Experiment: M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01302 and MPMX20_01303 are separated by 120 nucleotides MPMX20_01303 and MPMX20_01304 overlap by 1 nucleotides MPMX20_01304 and MPMX20_01305 overlap by 1 nucleotides
MPMX20_01302: MPMX20_01302 - Pyrimidine-specific ribonucleoside hydrolase RihA, at 1,363,551 to 1,364,495
_01302
MPMX20_01303: MPMX20_01303 - Glutamine transport ATP-binding protein GlnQ, at 1,364,616 to 1,365,341
_01303
MPMX20_01304: MPMX20_01304 - Glutamate/aspartate import permease protein GltK, at 1,365,341 to 1,366,015
_01304
MPMX20_01305: MPMX20_01305 - Glutamate/aspartate import permease protein GltJ, at 1,366,015 to 1,366,755
_01305
Position (kb)
1364
1365
1366 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 1363.633 kb on + strand at 1363.633 kb on + strand at 1363.633 kb on + strand at 1363.641 kb on - strand at 1363.641 kb on - strand at 1363.655 kb on + strand, within MPMX20_01302 at 1363.665 kb on + strand, within MPMX20_01302 at 1363.675 kb on + strand, within MPMX20_01302 at 1363.675 kb on + strand, within MPMX20_01302 at 1363.675 kb on + strand, within MPMX20_01302 at 1363.683 kb on - strand, within MPMX20_01302 at 1363.683 kb on - strand, within MPMX20_01302 at 1363.719 kb on + strand, within MPMX20_01302 at 1363.727 kb on - strand, within MPMX20_01302 at 1363.752 kb on - strand, within MPMX20_01302 at 1363.776 kb on + strand, within MPMX20_01302 at 1363.789 kb on - strand, within MPMX20_01302 at 1363.811 kb on - strand, within MPMX20_01302 at 1363.933 kb on - strand, within MPMX20_01302 at 1364.152 kb on - strand, within MPMX20_01302 at 1364.188 kb on + strand, within MPMX20_01302 at 1364.196 kb on - strand, within MPMX20_01302 at 1364.222 kb on + strand, within MPMX20_01302 at 1364.222 kb on + strand, within MPMX20_01302 at 1364.230 kb on - strand, within MPMX20_01302 at 1364.232 kb on + strand, within MPMX20_01302 at 1364.296 kb on - strand, within MPMX20_01302 at 1364.312 kb on + strand, within MPMX20_01302 at 1364.312 kb on + strand, within MPMX20_01302 at 1364.337 kb on - strand, within MPMX20_01302 at 1364.341 kb on - strand, within MPMX20_01302 at 1364.358 kb on - strand, within MPMX20_01302 at 1364.358 kb on - strand, within MPMX20_01302 at 1364.409 kb on - strand at 1364.414 kb on + strand at 1364.414 kb on + strand at 1364.429 kb on + strand at 1364.435 kb on + strand at 1364.484 kb on + strand at 1364.487 kb on - strand at 1364.488 kb on - strand at 1364.499 kb on - strand at 1364.617 kb on - strand at 1364.617 kb on - strand at 1364.632 kb on - strand at 1364.860 kb on + strand, within MPMX20_01303 at 1364.879 kb on + strand, within MPMX20_01303 at 1364.881 kb on + strand, within MPMX20_01303 at 1364.881 kb on + strand, within MPMX20_01303 at 1364.887 kb on - strand, within MPMX20_01303 at 1365.029 kb on + strand, within MPMX20_01303 at 1365.044 kb on + strand, within MPMX20_01303 at 1365.196 kb on - strand, within MPMX20_01303 at 1365.205 kb on + strand, within MPMX20_01303 at 1365.382 kb on + strand at 1365.537 kb on + strand, within MPMX20_01304 at 1365.587 kb on - strand, within MPMX20_01304 at 1365.627 kb on + strand, within MPMX20_01304 at 1365.627 kb on + strand, within MPMX20_01304 