Experiment: 1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03656 and MPMX20_03657 are separated by 77 nucleotides MPMX20_03657 and MPMX20_03658 are separated by 15 nucleotides
MPMX20_03656: MPMX20_03656 - Glycerate 2-kinase, at 3,849,755 to 3,850,900
_03656
MPMX20_03657: MPMX20_03657 - Glucarate dehydratase, at 3,850,978 to 3,852,315
_03657
MPMX20_03658: MPMX20_03658 - Glucarate dehydratase-related protein, at 3,852,331 to 3,853,671
_03658
Position (kb)
3850
3851
3852
3853 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3850.106 kb on + strand, within MPMX20_03656 at 3850.132 kb on + strand, within MPMX20_03656 at 3850.133 kb on - strand, within MPMX20_03656 at 3850.133 kb on - strand, within MPMX20_03656 at 3850.145 kb on + strand, within MPMX20_03656 at 3850.200 kb on + strand, within MPMX20_03656 at 3850.206 kb on + strand, within MPMX20_03656 at 3850.240 kb on - strand, within MPMX20_03656 at 3850.240 kb on - strand, within MPMX20_03656 at 3850.282 kb on - strand, within MPMX20_03656 at 3850.307 kb on + strand, within MPMX20_03656 at 3850.312 kb on + strand, within MPMX20_03656 at 3850.320 kb on - strand, within MPMX20_03656 at 3850.321 kb on + strand, within MPMX20_03656 at 3850.329 kb on - strand, within MPMX20_03656 at 3850.356 kb on + strand, within MPMX20_03656 at 3850.356 kb on + strand, within MPMX20_03656 at 3850.356 kb on + strand, within MPMX20_03656 at 3850.375 kb on + strand, within MPMX20_03656 at 3850.375 kb on + strand, within MPMX20_03656 at 3850.375 kb on + strand, within MPMX20_03656 at 3850.388 kb on - strand, within MPMX20_03656 at 3850.393 kb on - strand, within MPMX20_03656 at 3850.412 kb on - strand, within MPMX20_03656 at 3850.414 kb on + strand, within MPMX20_03656 at 3850.414 kb on + strand, within MPMX20_03656 at 3850.414 kb on + strand, within MPMX20_03656 at 3850.422 kb on - strand, within MPMX20_03656 at 3850.422 kb on - strand, within MPMX20_03656 at 3850.444 kb on + strand, within MPMX20_03656 at 3850.454 kb on - strand, within MPMX20_03656 at 3850.527 kb on - strand, within MPMX20_03656 at 3850.564 kb on + strand, within MPMX20_03656 at 3850.572 kb on - strand, within MPMX20_03656 at 3850.609 kb on + strand, within MPMX20_03656 at 3850.609 kb on + strand, within MPMX20_03656 at 3850.617 kb on - strand, within MPMX20_03656 at 3850.617 kb on - strand, within MPMX20_03656 at 3850.617 kb on - strand, within MPMX20_03656 at 3850.617 kb on - strand, within MPMX20_03656 at 3850.649 kb on + strand, within MPMX20_03656 at 3850.651 kb on + strand, within MPMX20_03656 at 3850.708 kb on - strand, within MPMX20_03656 at 3850.720 kb on - strand, within MPMX20_03656 at 3850.742 kb on + strand, within MPMX20_03656 at 3850.770 kb on - strand, within MPMX20_03656 at 3850.869 kb on - strand at 3850.915 kb on - strand at 3850.927 kb on - strand at 3850.927 kb on - strand at 3850.931 kb on + strand at 3850.931 kb on + strand at 3850.939 kb on - strand at 3850.939 kb on - strand at 3850.940 kb on - strand at 3851.021 kb on + strand at 3851.105 kb on + strand at 3851.105 kb on + strand at 3851.127 kb on + strand, within MPMX20_03657 at 3851.138 kb on + strand, within MPMX20_03657 at 3851.146 kb on - strand, within MPMX20_03657 at 3851.218 kb on + strand, within MPMX20_03657 at 3851.244 kb on + strand, within MPMX20_03657 at 3851.252 kb on - strand, within MPMX20_03657 at 3851.309 kb on + strand, within MPMX20_03657 at 3851.309 kb on + strand, within MPMX20_03657 at 3851.317 kb on - strand, within MPMX20_03657 at 3851.322 kb on - strand, within MPMX20_03657 at 3851.335 kb on + strand, within MPMX20_03657 at 3851.335 kb on + strand, within MPMX20_03657 at 3851.343 kb on - strand, within MPMX20_03657 at 3851.343 kb on - strand, within MPMX20_03657 at 3851.350 kb on + strand, within MPMX20_03657 at 3851.356 kb on + strand, within MPMX20_03657 at 3851.356 kb on + strand, within MPMX20_03657 at 3851.364 kb on - strand, within MPMX20_03657 at 3851.364 kb on - strand, within MPMX20_03657 at 3851.374 kb on - strand, within MPMX20_03657 at 3851.374 kb on - strand, within MPMX20_03657 at 3851.404 kb on + strand, within MPMX20_03657 at 3851.424 kb on - strand, within MPMX20_03657 at 3851.424 kb on - strand, within MPMX20_03657 at 3851.464 kb on + strand, within MPMX20_03657 at 3851.520 kb on + strand, within MPMX20_03657 at 3851.520 kb on + strand, within MPMX20_03657 at 3851.528 kb on - strand, within MPMX20_03657 at 3851.528 kb on - strand, within MPMX20_03657 at 3851.593 kb on - strand, within MPMX20_03657 at 3851.606 kb on + strand, within MPMX20_03657 at 3851.703 kb on + strand, within MPMX20_03657 at 3851.703 kb on + strand, within MPMX20_03657 at 3851.738 kb on + strand, within MPMX20_03657 at 3851.760 kb on + strand, within MPMX20_03657 at 3851.904 kb on - strand, within MPMX20_03657 at 3851.932 kb on + strand, within MPMX20_03657 at 3851.956 kb on - strand, within MPMX20_03657 at 3851.993 kb on - strand, within MPMX20_03657 at 3852.003 kb on + strand, within MPMX20_03657 at 3852.062 kb on + strand, within MPMX20_03657 at 3852.062 kb on + strand, within MPMX20_03657 at 3852.070 kb on - strand, within MPMX20_03657 at 3852.114 kb on - strand, within MPMX20_03657 at 3852.154 kb on + strand, within MPMX20_03657 at 3852.182 kb on - strand at 3852.230 kb on + strand at 3852.279 kb on + strand at 3852.308 kb on + strand at 3852.340 kb on + strand at 3852.471 kb on + strand, within MPMX20_03658 at 3852.483 kb on + strand, within MPMX20_03658 at 3852.595 kb on + strand, within MPMX20_03658 at 3852.603 kb on - strand, within MPMX20_03658 at 3852.665 kb on + strand, within MPMX20_03658 at 3852.665 kb on + strand, within MPMX20_03658 at 3852.665 kb on + strand, within MPMX20_03658 at 3852.665 kb on + strand, within MPMX20_03658 at 3852.665 kb on + strand, within MPMX20_03658 at 3852.665 kb on + strand, within MPMX20_03658 at 3852.673 kb on - strand, within MPMX20_03658 at 3852.673 kb on - strand, within MPMX20_03658 at 3852.673 kb on - strand, within MPMX20_03658 at 3852.686 kb on + strand, within MPMX20_03658 at 3852.686 kb on + strand, within MPMX20_03658 at 3852.694 kb on - strand, within MPMX20_03658 at 3852.694 kb on - strand, within MPMX20_03658 at 3852.694 kb on - strand, within MPMX20_03658 at 3852.720 kb on - strand, within MPMX20_03658 at 3852.804 kb on + strand, within MPMX20_03658 at 3852.904 kb on + strand, within MPMX20_03658 at 3852.912 kb on - strand, within MPMX20_03658 at 3852.935 kb on + strand, within MPMX20_03658 at 3852.954 kb on + strand, within MPMX20_03658 at 3852.954 kb on + strand, within MPMX20_03658 at 3852.954 kb on + strand, within MPMX20_03658 at 3852.962 kb on + strand, within MPMX20_03658 at 3853.019 kb on + strand, within MPMX20_03658 at 3853.146 kb on + strand, within MPMX20_03658 at 3853.146 kb on + strand, within MPMX20_03658 at 3853.146 kb on + strand, within MPMX20_03658 at 3853.154 kb on - strand, within MPMX20_03658 at 3853.246 kb on - strand, within MPMX20_03658 at 3853.270 kb on - strand, within MPMX20_03658 at 3853.272 kb on - strand, within MPMX20_03658 at 3853.295 kb on + strand, within MPMX20_03658
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,850,106 + MPMX20_03656 0.31 +0.3 3,850,132 + MPMX20_03656 0.33 -1.1 3,850,133 - MPMX20_03656 0.33 -0.3 3,850,133 - MPMX20_03656 0.33 -1.1 3,850,145 + MPMX20_03656 0.34 +0.7 3,850,200 + MPMX20_03656 0.39 +0.8 3,850,206 + MPMX20_03656 0.39 -1.6 3,850,240 - MPMX20_03656 0.42 +0.5 3,850,240 - MPMX20_03656 0.42 -0.3 3,850,282 - MPMX20_03656 0.46 -0.5 3,850,307 + MPMX20_03656 0.48 -0.7 3,850,312 + MPMX20_03656 0.49 -1.1 3,850,320 - MPMX20_03656 0.49 -0.3 3,850,321 + MPMX20_03656 0.49 -1.8 3,850,329 - MPMX20_03656 0.50 +0.5 3,850,356 + MPMX20_03656 0.52 -1.7 3,850,356 + MPMX20_03656 0.52 +0.5 3,850,356 + MPMX20_03656 0.52 +0.8 3,850,375 + MPMX20_03656 0.54 -0.9 3,850,375 + MPMX20_03656 0.54 +0.5 3,850,375 + MPMX20_03656 0.54 -1.0 3,850,388 - MPMX20_03656 0.55 +1.1 3,850,393 - MPMX20_03656 0.56 -1.6 3,850,412 - MPMX20_03656 0.57 -0.4 3,850,414 + MPMX20_03656 0.58 -1.1 3,850,414 + MPMX20_03656 0.58 -0.3 3,850,414 + MPMX20_03656 0.58 -0.3 3,850,422 - MPMX20_03656 0.58 -0.5 3,850,422 - MPMX20_03656 0.58 -0.4 3,850,444 + MPMX20_03656 0.60 -1.1 3,850,454 - MPMX20_03656 0.61 -0.3 3,850,527 - MPMX20_03656 0.67 -1.0 3,850,564 + MPMX20_03656 0.71 -1.9 3,850,572 - MPMX20_03656 0.71 -1.5 3,850,609 + MPMX20_03656 0.75 -0.7 3,850,609 + MPMX20_03656 0.75 -0.7 3,850,617 - MPMX20_03656 0.75 +0.1 3,850,617 - MPMX20_03656 0.75 +0.8 3,850,617 - MPMX20_03656 0.75 +0.2 3,850,617 - MPMX20_03656 0.75 +0.5 3,850,649 + MPMX20_03656 0.78 +1.0 3,850,651 + MPMX20_03656 0.78 +0.7 3,850,708 - MPMX20_03656 0.83 +0.1 3,850,720 - MPMX20_03656 0.84 -1.6 3,850,742 + MPMX20_03656 0.86 +0.0 3,850,770 - MPMX20_03656 0.89 -3.5 3,850,869 - -0.5 3,850,915 - -0.4 3,850,927 - +0.1 3,850,927 - +0.5 3,850,931 + +1.6 3,850,931 + +1.5 3,850,939 - -0.7 3,850,939 - -0.1 3,850,940 - -1.1 3,851,021 + -1.2 3,851,105 + +0.1 