Experiment: 1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01555 and MPMX20_01556 are separated by 211 nucleotides MPMX20_01556 and MPMX20_01557 are separated by 10 nucleotides MPMX20_01557 and MPMX20_01558 are separated by 1 nucleotides
MPMX20_01555: MPMX20_01555 - Serine--tRNA ligase, at 1,631,566 to 1,632,858
_01555
MPMX20_01556: MPMX20_01556 - Dimethyl sulfoxide reductase DmsA, at 1,633,070 to 1,635,511
_01556
MPMX20_01557: MPMX20_01557 - Anaerobic dimethyl sulfoxide reductase chain B, at 1,635,522 to 1,636,139
_01557
MPMX20_01558: MPMX20_01558 - Anaerobic dimethyl sulfoxide reductase chain C, at 1,636,141 to 1,637,004
_01558
Position (kb)
1633
1634
1635
1636 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1632.913 kb on - strand at 1632.945 kb on - strand at 1633.062 kb on - strand at 1633.068 kb on - strand at 1633.091 kb on + strand at 1633.101 kb on - strand at 1633.149 kb on + strand at 1633.170 kb on + strand at 1633.180 kb on + strand at 1633.211 kb on + strand at 1633.212 kb on - strand at 1633.216 kb on + strand at 1633.216 kb on + strand at 1633.216 kb on + strand at 1633.216 kb on + strand at 1633.224 kb on - strand at 1633.224 kb on - strand at 1633.264 kb on + strand at 1633.264 kb on - strand at 1633.285 kb on + strand at 1633.293 kb on - strand at 1633.342 kb on + strand, within MPMX20_01556 at 1633.361 kb on + strand, within MPMX20_01556 at 1633.361 kb on + strand, within MPMX20_01556 at 1633.363 kb on - strand, within MPMX20_01556 at 1633.363 kb on - strand, within MPMX20_01556 at 1633.364 kb on - strand, within MPMX20_01556 at 1633.369 kb on - strand, within MPMX20_01556 at 1633.369 kb on - strand, within MPMX20_01556 at 1633.386 kb on + strand, within MPMX20_01556 at 1633.443 kb on - strand, within MPMX20_01556 at 1633.470 kb on - strand, within MPMX20_01556 at 1633.481 kb on + strand, within MPMX20_01556 at 1633.501 kb on - strand, within MPMX20_01556 at 1633.671 kb on - strand, within MPMX20_01556 at 1633.700 kb on + strand, within MPMX20_01556 at 1633.700 kb on + strand, within MPMX20_01556 at 1633.700 kb on + strand, within MPMX20_01556 at 1633.700 kb on + strand, within MPMX20_01556 at 1633.708 kb on - strand, within MPMX20_01556 at 1633.708 kb on - strand, within MPMX20_01556 at 1633.713 kb on - strand, within MPMX20_01556 at 1633.730 kb on + strand, within MPMX20_01556 at 1633.738 kb on - strand, within MPMX20_01556 at 1633.738 kb on - strand, within MPMX20_01556 at 1633.759 kb on + strand, within MPMX20_01556 at 1633.767 kb on - strand, within MPMX20_01556 at 1633.767 kb on - strand, within MPMX20_01556 at 1633.818 kb on + strand, within MPMX20_01556 at 1633.825 kb on + strand, within MPMX20_01556 at 1633.826 kb on - strand, within MPMX20_01556 at 1633.831 kb on - strand, within MPMX20_01556 at 1633.882 kb on + strand, within MPMX20_01556 at 1633.906 kb on - strand, within MPMX20_01556 at 1633.914 kb on - strand, within MPMX20_01556 at 1633.914 kb on - strand, within MPMX20_01556 at 1633.947 kb on - strand, within MPMX20_01556 at 1633.966 kb on + strand, within MPMX20_01556 at 1633.979 kb on - strand, within MPMX20_01556 at 1634.074 kb on + strand, within MPMX20_01556 at 1634.082 kb on - strand, within MPMX20_01556 at 1634.216 kb on - strand, within MPMX20_01556 at 1634.216 kb on - strand, within MPMX20_01556 at 1634.218 kb on + strand, within MPMX20_01556 at 