at 1365.635 kb on - strand, within MPMX20_01304 at 1365.635 kb on - strand, within MPMX20_01304 at 1365.635 kb on - strand, within MPMX20_01304 at 1365.635 kb on - strand, within MPMX20_01304 at 1365.698 kb on - strand, within MPMX20_01304 at 1365.720 kb on - strand, within MPMX20_01304 at 1365.795 kb on - strand, within MPMX20_01304 at 1365.800 kb on - strand, within MPMX20_01304 at 1365.809 kb on + strand, within MPMX20_01304 at 1365.836 kb on + strand, within MPMX20_01304 at 1365.914 kb on + strand, within MPMX20_01304 at 1366.071 kb on - strand at 1366.103 kb on - strand, within MPMX20_01305 at 1366.265 kb on + strand, within MPMX20_01305 at 1366.275 kb on + strand, within MPMX20_01305 at 1366.300 kb on - strand, within MPMX20_01305 at 1366.323 kb on - strand, within MPMX20_01305
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,363,633 + +0.8 1,363,633 + +0.4 1,363,633 + -1.2 1,363,641 - +0.5 1,363,641 - -0.3 1,363,655 + MPMX20_01302 0.11 -1.3 1,363,665 + MPMX20_01302 0.12 +0.7 1,363,675 + MPMX20_01302 0.13 +3.9 1,363,675 + MPMX20_01302 0.13 -1.2 1,363,675 + MPMX20_01302 0.13 +0.4 1,363,683 - MPMX20_01302 0.14 +0.8 1,363,683 - MPMX20_01302 0.14 -0.7 1,363,719 + MPMX20_01302 0.18 -0.9 1,363,727 - MPMX20_01302 0.19 +1.0 1,363,752 - MPMX20_01302 0.21 -0.3 1,363,776 + MPMX20_01302 0.24 -0.0 1,363,789 - MPMX20_01302 0.25 -0.3 1,363,811 - MPMX20_01302 0.28 -0.5 1,363,933 - MPMX20_01302 0.40 -0.5 1,364,152 - MPMX20_01302 0.64 +0.7 1,364,188 + MPMX20_01302 0.67 +1.0 1,364,196 - MPMX20_01302 0.68 -0.7 1,364,222 + MPMX20_01302 0.71 -0.6 1,364,222 + MPMX20_01302 0.71 -0.2 1,364,230 - MPMX20_01302 0.72 -0.6 1,364,232 + MPMX20_01302 0.72 -1.2 1,364,296 - MPMX20_01302 0.79 -3.0 1,364,312 + MPMX20_01302 0.81 +2.8 1,364,312 + MPMX20_01302 0.81 +0.9 1,364,337 - MPMX20_01302 0.83 -0.1 1,364,341 - MPMX20_01302 0.84 +1.3 1,364,358 - MPMX20_01302 0.85 +0.3 1,364,358 - MPMX20_01302 0.85 -1.2 1,364,409 - -0.5 1,364,414 + -0.9 1,364,414 + -0.0 1,364,429 + -0.6 1,364,435 + +0.7 1,364,484 + +0.3 1,364,487 - +0.6 1,364,488 - -1.2 1,364,499 - -0.2 1,364,617 - -1.4 1,364,617 - +2.2 1,364,632 - -1.3 1,364,860 + MPMX20_01303 0.34 -0.6 1,364,879 + MPMX20_01303 0.36 +0.0 1,364,881 + MPMX20_01303 0.37 +0.7 1,364,881 + MPMX20_01303 0.37 +0.3 1,364,887 - MPMX20_01303 0.37 +3.8 1,365,029 + MPMX20_01303 0.57 +0.5 1,365,044 + MPMX20_01303 0.59 -0.2 1,365,196 - MPMX20_01303 0.80 -1.2 1,365,205 + MPMX20_01303 0.81 +0.2 1,365,382 + +6.2 1,365,537 + MPMX20_01304 0.29 -1.8 1,365,587 - MPMX20_01304 0.36 -1.2 1,365,627 + MPMX20_01304 0.42 -1.5 1,365,627 + MPMX20_01304 0.42 -1.7 1,365,635 - MPMX20_01304 0.44 -0.2 1,365,635 - MPMX20_01304 0.44 -0.5 1,365,635 - MPMX20_01304 0.44 -0.5 1,365,635 - MPMX20_01304 0.44 -2.5 1,365,698 - MPMX20_01304 0.53 +1.2 1,365,720 - MPMX20_01304 0.56 +1.3 1,365,795 - MPMX20_01304 0.67 +0.7 1,365,800 - MPMX20_01304 0.68 -0.5 1,365,809 + MPMX20_01304 0.69 +1.0 1,365,836 + MPMX20_01304 0.73 -1.3 1,365,914 + MPMX20_01304 0.85 +1.1 1,366,071 - +1.3 1,366,103 - MPMX20_01305 0.12 +0.1 1,366,265 + MPMX20_01305 0.34 -0.3 1,366,275 + MPMX20_01305 0.35 +0.7 1,366,300 - MPMX20_01305 0.38 -0.9 1,366,323 - MPMX20_01305 0.42 +1.1
Or see this region's nucleotide sequence