Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_02047

Experiment: M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_02045 and MPMX20_02046 are separated by 7 nucleotidesMPMX20_02046 and MPMX20_02047 are separated by 97 nucleotidesMPMX20_02047 and MPMX20_02048 are separated by 66 nucleotides MPMX20_02045: MPMX20_02045 - Protein UmuC, at 2,138,673 to 2,139,935 _02045 MPMX20_02046: MPMX20_02046 - HTH-type transcriptional regulator DmlR, at 2,139,943 to 2,140,824 _02046 MPMX20_02047: MPMX20_02047 - hypothetical protein, at 2,140,922 to 2,141,977 _02047 MPMX20_02048: MPMX20_02048 - HTH-type transcriptional regulator NorG, at 2,142,044 to 2,143,552 _02048 Position (kb) 2140 2141 2142Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2139.981 kb on + strandat 2139.986 kb on - strandat 2140.039 kb on - strand, within MPMX20_02046at 2140.250 kb on - strand, within MPMX20_02046at 2140.345 kb on - strand, within MPMX20_02046at 2140.385 kb on + strand, within MPMX20_02046at 2140.442 kb on + strand, within MPMX20_02046at 2140.450 kb on - strand, within MPMX20_02046at 2140.450 kb on - strand, within MPMX20_02046at 2140.512 kb on + strand, within MPMX20_02046at 2140.512 kb on + strand, within MPMX20_02046at 2140.520 kb on - strand, within MPMX20_02046at 2140.523 kb on + strand, within MPMX20_02046at 2140.568 kb on + strand, within MPMX20_02046at 2140.576 kb on - strand, within MPMX20_02046at 2140.578 kb on - strand, within MPMX20_02046at 2140.631 kb on + strand, within MPMX20_02046at 2140.631 kb on + strand, within MPMX20_02046at 2140.639 kb on - strand, within MPMX20_02046at 2140.639 kb on - strand, within MPMX20_02046at 2140.639 kb on - strand, within MPMX20_02046at 2140.639 kb on - strand, within MPMX20_02046at 2140.669 kb on - strand, within MPMX20_02046at 2140.698 kb on + strand, within MPMX20_02046at 2140.760 kb on + strandat 2140.795 kb on + strandat 2140.813 kb on - strandat 2140.852 kb on - strandat 2140.893 kb on + strandat 2140.897 kb on + strandat 2140.944 kb on + strandat 2141.042 kb on + strand, within MPMX20_02047at 2141.042 kb on + strand, within MPMX20_02047at 2141.042 kb on + strand, within MPMX20_02047at 2141.050 kb on - strand, within MPMX20_02047at 2141.050 kb on - strand, within MPMX20_02047at 2141.050 kb on - strand, within MPMX20_02047at 2141.055 kb on - strand, within MPMX20_02047at 2141.098 kb on + strand, within MPMX20_02047at 2141.104 kb on + strand, within MPMX20_02047at 2141.104 kb on + strand, within MPMX20_02047at 2141.104 kb on + strand, within MPMX20_02047at 2141.106 kb on - strand, within MPMX20_02047at 2141.106 kb on - strand, within MPMX20_02047at 2141.112 kb on - strand, within MPMX20_02047at 2141.161 kb on - strand, within MPMX20_02047at 2141.253 kb on + strand, within MPMX20_02047at 2141.261 kb on - strand, within MPMX20_02047at 