1634.218 kb on + strand, within MPMX20_01556 at 1634.226 kb on - strand, within MPMX20_01556 at 1634.226 kb on - strand, within MPMX20_01556 at 1634.226 kb on - strand, within MPMX20_01556 at 1634.226 kb on - strand, within MPMX20_01556 at 1634.345 kb on - strand, within MPMX20_01556 at 1634.381 kb on + strand, within MPMX20_01556 at 1634.449 kb on + strand, within MPMX20_01556 at 1634.457 kb on - strand, within MPMX20_01556 at 1634.457 kb on - strand, within MPMX20_01556 at 1634.645 kb on + strand, within MPMX20_01556 at 1634.650 kb on + strand, within MPMX20_01556 at 1634.658 kb on - strand, within MPMX20_01556 at 1634.661 kb on + strand, within MPMX20_01556 at 1634.661 kb on + strand, within MPMX20_01556 at 1634.669 kb on - strand, within MPMX20_01556 at 1634.775 kb on + strand, within MPMX20_01556 at 1634.775 kb on + strand, within MPMX20_01556 at 1634.783 kb on - strand, within MPMX20_01556 at 1634.837 kb on + strand, within MPMX20_01556 at 1634.927 kb on - strand, within MPMX20_01556 at 1634.956 kb on + strand, within MPMX20_01556 at 1634.964 kb on - strand, within MPMX20_01556 at 1634.995 kb on + strand, within MPMX20_01556 at 1634.995 kb on + strand, within MPMX20_01556 at 1635.177 kb on - strand, within MPMX20_01556 at 1635.191 kb on + strand, within MPMX20_01556 at 1635.191 kb on + strand, within MPMX20_01556 at 1635.199 kb on - strand, within MPMX20_01556 at 1635.199 kb on - strand, within MPMX20_01556 at 1635.199 kb on - strand, within MPMX20_01556 at 1635.219 kb on - strand, within MPMX20_01556 at 1635.305 kb on - strand at 1635.330 kb on - strand at 1635.333 kb on + strand at 1635.370 kb on + strand at 1635.405 kb on + strand at 1635.460 kb on + strand at 1635.513 kb on - strand at 1635.513 kb on - strand at 1636.100 kb on + strand at 1636.141 kb on - strand at 1636.202 kb on - strand at 1636.216 kb on - strand at 1636.233 kb on + strand, within MPMX20_01558 at 1636.233 kb on + strand, within MPMX20_01558 at 1636.241 kb on - strand, within MPMX20_01558 at 1636.273 kb on + strand, within MPMX20_01558 at 1636.275 kb on - strand, within MPMX20_01558 at 1636.283 kb on + strand, within MPMX20_01558 at 1636.291 kb on - strand, within MPMX20_01558 at 1636.297 kb on - strand, within MPMX20_01558 at 1636.327 kb on + strand, within MPMX20_01558 at 1636.364 kb on + strand, within MPMX20_01558 at 1636.381 kb on - strand, within MPMX20_01558 at 1636.384 kb on + strand, within MPMX20_01558 at 1636.440 kb on + strand, within MPMX20_01558 at 1636.443 kb on - strand, within MPMX20_01558 at 1636.477 kb on + strand, within MPMX20_01558 at 1636.485 kb on - strand, within MPMX20_01558 at 1636.487 kb on + strand, within MPMX20_01558 at 1636.495 kb on - strand, within MPMX20_01558 at 1636.495 kb on - strand, within MPMX20_01558
Per-strain Table
Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,632,913 - +0.6 1,632,945 - +0.1 1,633,062 - -1.5 1,633,068 - +0.2 1,633,091 + +0.8 1,633,101 - +1.1 1,633,149 + -0.9 1,633,170 + +1.5 1,633,180 + -0.2 1,633,211 + -0.8 1,633,212 - +2.1 1,633,216 + +1.2 1,633,216 + +0.9 1,633,216 + -0.9 1,633,216 + +1.8 1,633,224 - -0.4 1,633,224 - +1.7 1,633,264 + +1.2 1,633,264 - -0.0 1,633,285 + +0.9 1,633,293 - -0.7 1,633,342 + MPMX20_01556 0.11 -0.7 1,633,361 + MPMX20_01556 0.12 -1.7 1,633,361 + MPMX20_01556 0.12 +0.1 1,633,363 - MPMX20_01556 0.12 -0.6 1,633,363 - MPMX20_01556 0.12 +2.3 1,633,364 - MPMX20_01556 0.12 -0.7 1,633,369 - MPMX20_01556 0.12 -0.1 1,633,369 - MPMX20_01556 0.12 +0.5 1,633,386 + MPMX20_01556 0.13 -1.0 1,633,443 - MPMX20_01556 0.15 -0.1 1,633,470 - MPMX20_01556 0.16 -1.0 1,633,481 + MPMX20_01556 0.17 +0.1 1,633,501 - MPMX20_01556 0.18 -1.3 1,633,671 - MPMX20_01556 0.25 -1.7 1,633,700 + MPMX20_01556 0.26 -1.3 1,633,700 + MPMX20_01556 0.26 -0.0 1,633,700 + MPMX20_01556 0.26 -0.1 1,633,700 + MPMX20_01556 0.26 -1.2 1,633,708 - MPMX20_01556 0.26 +0.8 1,633,708 - MPMX20_01556 0.26 -1.2 1,633,713 - MPMX20_01556 0.26 +0.3 1,633,730 + MPMX20_01556 0.27 -0.7 1,633,738 - MPMX20_01556 0.27 +0.2 1,633,738 - MPMX20_01556 0.27 -1.1 1,633,759 + MPMX20_01556 0.28 -1.4 1,633,767 - MPMX20_01556 0.29 -0.2 1,633,767 - MPMX20_01556 0.29 +0.5 1,633,818 + MPMX20_01556 0.31 -0.9 1,633,825 + MPMX20_01556 0.31 +0.2 1,633,826 - MPMX20_01556 0.31 -1.4 1,633,831 - MPMX20_01556 0.31 -0.3 1,633,882 + MPMX20_01556 0.33 +1.1 1,633,906 - MPMX20_01556 0.34 -1.3 1,633,914 - MPMX20_01556 0.35 -0.5 1,633,914 - MPMX20_01556 0.35 -0.6 1,633,947 - MPMX20_01556 0.36 -1.0 1,633,966 + MPMX20_01556 0.37 -0.2 1,633,979 - MPMX20_01556 0.37 -0.2 1,634,074 + MPMX20_01556 0.41 +0.2 1,634,082 - MPMX20_01556 0.41 -1.6 1,634,216 - MPMX20_01556 0.47 -0.1 1,634,216 - MPMX20_01556 0.47 -0.9 1,634,218 + MPMX20_01556 0.47 -0.7 1,634,218 + MPMX20_01556 0.47 -0.6 1,634,226 - MPMX20_01556 0.47 -0.2 1,634,226 - MPMX20_01556 0.47 +1.4 1,634,226 - MPMX20_01556 0.47 -0.1 1,634,226 - MPMX20_01556 0.47 -1.4 1,634,345 - MPMX20_01556 0.52 -0.6 1,634,381 + MPMX20_01556 0.54 -1.3 1,634,449 + MPMX20_01556 0.56 -1.5 1,634,457 - MPMX20_01556 0.57 -0.4 1,634,457 - MPMX20_01556 0.57 -0.6 1,634,645 + MPMX20_01556 0.64 -2.0 1,634,650 + MPMX20_01556 0.65 -0.7 1,634,658 - MPMX20_01556 0.65 +1.2 1,634,661 + MPMX20_01556 0.65 +0.5 1,634,661 + MPMX20_01556 0.65 +1.1 1,634,669 - MPMX20_01556 0.65 +2.1 1,634,775 + MPMX20_01556 0.70 -0.7 1,634,775 + MPMX20_01556 0.70 +0.1 1,634,783 - MPMX20_01556 0.70 -3.1 1,634,837 + MPMX20_01556 0.72 +0.5 1,634,927 - MPMX20_01556 0.76 -0.9 1,634,956 + MPMX20_01556 0.77 +1.3 1,634,964 - MPMX20_01556 0.78 +1.6 1,634,995 + MPMX20_01556 0.79 -0.7 1,634,995 + MPMX20_01556 0.79 +2.1 1,635,177 - MPMX20_01556 0.86 -0.2 1,635,191 + MPMX20_01556 0.87 +0.3 1,635,191 + MPMX20_01556 0.87 -0.4 1,635,199 - MPMX20_01556 0.87 -0.7 1,635,199 - MPMX20_01556 0.87 +0.3 1,635,199 - MPMX20_01556 0.87 -0.5 1,635,219 - MPMX20_01556 0.88 -2.2 1,635,305 - +1.2 1,635,330 - +0.5 1,635,333 + +5.2 1,635,370 + -0.4 1,635,405 + -0.5 1,635,460 + -1.5 1,635,513 - +0.9 1,635,513 - -0.5 1,636,100 + -0.5 1,636,141 - +2.1 1,636,202 - -1.0 1,636,216 - -0.5 1,636,233 + MPMX20_01558 0.11 +0.0 1,636,233 + MPMX20_01558 0.11 +1.3 1,636,241 - MPMX20_01558 0.12 +0.9 1,636,273 + MPMX20_01558 0.15 +1.6 1,636,275 - MPMX20_01558 0.16 +0.3 1,636,283 + MPMX20_01558 0.16 -0.1 1,636,291 - MPMX20_01558 0.17 +2.5 1,636,297 - MPMX20_01558 0.18 -0.2 1,636,327 + MPMX20_01558 0.22 -2.0 1,636,364 + MPMX20_01558 0.26 +0.4 1,636,381 - MPMX20_01558 0.28 +0.0 1,636,384 + MPMX20_01558 0.28 +0.8 1,636,440 + MPMX20_01558 0.35 -0.3 1,636,443 - MPMX20_01558 0.35 +0.7 1,636,477 + MPMX20_01558 0.39 -0.3 1,636,485 - MPMX20_01558 0.40 +2.8 1,636,487 + MPMX20_01558 0.40 +1.1 1,636,495 - MPMX20_01558 0.41 +0.3 1,636,495 - MPMX20_01558 0.41 +1.7
Or see this region's nucleotide sequence