Experiment: 1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01944 and MPMX20_01945 are separated by 9 nucleotides MPMX20_01945 and MPMX20_01946 overlap by 26 nucleotides MPMX20_01946 and MPMX20_01947 overlap by 4 nucleotides
MPMX20_01944: MPMX20_01944 - FeS cluster assembly protein SufB, at 2,039,626 to 2,041,116
_01944
MPMX20_01945: MPMX20_01945 - putative ATP-dependent transporter SufC, at 2,041,126 to 2,041,872
_01945
MPMX20_01946: MPMX20_01946 - FeS cluster assembly protein SufD, at 2,041,847 to 2,043,118
_01946
MPMX20_01947: MPMX20_01947 - Cysteine desulfurase, at 2,043,115 to 2,044,335
_01947
Position (kb)
2041
2042
2043
2044 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2040.874 kb on + strand, within MPMX20_01944 at 2040.918 kb on + strand, within MPMX20_01944 at 2040.926 kb on - strand, within MPMX20_01944 at 2040.935 kb on - strand, within MPMX20_01944 at 2040.963 kb on + strand, within MPMX20_01944 at 2040.973 kb on - strand at 2041.001 kb on - strand at 2041.036 kb on - strand at 2041.036 kb on - strand at 2041.088 kb on + strand at 2041.089 kb on + strand at 2041.094 kb on + strand at 2041.094 kb on + strand at 2041.183 kb on - strand at 2041.212 kb on - strand, within MPMX20_01945 at 2041.354 kb on + strand, within MPMX20_01945 at 2041.362 kb on - strand, within MPMX20_01945 at 2041.394 kb on + strand, within MPMX20_01945 at 2041.457 kb on + strand, within MPMX20_01945 at 2041.473 kb on - strand, within MPMX20_01945 at 2041.534 kb on + strand, within MPMX20_01945 at 2041.534 kb on + strand, within MPMX20_01945 at 2041.534 kb on + strand, within MPMX20_01945 at 2041.613 kb on + strand, within MPMX20_01945 at 2041.613 kb on + strand, within MPMX20_01945 at 2041.613 kb on + strand, within MPMX20_01945 at 2041.616 kb on - strand, within MPMX20_01945 at 2041.663 kb on + strand, within MPMX20_01945 at 2041.734 kb on + strand, within MPMX20_01945 at 2041.757 kb on - strand, within MPMX20_01945 at 2041.821 kb on + strand at 2041.821 kb on + strand at 2041.821 kb on + strand at 2041.829 kb on - strand at 2041.842 kb on + strand at 2041.842 kb on + strand at 2041.842 kb on + strand at 2041.844 kb on + strand at 2041.850 kb on - strand at 2041.866 kb on + strand at 2041.866 kb on + strand at 2041.874 kb on - strand at 2041.909 kb on + strand at 2042.025 kb on - strand, within MPMX20_01946 at 2042.050 kb on + strand, within MPMX20_01946 at 2042.077 kb on + strand, within MPMX20_01946 at 2042.135 kb on - strand, within MPMX20_01946 at 2042.135 kb on - strand, within MPMX20_01946 at 2042.135 kb on - strand, within MPMX20_01946 at 2042.135 kb on - strand, within MPMX20_01946 at 2042.135 kb on - strand, within MPMX20_01946 at 2042.135 kb on - strand, within MPMX20_01946 at 2042.145 kb on + strand, within MPMX20_01946 at 2042.147 kb on + strand, within MPMX20_01946 at 2042.155 kb on - strand, within MPMX20_01946 