2141.261 kb on - strand, within MPMX20_02047at 2141.261 kb on - strand, within MPMX20_02047at 2141.261 kb on - strand, within MPMX20_02047at 2141.261 kb on - strand, within MPMX20_02047at 2141.279 kb on + strand, within MPMX20_02047at 2141.279 kb on + strand, within MPMX20_02047at 2141.286 kb on - strand, within MPMX20_02047at 2141.293 kb on + strand, within MPMX20_02047at 2141.302 kb on + strand, within MPMX20_02047at 2141.302 kb on + strand, within MPMX20_02047at 2141.302 kb on + strand, within MPMX20_02047at 2141.358 kb on - strand, within MPMX20_02047at 2141.421 kb on + strand, within MPMX20_02047at 2141.439 kb on + strand, within MPMX20_02047at 2141.447 kb on - strand, within MPMX20_02047at 2141.447 kb on - strand, within MPMX20_02047at 2141.457 kb on + strand, within MPMX20_02047at 2141.471 kb on - strand, within MPMX20_02047at 2141.473 kb on + strand, within MPMX20_02047at 2141.473 kb on + strand, within MPMX20_02047at 2141.485 kb on + strand, within MPMX20_02047at 2141.487 kb on + strand, within MPMX20_02047at 2141.493 kb on - strand, within MPMX20_02047at 2141.495 kb on - strand, within MPMX20_02047at 2141.497 kb on + strand, within MPMX20_02047at 2141.497 kb on + strand, within MPMX20_02047at 2141.497 kb on + strand, within MPMX20_02047at 2141.504 kb on + strand, within MPMX20_02047at 2141.505 kb on - strand, within MPMX20_02047at 2141.505 kb on - strand, within MPMX20_02047at 2141.505 kb on - strand, within MPMX20_02047at 2141.505 kb on - strand, within MPMX20_02047at 2141.505 kb on - strand, within MPMX20_02047at 2141.505 kb on - strand, within MPMX20_02047at 2141.505 kb on - strand, within MPMX20_02047at 2141.505 kb on - strand, within MPMX20_02047at 2141.505 kb on - strand, within MPMX20_02047at 2141.505 kb on - strand, within MPMX20_02047at 2141.505 kb on - strand, within MPMX20_02047at 2141.509 kb on + strand, within MPMX20_02047at 2141.509 kb on + strand, within MPMX20_02047at 2141.512 kb on - strand, within MPMX20_02047at 2141.532 kb on + strand, within MPMX20_02047at 2141.542 kb on + strand, within MPMX20_02047at 2141.543 kb on + strand, within MPMX20_02047at 2141.551 kb on - strand, within MPMX20_02047at 2141.553 kb on + strand, within MPMX20_02047at 2141.589 kb on + strand, within MPMX20_02047at 2141.596 kb on + strand, within MPMX20_02047at 2141.599 kb on + strand, within MPMX20_02047at 2141.618 kb on - strand, within MPMX20_02047at 2141.656 kb on + strand, within MPMX20_02047at 2141.696 kb on - strand, within MPMX20_02047at 2141.705 kb on - strand, within MPMX20_02047at 2141.710 kb on - strand, within MPMX20_02047at 2141.720 kb on - strand, within MPMX20_02047at 2141.746 kb on + strand, within MPMX20_02047at 2141.892 kb on + strandat 2141.895 kb on - strandat 2141.897 kb on + strandat 2141.908 kb on + strandat 2141.950 kb on + strandat 2141.950 kb