Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01303

Experiment: M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01302 and MPMX20_01303 are separated by 120 nucleotidesMPMX20_01303 and MPMX20_01304 overlap by 1 nucleotidesMPMX20_01304 and MPMX20_01305 overlap by 1 nucleotides MPMX20_01302: MPMX20_01302 - Pyrimidine-specific ribonucleoside hydrolase RihA, at 1,363,551 to 1,364,495 _01302 MPMX20_01303: MPMX20_01303 - Glutamine transport ATP-binding protein GlnQ, at 1,364,616 to 1,365,341 _01303 MPMX20_01304: MPMX20_01304 - Glutamate/aspartate import permease protein GltK, at 1,365,341 to 1,366,015 _01304 MPMX20_01305: MPMX20_01305 - Glutamate/aspartate import permease protein GltJ, at 1,366,015 to 1,366,755 _01305 Position (kb) 1364 1365 1366Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1363.633 kb on + strandat 1363.633 kb on + strandat 1363.633 kb on + strandat 1363.641 kb on - strandat 1363.641 kb on - strandat 1363.655 kb on + strand, within MPMX20_01302at 1363.665 kb on + strand, within MPMX20_01302at 1363.675 kb on + strand, within MPMX20_01302at 1363.675 kb on + strand, within MPMX20_01302at 1363.675 kb on + strand, within MPMX20_01302at 1363.683 kb on - strand, within MPMX20_01302at 1363.683 kb on - strand, within MPMX20_01302at 1363.719 kb on + strand, within MPMX20_01302at 1363.727 kb on - strand, within MPMX20_01302at 1363.752 kb on - strand, within MPMX20_01302at 1363.776 kb on + strand, within MPMX20_01302at 1363.789 kb on - strand, within MPMX20_01302at 1363.811 kb on - strand, within MPMX20_01302at 1363.933 kb on - strand, within MPMX20_01302at 1364.152 kb on - strand, within MPMX20_01302at 1364.188 kb on + strand, within MPMX20_01302at 1364.196 kb on - strand, within MPMX20_01302at 1364.222 kb on + strand, within MPMX20_01302at 1364.222 kb on + strand, within MPMX20_01302at 1364.230 kb on - strand, within MPMX20_01302at 1364.232 kb on + strand, within MPMX20_01302at 1364.296 kb on - strand, within MPMX20_01302at 1364.312 kb on + strand, within MPMX20_01302at 1364.312 kb on + strand, within MPMX20_01302at 1364.337 kb on - strand, within MPMX20_01302at 1364.341 kb on - strand, within MPMX20_01302at 1364.358 kb on - strand, within MPMX20_01302at 1364.358 kb on - strand, within MPMX20_01302at 1364.409 kb on - strandat 1364.414 kb on + strandat 1364.414 kb on + strandat 1364.429 kb on + strandat 1364.435 kb on + strandat 1364.484 kb on + strandat 1364.487 kb on - strandat 1364.488 kb on - strandat 1364.499 kb on - strandat 1364.617 kb on - strandat 1364.617 kb on - strandat 1364.632 kb on - strandat 1364.860 kb on + strand, within MPMX20_01303at 1364.879 kb on + strand, within MPMX20_01303at 1364.881 kb on + strand, within MPMX20_01303at 1364.881 kb on + strand, within MPMX20_01303at 1364.887 kb on - strand, within MPMX20_01303at 1365.029 kb on + strand, within MPMX20_01303at 1365.044 kb on + strand, within MPMX20_01303at 1365.196 kb on - strand, within MPMX20_01303at 1365.205 kb on + strand, within MPMX20_01303at 1365.382 kb on + strandat 1365.537 kb on + strand, within MPMX20_01304at 1365.587 kb on - strand, within MPMX20_01304at 1365.627 kb on + strand, within MPMX20_01304at 1365.627 kb on + strand, within MPMX20_01304at 1365.635 kb on - strand, within MPMX20_01304at 1365.635 kb on - strand, within MPMX20_01304at 1365.635 kb on - strand, within MPMX20_01304at 1365.635 kb on - strand, within MPMX20_01304at 1365.698 kb on - strand, within MPMX20_01304at 1365.720 kb on - strand, within MPMX20_01304at 1365.795 kb on - strand, within MPMX20_01304at 1365.800 kb on - strand, within MPMX20_01304at 1365.809 kb on + strand, within MPMX20_01304at 1365.836 kb on + strand, within MPMX20_01304at 1365.914 kb on + strand, within MPMX20_01304at 1366.071 kb on - strandat 1366.103 kb on - strand, within MPMX20_01305at 1366.265 kb on + strand, within MPMX20_01305at 1366.275 kb on + strand, within MPMX20_01305at 1366.300 kb on - strand, within MPMX20_01305at 1366.323 kb on - strand, within MPMX20_01305