at 2042.185 kb on - strand, within MPMX20_01946 at 2042.210 kb on - strand, within MPMX20_01946 at 2042.220 kb on - strand, within MPMX20_01946 at 2042.231 kb on - strand, within MPMX20_01946 at 2042.282 kb on - strand, within MPMX20_01946 at 2042.341 kb on + strand, within MPMX20_01946 at 2042.349 kb on - strand, within MPMX20_01946 at 2042.367 kb on + strand, within MPMX20_01946 at 2042.394 kb on - strand, within MPMX20_01946 at 2042.407 kb on + strand, within MPMX20_01946 at 2042.548 kb on + strand, within MPMX20_01946 at 2042.595 kb on + strand, within MPMX20_01946 at 2042.600 kb on + strand, within MPMX20_01946 at 2042.603 kb on - strand, within MPMX20_01946 at 2042.608 kb on - strand, within MPMX20_01946 at 2042.608 kb on - strand, within MPMX20_01946 at 2042.626 kb on + strand, within MPMX20_01946 at 2042.626 kb on + strand, within MPMX20_01946 at 2042.626 kb on + strand, within MPMX20_01946 at 2042.626 kb on + strand, within MPMX20_01946 at 2042.626 kb on + strand, within MPMX20_01946 at 2042.626 kb on + strand, within MPMX20_01946 at 2042.627 kb on - strand, within MPMX20_01946 at 2042.627 kb on - strand, within MPMX20_01946 at 2042.634 kb on - strand, within MPMX20_01946 at 2042.648 kb on - strand, within MPMX20_01946 at 2042.648 kb on - strand, within MPMX20_01946 at 2042.661 kb on + strand, within MPMX20_01946 at 2042.679 kb on + strand, within MPMX20_01946 at 2042.701 kb on + strand, within MPMX20_01946 at 2042.701 kb on + strand, within MPMX20_01946 at 2042.701 kb on + strand, within MPMX20_01946 at 2042.706 kb on + strand, within MPMX20_01946 at 2042.709 kb on - strand, within MPMX20_01946 at 2042.709 kb on - strand, within MPMX20_01946 at 2042.709 kb on - strand, within MPMX20_01946 at 2042.709 kb on - strand, within MPMX20_01946 at 2042.714 kb on - strand, within MPMX20_01946 at 2042.716 kb on + strand, within MPMX20_01946 at 2042.724 kb on - strand, within MPMX20_01946 at 2042.736 kb on + strand, within MPMX20_01946 at 2042.736 kb on + strand, within MPMX20_01946 at 2042.794 kb on + strand, within MPMX20_01946 at 2042.917 kb on + strand, within MPMX20_01946 at 2043.022 kb on - strand at 2043.084 kb on + strand at 2043.094 kb on + strand at 2043.154 kb on + strand at 2043.154 kb on + strand at 2043.154 kb on + strand at 2043.162 kb on - strand at 2043.176 kb on + strand at 2043.183 kb on - strand at 2043.183 kb on - strand at 2043.189 kb on - strand at 2043.190 kb on + strand at 2043.190 kb on + strand at 2043.190 kb on + strand at 2043.190 kb on + strand at 2043.190 kb on + strand at 2043.190 kb on + strand at 2043.190 kb on + strand at 2043.190 kb on + strand at 2043.198 kb on - strand at 2043.198 kb on - strand at 2043.198 kb on - strand at 2043.198 kb on - strand at 2043.274 kb on - strand, within MPMX20_01947 at 2043.287 kb on + strand, within MPMX20_01947 at 2043.287 kb on + strand, within