3,851,105 + -0.9 3,851,127 + MPMX20_03657 0.11 -1.0 3,851,138 + MPMX20_03657 0.12 -0.5 3,851,146 - MPMX20_03657 0.13 -0.9 3,851,218 + MPMX20_03657 0.18 +0.5 3,851,244 + MPMX20_03657 0.20 +0.1 3,851,252 - MPMX20_03657 0.20 +1.2 3,851,309 + MPMX20_03657 0.25 +0.4 3,851,309 + MPMX20_03657 0.25 -1.3 3,851,317 - MPMX20_03657 0.25 -1.1 3,851,322 - MPMX20_03657 0.26 -0.3 3,851,335 + MPMX20_03657 0.27 -0.4 3,851,335 + MPMX20_03657 0.27 -0.7 3,851,343 - MPMX20_03657 0.27 +2.1 3,851,343 - MPMX20_03657 0.27 -0.0 3,851,350 + MPMX20_03657 0.28 -0.4 3,851,356 + MPMX20_03657 0.28 +1.1 3,851,356 + MPMX20_03657 0.28 -1.1 3,851,364 - MPMX20_03657 0.29 +0.1 3,851,364 - MPMX20_03657 0.29 -1.9 3,851,374 - MPMX20_03657 0.30 -1.3 3,851,374 - MPMX20_03657 0.30 +2.1 3,851,404 + MPMX20_03657 0.32 +1.2 3,851,424 - MPMX20_03657 0.33 +0.5 3,851,424 - MPMX20_03657 0.33 -0.6 3,851,464 + MPMX20_03657 0.36 +0.6 3,851,520 + MPMX20_03657 0.41 -0.2 3,851,520 + MPMX20_03657 0.41 -0.2 3,851,528 - MPMX20_03657 0.41 +0.5 3,851,528 - MPMX20_03657 0.41 -0.7 3,851,593 - MPMX20_03657 0.46 +2.1 3,851,606 + MPMX20_03657 0.47 +0.1 3,851,703 + MPMX20_03657 0.54 +1.0 3,851,703 + MPMX20_03657 0.54 +0.1 3,851,738 + MPMX20_03657 0.57 +2.1 3,851,760 + MPMX20_03657 0.58 +0.4 3,851,904 - MPMX20_03657 0.69 +0.2 3,851,932 + MPMX20_03657 0.71 +1.1 3,851,956 - MPMX20_03657 0.73 +0.5 3,851,993 - MPMX20_03657 0.76 +0.3 3,852,003 + MPMX20_03657 0.77 -0.0 3,852,062 + MPMX20_03657 0.81 -0.6 3,852,062 + MPMX20_03657 0.81 +1.6 3,852,070 - MPMX20_03657 0.82 -3.1 3,852,114 - MPMX20_03657 0.85 -2.0 3,852,154 + MPMX20_03657 0.88 -1.3 3,852,182 - -1.8 3,852,230 + -0.8 3,852,279 + -0.5 3,852,308 + -1.6 3,852,340 + -2.9 3,852,471 + MPMX20_03658 0.10 +2.5 3,852,483 + MPMX20_03658 0.11 +3.1 3,852,595 + MPMX20_03658 0.20 +1.1 3,852,603 - MPMX20_03658 0.20 -0.7 3,852,665 + MPMX20_03658 0.25 +0.9 3,852,665 + MPMX20_03658 0.25 -0.2 3,852,665 + MPMX20_03658 0.25 -1.7 3,852,665 + MPMX20_03658 0.25 -0.9 3,852,665 + MPMX20_03658 0.25 -1.5 3,852,665 + MPMX20_03658 0.25 +0.8 3,852,673 - MPMX20_03658 0.26 -3.7 3,852,673 - MPMX20_03658 0.26 -0.4 3,852,673 - MPMX20_03658 0.26 -0.8 3,852,686 + MPMX20_03658 0.26 +0.1 3,852,686 + MPMX20_03658 0.26 -1.1 3,852,694 - MPMX20_03658 0.27 +0.8 3,852,694 - MPMX20_03658 0.27 +1.2 3,852,694 - MPMX20_03658 0.27 +1.4 3,852,720 - MPMX20_03658 0.29 -0.5 3,852,804 + MPMX20_03658 0.35 -0.7 3,852,904 + MPMX20_03658 0.43 +0.5 3,852,912 - MPMX20_03658 0.43 +0.6 3,852,935 + MPMX20_03658 0.45 -0.0 3,852,954 + MPMX20_03658 0.46 -0.3 3,852,954 + MPMX20_03658 0.46 -0.3 3,852,954 + MPMX20_03658 0.46 +0.7 3,852,962 + MPMX20_03658 0.47 -1.9 3,853,019 + MPMX20_03658 0.51 -0.5 3,853,146 + MPMX20_03658 0.61 +1.7 3,853,146 + MPMX20_03658 0.61 +1.1 3,853,146 + MPMX20_03658 0.61 +0.4 3,853,154 - MPMX20_03658 0.61 +0.5 3,853,246 - MPMX20_03658 0.68 +0.6 3,853,270 - MPMX20_03658 0.70 -1.0 3,853,272 - MPMX20_03658 0.70 -0.5 3,853,295 + MPMX20_03658 0.72 -0.6
Or see this region's nucleotide sequence