on + strandat 2141.958 kb on - strandat 2141.958 kb on - strandat 2142.075 kb on - strandat 2142.075 kb on - strandat 2142.085 kb on + strandat 2142.085 kb on + strandat 2142.128 kb on - strandat 2142.137 kb on + strandat 2142.170 kb on + strandat 2142.199 kb on + strand, within MPMX20_02048at 2142.207 kb on - strand, within MPMX20_02048at 2142.244 kb on + strand, within MPMX20_02048at 2142.244 kb on + strand, within MPMX20_02048at 2142.252 kb on - strand, within MPMX20_02048at 2142.257 kb on + strand, within MPMX20_02048at 2142.263 kb on + strand, within MPMX20_02048at 2142.446 kb on - strand, within MPMX20_02048at 2142.446 kb on - strand, within MPMX20_02048at 2142.491 kb on - strand, within MPMX20_02048at 2142.511 kb on + strand, within MPMX20_02048at 2142.643 kb on - strand, within MPMX20_02048at 2142.680 kb on - strand, within MPMX20_02048at 2142.716 kb on + strand, within MPMX20_02048at 2142.749 kb on + strand, within MPMX20_02048at 2142.769 kb on - strand, within MPMX20_02048at 2142.841 kb on - strand, within MPMX20_02048at 2142.971 kb on + strand, within MPMX20_02048

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
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2,139,981 + +0.7
2,139,986 - +0.5
2,140,039 - MPMX20_02046 0.11 -1.5
2,140,250 - MPMX20_02046 0.35 +0.6
2,140,345 - MPMX20_02046 0.46 +0.3
2,140,385 + MPMX20_02046 0.50 -1.4
2,140,442 + MPMX20_02046 0.57 -0.3
2,140,450 - MPMX20_02046 0.57 -0.6
2,140,450 - MPMX20_02046 0.57 -0.1
2,140,512 + MPMX20_02046 0.65 +1.3
2,140,512 + MPMX20_02046 0.65 +1.8
2,140,520 - MPMX20_02046 0.65 -0.2
2,140,523 + MPMX20_02046 0.66 +2.5
2,140,568 + MPMX20_02046 0.71 +0.5
2,140,576 - MPMX20_02046 0.72 +0.7
2,140,578 - MPMX20_02046 0.72 +0.1
2,140,631 + MPMX20_02046 0.78 +0.2
2,140,631 + MPMX20_02046 0.78 -1.1
2,140,639 - MPMX20_02046 0.79 +1.7
2,140,639 - MPMX20_02046 0.79 +0.2
2,140,639 - MPMX20_02046 0.79 +1.3
2,140,639 - MPMX20_02046 0.79 -0.8
2,140,669 - MPMX20_02046 0.82 -2.1
2,140,698 + MPMX20_02046 0.86 -1.0
2,140,760 + +0.0
2,140,795 + -0.6
2,140,813 - +0.5
2,140,852 - -0.7
2,140,893 + -1.7
2,140,897 + -1.5
2,140,944 + +2.9
2,141,042 + MPMX20_02047 0.11 -0.5
2,141,042 + MPMX20_02047 0.11 -0.9
2,141,042 + MPMX20_02047 0.11 -0.6
2,141,050 - MPMX20_02047 0.12 +1.2
2,141,050 - MPMX20_02047 0.12 -0.9
2,141,050 - MPMX20_02047 0.12 +0.9
2,141,055 - MPMX20_02047 0.13 -1.1
2,141,098 + MPMX20_02047 0.17 +0.2
2,141,104 + MPMX20_02047 0.17 -1.6
2,141,104 + MPMX20_02047 0.17 -1.4
2,141,104 + MPMX20_02047 0.17 +0.8
2,141,106 - MPMX20_02047 0.17 -1.0
2,141,106 - MPMX20_02047 0.17 +1.8
2,141,112 - MPMX20_02047 0.18 +1.2
2,141,161 - MPMX20_02047 0.23 -0.5
2,141,253 + MPMX20_02047 0.31 -0.0
2,141,261 - MPMX20_02047 0.32 -0.4
2,141,261 - MPMX20_02047 0.32 -0.3
2,141,261 - MPMX20_02047 0.32 -0.6
2,141,261 - MPMX20_02047 0.32 +0.4
