895 - +0.3 2,141,897 + -0.4 2,141,908 + -0.2 2,141,950 + -0.2 2,141,950 + -1.9 2,141,958 - -0.4 2,141,958 - -0.2 2,142,075 - -0.1 2,142,075 - +0.4 2,142,085 + -0.7 2,142,085 + -1.9 2,142,128 - -0.8 2,142,137 + -1.9 2,142,170 + +1.0 2,142,199 + MPMX20_02048 0.10 +1.1 2,142,207 - MPMX20_02048 0.11 +1.3 2,142,244 + MPMX20_02048 0.13 -0.0 2,142,244 + MPMX20_02048 0.13 -1.0 2,142,252 - MPMX20_02048 0.14 +0.6 2,142,257 + MPMX20_02048 0.14 -0.3 2,142,263 + MPMX20_02048 0.15 +0.5 2,142,446 - MPMX20_02048 0.27 +0.7 2,142,446 - MPMX20_02048 0.27 +0.4 2,142,491 - MPMX20_02048 0.30 -0.3 2,142,511 + MPMX20_02048 0.31 +4.1 2,142,643 - MPMX20_02048 0.40 +1.1 2,142,680 - MPMX20_02048 0.42 -0.9 2,142,716 + MPMX20_02048 0.45 +1.6 2,142,749 + MPMX20_02048 0.47 -0.6 2,142,769 - MPMX20_02048 0.48 +0.7 2,142,841 - MPMX20_02048 0.53 -0.1 2,142,971 + MPMX20_02048 0.61 +2.3
Or see this region's nucleotide sequence