MPMX20_01947 at 2043.287 kb on + strand, within MPMX20_01947 at 2043.287 kb on + strand, within MPMX20_01947 at 2043.295 kb on - strand, within MPMX20_01947 at 2043.295 kb on - strand, within MPMX20_01947 at 2043.295 kb on - strand, within MPMX20_01947 at 2043.295 kb on - strand, within MPMX20_01947 at 2043.295 kb on - strand, within MPMX20_01947 at 2043.307 kb on - strand, within MPMX20_01947 at 2043.381 kb on - strand, within MPMX20_01947 at 2043.404 kb on + strand, within MPMX20_01947 at 2043.405 kb on + strand, within MPMX20_01947 at 2043.441 kb on + strand, within MPMX20_01947 at 2043.453 kb on + strand, within MPMX20_01947 at 2043.459 kb on - strand, within MPMX20_01947 at 2043.708 kb on + strand, within MPMX20_01947 at 2043.727 kb on + strand, within MPMX20_01947 at 2043.727 kb on + strand, within MPMX20_01947 at 2043.735 kb on - strand, within MPMX20_01947 at 2043.742 kb on + strand, within MPMX20_01947 at 2043.791 kb on + strand, within MPMX20_01947 at 2043.809 kb on + strand, within MPMX20_01947 at 2043.863 kb on - strand, within MPMX20_01947 at 2044.026 kb on - strand, within MPMX20_01947 at 2044.079 kb on + strand, within MPMX20_01947 at 2044.106 kb on + strand, within MPMX20_01947
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 2,040,874 + MPMX20_01944 0.84 +0.1 2,040,918 + MPMX20_01944 0.87 -1.3 2,040,926 - MPMX20_01944 0.87 +0.9 2,040,935 - MPMX20_01944 0.88 +0.1 2,040,963 + MPMX20_01944 0.90 -0.3 2,040,973 - -0.7 2,041,001 - +0.6 2,041,036 - +0.7 2,041,036 - -2.8 2,041,088 + -0.5 2,041,089 + -0.3 2,041,094 + -2.1 2,041,094 + -0.9 2,041,183 - -0.9 2,041,212 - MPMX20_01945 0.12 +0.4 2,041,354 + MPMX20_01945 0.31 +1.5 2,041,362 - MPMX20_01945 0.32 +0.6 2,041,394 + MPMX20_01945 0.36 -1.1 2,041,457 + MPMX20_01945 0.44 -0.9 2,041,473 - MPMX20_01945 0.46 +1.0 2,041,534 + MPMX20_01945 0.55 +0.3 2,041,534 + MPMX20_01945 0.55 +0.9 2,041,534 + MPMX20_01945 0.55 +0.8 2,041,613 + MPMX20_01945 0.65 -1.7 2,041,613 + MPMX20_01945 0.65 -0.1 2,041,613 + MPMX20_01945 0.65 +0.2 2,041,616 - MPMX20_01945 0.66 -0.9 2,041,663 + MPMX20_01945 0.72 +0.9 2,041,734 + MPMX20_01945 0.81 -0.9 2,041,757 - MPMX20_01945 0.84 -1.1 2,041,821 + +0.4 2,041,821 + -0.2 2,041,821 + -1.1 2,041,829 - +0.1 2,041,842 + -0.1 2,041,842 + -2.6 2,041,842 + +0.6 2,041,844 + +0.5 2,041,850 - +0.8 2,041,866 + -0.1 2,041,866 + -0.9 2,041,874 - +0.6 2,041,909 + -1.0 2,042,025 - MPMX20_01946 0.14 -0.1 2,042,050 + MPMX20_01946 0.16 -0.4 2,042,077 + MPMX20_01946 0.18 -0.1 2,042,135 - MPMX20_01946 0.23 -1.2 2,042,135 - MPMX20_01946 0.23 +0.7 2,042,135 - MPMX20_01946 0.23 +0.3 2,042,135 - MPMX20_01946 0.23 -1.3 2,042,135 - MPMX20_01946 0.23 -1.5 2,042,135 - MPMX20_01946 0.23 -0.1 2,042,145 + MPMX20_01946 0.23 +0.9 2,042,147 + MPMX20_01946 0.24 +0.0 2,042,155 - MPMX20_01946 0.24 -0.7 2,042,185 - MPMX20_01946 0.27 +1.1 2,042,210 - MPMX20_01946 0.29 -0.4 2,042,220 - MPMX20_01946 0.29 -0.1 2,042,231 - MPMX20_01946 0.30 -0.5 2,042,282 - MPMX20_01946 0.34 -0.5 2,042,341 + MPMX20_01946 0.39 -0.3 2,042,349 - MPMX20_01946 0.39 +1.9 2,042,367 + MPMX20_01946 0.41 +0.1 2,042,394 - MPMX20_01946 0.43 -1.3 2,042,407 + MPMX20_01946 0.44 -0.4 2,042,548 + MPMX20_01946 0.55 -1.2 2,042,595 + MPMX20_01946 0.59 -2.3 2,042,600 + MPMX20_01946 0.59 -0.2 2,042,603 - MPMX20_01946 0.59 +0.5 2,042,608 - MPMX20_01946 0.60 +1.3 2,042,608 - MPMX20_01946 0.60 -1.9 2,042,626 + MPMX20_01946 0.61 -0.4 2,042,626 + MPMX20_01946 0.61 +0.1 2,042,626 + MPMX20_01946 0.61 -0.3 2,042,626 + MPMX20_01946 0.61 -0.7 2,042,626 + MPMX20_01946 0.61 -0.5 2,042,626 + MPMX20_01946 0.61 -0.4 2,042,627 - MPMX20_01946 0.61 +0.1 2,042,627 - MPMX20_01946 0.61 +0.1 2,042,634 - MPMX20_01946 0.62 +0.8 2,042,648 - MPMX20_01946 0.63 +1.3 2,042,648 - MPMX20_01946 0.63 +1.1 2,042,661 + MPMX20_01946 0.64 +1.1 2,042,679 + MPMX20_01946 0.65 -0.5 2,042,701 + MPMX20_01946 0.67 +0.5 2,042,701 + MPMX20_01946 0.67 -0.3 2,042,701 + MPMX20_01946 0.67 -0.8 2,042,706 + MPMX20_01946 0.68 -0.6 2,042,709 - MPMX20_01946 0.68 -0.3 2,042,709 - MPMX20_01946 0.68 +0.6 2,042,709 - MPMX20_01946 0.68 -1.5 2,042,709 - MPMX20_01946 0.68 +0.0 2,042,714 - MPMX20_01946 0.68 +2.1 2,042,716 + MPMX20_01946 0.68 +2.1 2,042,724 - MPMX20_01946 0.69 +1.2 2,042,736 + MPMX20_01946 0.70 +1.9 2,042,736 + MPMX20_01946 0.70 -0.2 2,042,794 + MPMX20_01946 0.74 -0.5 2,042,917 + MPMX20_01946 0.84 -2.0 2,043,022 - +1.3 2,043,084 + -1.8 2,043,094 + -0.1 2,043,154 + -0.2 2,043,154 + -1.3 2,043,154 + -0.0 2,043,162 - +0.5 2,043,176 + -1.1 2,043,183 - +0.7 2,043,183 - -1.3 2,043,189 - -0.6 2,043,190 + -0.0 2,043,190 + -0.5 2,043,190 + +0.0 2,043,190 + +1.7 2,043,190 + -1.0 2,043,190 + +1.1 2,043,190 + +0.3 2,043,190 + +0.1 2,043,198 - -0.7 2,043,198 - -1.9 2,043,198 - -0.5 2,043,198 - +0.1 2,043,274 - MPMX20_01947 0.13 -0.2 2,043,287 + MPMX20_01947 0.14 -1.0 2,043,287 + MPMX20_01947 0.14 -1.8 2,043,287 + MPMX20_01947 0.14 +0.0 2,043,287 + MPMX20_01947 0.14 +1.1 2,043,295 - MPMX20_01947 0.15 -2.0 2,043,295 - MPMX20_01947 0.15 -3.7 2,043,295 - MPMX20_01947 0.15 +2.1 2,043,295 - MPMX20_01947 0.15 +1.1 2,043,295 - MPMX20_01947 0.15 +0.4 2,043,307 - MPMX20_01947 0.16 +1.5 2,043,381 - MPMX20_01947 0.22 +0.2 2,043,404 + MPMX20_01947 0.24 +0.5 2,043,405 + MPMX20_01947 0.24 +0.5 2,043,441 + MPMX20_01947 0.27 -0.4 2,043,453 + MPMX20_01947 0.28 -2.0 2,043,459 - MPMX20_01947 0.28 -0.5 2,043,708 + MPMX20_01947 0.49 -0.2 2,043,727 + MPMX20_01947 0.50 +2.1 2,043,727 + MPMX20_01947 0.50 -1.5 2,043,735 - MPMX20_01947 0.51 -1.0 2,043,742 + MPMX20_01947 0.51 -1.8 2,043,791 + MPMX20_01947 0.55 -0.1 2,043,809 + MPMX20_01947 0.57 -1.6 2,043,863 - MPMX20_01947 0.61 +1.1 2,044,026 - MPMX20_01947 0.75 -0.8 2,044,079 + MPMX20_01947 0.79 -0.6 2,044,106 + MPMX20_01947 0.81 +0.0
Or see this region's nucleotide sequence