2,141,261 - MPMX20_02047 0.32 +0.9
2,141,279 + MPMX20_02047 0.34 +3.3
2,141,279 + MPMX20_02047 0.34 -0.0
2,141,286 - MPMX20_02047 0.34 +0.3
2,141,293 + MPMX20_02047 0.35 -0.3
2,141,302 + MPMX20_02047 0.36 +1.5
2,141,302 + MPMX20_02047 0.36 -1.0
2,141,302 + MPMX20_02047 0.36 +1.9
2,141,358 - MPMX20_02047 0.41 +0.2
2,141,421 + MPMX20_02047 0.47 +0.3
2,141,439 + MPMX20_02047 0.49 +1.3
2,141,447 - MPMX20_02047 0.50 -0.9
2,141,447 - MPMX20_02047 0.50 -0.2
2,141,457 + MPMX20_02047 0.51 -1.5
2,141,471 - MPMX20_02047 0.52 -0.0
2,141,473 + MPMX20_02047 0.52 +1.6
2,141,473 + MPMX20_02047 0.52 +0.7
2,141,485 + MPMX20_02047 0.53 -1.2
2,141,487 + MPMX20_02047 0.54 +2.8
2,141,493 - MPMX20_02047 0.54 -0.8
2,141,495 - MPMX20_02047 0.54 +0.1
2,141,497 + MPMX20_02047 0.54 +0.5
2,141,497 + MPMX20_02047 0.54 +1.0
2,141,497 + MPMX20_02047 0.54 -1.2
2,141,504 + MPMX20_02047 0.55 +0.4
2,141,505 - MPMX20_02047 0.55 -0.2
2,141,505 - MPMX20_02047 0.55 +4.1
2,141,505 - MPMX20_02047 0.55 -0.9
2,141,505 - MPMX20_02047 0.55 -1.1
2,141,505 - MPMX20_02047 0.55 +0.8
2,141,505 - MPMX20_02047 0.55 -0.2
2,141,505 - MPMX20_02047 0.55 -1.1
2,141,505 - MPMX20_02047 0.55 +0.2
2,141,505 - MPMX20_02047 0.55 +1.1
2,141,505 - MPMX20_02047 0.55 -1.3
2,141,505 - MPMX20_02047 0.55 -1.0
2,141,509 + MPMX20_02047 0.56 +1.3
2,141,509 + MPMX20_02047 0.56 -1.6
2,141,512 - MPMX20_02047 0.56 -0.7
2,141,532 + MPMX20_02047 0.58 -0.7
2,141,542 + MPMX20_02047 0.59 +0.7
2,141,543 + MPMX20_02047 0.59 -0.2
2,141,551 - MPMX20_02047 0.60 +1.6
2,141,553 + MPMX20_02047 0.60 +0.2
2,141,589 + MPMX20_02047 0.63 +0.3
2,141,596 + MPMX20_02047 0.64 +0.3
2,141,599 + MPMX20_02047 0.64 +1.4
2,141,618 - MPMX20_02047 0.66 -3.6
2,141,656 + MPMX20_02047 0.70 -1.5
2,141,696 - MPMX20_02047 0.73 +1.9
2,141,705 - MPMX20_02047 0.74 +0.9
2,141,710 - MPMX20_02047 0.75 +0.1
2,141,720 - MPMX20_02047 0.76 +0.2
2,141,746 + MPMX20_02047 0.78 -1.7
2,141,892 + +1.3
2,141,895 - +0.3
2,141,897 + -0.4
2,141,908 + -0.2
2,141,950 + -0.2
2,141,950 + -1.9
2,141,958 - -0.4
2,141,958 - -0.2
2,142,075 - -0.1
2,142,075 - +0.4
2,142,085 + -0.7
2,142,085 + -1.9
2,142,128 - -0.8
2,142,137 + -1.9
2,142,170 + +1.0
2,142,199 + MPMX20_02048 0.10 +1.1
2,142,207 - MPMX20_02048 0.11 +1.3
2,142,244 + MPMX20_02048 0.13 -0.0
2,142,244 + MPMX20_02048 0.13 -1.0
2,142,252 - MPMX20_02048 0.14 +0.6
2,142,257 + MPMX20_02048 0.14 -0.3
2,142,263 + MPMX20_02048 0.15 +0.5
2,142,446 - MPMX20_02048 0.27 +0.7
2,142,446 - MPMX20_02048 0.27 +0.4
2,142,491 - MPMX20_02048 0.30 -0.3
2,142,511 + MPMX20_02048 0.31 +4.1
2,142,643 - MPMX20_02048 0.40 +1.1
2,142,680 - MPMX20_02048 0.42 -0.9
2,142,716 + MPMX20_02048 0.45 +1.6
2,142,749 + MPMX20_02048 0.47 -0.6
2,142,769 - MPMX20_02048 0.48 +0.7
2,142,841 - MPMX20_02048 0.53 -0.1
2,142,971 + MPMX20_02048 0.61 +2.3

Or see this region's nucleotide sequence