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,363,633 + +0.8
1,363,633 + +0.4
1,363,633 + -1.2
1,363,641 - +0.5
1,363,641 - -0.3
1,363,655 + MPMX20_01302 0.11 -1.3
1,363,665 + MPMX20_01302 0.12 +0.7
1,363,675 + MPMX20_01302 0.13 +3.9
1,363,675 + MPMX20_01302 0.13 -1.2
1,363,675 + MPMX20_01302 0.13 +0.4
1,363,683 - MPMX20_01302 0.14 +0.8
1,363,683 - MPMX20_01302 0.14 -0.7
1,363,719 + MPMX20_01302 0.18 -0.9
1,363,727 - MPMX20_01302 0.19 +1.0
1,363,752 - MPMX20_01302 0.21 -0.3
1,363,776 + MPMX20_01302 0.24 -0.0
1,363,789 - MPMX20_01302 0.25 -0.3
1,363,811 - MPMX20_01302 0.28 -0.5
1,363,933 - MPMX20_01302 0.40 -0.5
1,364,152 - MPMX20_01302 0.64 +0.7
1,364,188 + MPMX20_01302 0.67 +1.0
1,364,196 - MPMX20_01302 0.68 -0.7
1,364,222 + MPMX20_01302 0.71 -0.6
1,364,222 + MPMX20_01302 0.71 -0.2
1,364,230 - MPMX20_01302 0.72 -0.6
1,364,232 + MPMX20_01302 0.72 -1.2
1,364,296 - MPMX20_01302 0.79 -3.0
1,364,312 + MPMX20_01302 0.81 +2.8
1,364,312 + MPMX20_01302 0.81 +0.9
1,364,337 - MPMX20_01302 0.83 -0.1
1,364,341 - MPMX20_01302 0.84 +1.3
1,364,358 - MPMX20_01302 0.85 +0.3
1,364,358 - MPMX20_01302 0.85 -1.2
1,364,409 - -0.5
1,364,414 + -0.9
1,364,414 + -0.0
1,364,429 + -0.6
1,364,435 + +0.7
1,364,484 + +0.3
1,364,487 - +0.6
1,364,488 - -1.2
1,364,499 - -0.2
1,364,617 - -1.4
1,364,617 - +2.2
1,364,632 - -1.3
1,364,860 + MPMX20_01303 0.34 -0.6
1,364,879 + MPMX20_01303 0.36 +0.0
1,364,881 + MPMX20_01303 0.37 +0.7
1,364,881 + MPMX20_01303 0.37 +0.3
1,364,887 - MPMX20_01303 0.37 +3.8
1,365,029 + MPMX20_01303 0.57 +0.5
1,365,044 + MPMX20_01303 0.59 -0.2
1,365,196 - MPMX20_01303 0.80 -1.2
1,365,205 + MPMX20_01303 0.81 +0.2
1,365,382 + +6.2
1,365,537 + MPMX20_01304 0.29 -1.8
1,365,587 - MPMX20_01304 0.36 -1.2
1,365,627 + MPMX20_01304 0.42 -1.5
1,365,627 + MPMX20_01304 0.42 -1.7
1,365,635 - MPMX20_01304 0.44 -0.2
1,365,635 - MPMX20_01304 0.44 -0.5
1,365,635 - MPMX20_01304 0.44 -0.5
1,365,635 - MPMX20_01304 0.44 -2.5
1,365,698 - MPMX20_01304 0.53 +1.2
1,365,720 - MPMX20_01304 0.56 +1.3
1,365,795 - MPMX20_01304 0.67 +0.7
1,365,800 - MPMX20_01304 0.68 -0.5
1,365,809 + MPMX20_01304 0.69 +1.0
1,365,836 + MPMX20_01304 0.73 -1.3
1,365,914 + MPMX20_01304 0.85 +1.1
1,366,071 - +1.3
1,366,103 - MPMX20_01305 0.12 +0.1
1,366,265 + MPMX20_01305 0.34 -0.3
1,366,275 + MPMX20_01305 0.35 +0.7
1,366,300 - MPMX20_01305 0.38 -0.9
1,366,323 - MPMX20_01305 0.42 +1.1

Or see this region's nucleotide sequence