Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01556

Experiment: 1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01555 and MPMX20_01556 are separated by 211 nucleotidesMPMX20_01556 and MPMX20_01557 are separated by 10 nucleotidesMPMX20_01557 and MPMX20_01558 are separated by 1 nucleotides MPMX20_01555: MPMX20_01555 - Serine--tRNA ligase, at 1,631,566 to 1,632,858 _01555 MPMX20_01556: MPMX20_01556 - Dimethyl sulfoxide reductase DmsA, at 1,633,070 to 1,635,511 _01556 MPMX20_01557: MPMX20_01557 - Anaerobic dimethyl sulfoxide reductase chain B, at 1,635,522 to 1,636,139 _01557 MPMX20_01558: MPMX20_01558 - Anaerobic dimethyl sulfoxide reductase chain C, at 1,636,141 to 1,637,004 _01558 Position (kb) 1633 1634 1635 1636Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 1632.913 kb on - strandat 1632.945 kb on - strandat 1633.062 kb on - strandat 1633.068 kb on - strandat 1633.091 kb on + strandat 1633.101 kb on - strandat 1633.149 kb on + strandat 1633.170 kb on + strandat 1633.180 kb on + strandat 1633.211 kb on + strandat 1633.212 kb on - strandat 1633.216 kb on + strandat 1633.216 kb on + strandat 1633.216 kb on + strandat 1633.216 kb on + strandat 1633.224 kb on - strandat 1633.224 kb on - strandat 1633.264 kb on + strandat 1633.264 kb on - strandat 1633.285 kb on + strandat 1633.293 kb on - strandat 1633.342 kb on + strand, within MPMX20_01556at 1633.361 kb on + strand, within MPMX20_01556at 1633.361 kb on + strand, within MPMX20_01556at 1633.363 kb on - strand, within MPMX20_01556at 1633.363 kb on - strand, within MPMX20_01556at 1633.364 kb on - strand, within MPMX20_01556at 1633.369 kb on - strand, within MPMX20_01556at 1633.369 kb on - strand, within MPMX20_01556at 1633.386 kb on + strand, within MPMX20_01556at 1633.443 kb on - strand, within MPMX20_01556at 1633.470 kb on - strand, within MPMX20_01556at 1633.481 kb on + strand, within MPMX20_01556at 1633.501 kb on - strand, within MPMX20_01556at 1633.671 kb on - strand, within MPMX20_01556at 1633.700 kb on + strand, within MPMX20_01556at 1633.700 kb on + strand, within MPMX20_01556at 1633.700 kb on + strand, within MPMX20_01556at 1633.700 kb on + strand, within MPMX20_01556at 1633.708 kb on - strand, within MPMX20_01556at 1633.708 kb on - strand, within MPMX20_01556at 1633.713 kb on - strand, within MPMX20_01556at 1633.730 kb on + strand, within MPMX20_01556at 1633.738 kb on - strand, within MPMX20_01556at 1633.738 kb on - strand, within MPMX20_01556at 1633.759 kb on + strand, within MPMX20_01556at 1633.767 kb on - strand, within MPMX20_01556at 1633.767 kb on - strand, within MPMX20_01556at 1633.818 kb on + strand, within MPMX20_01556at 1633.825 kb on + strand, within MPMX20_01556at 1633.826 kb on - strand, within MPMX20_01556at 1633.831 kb on - strand, within MPMX20_01556at 1633.882 kb on + strand, within MPMX20_01556at 1633.906 kb on - strand, within MPMX20_01556at 1633.914 kb on - strand, within MPMX20_01556at 1633.914 kb on - strand, within MPMX20_01556at 1633.947 kb on - strand, within MPMX20_01556at 1633.966 kb on + strand, within MPMX20_01556at 1633.979 kb on - strand, within MPMX20_01556at 1634.074 kb on + strand, within MPMX20_01556at 1634.082 kb on - strand, within MPMX20_01556at 1634.216 kb on - strand, within MPMX20_01556at 1634.216 kb on - strand, within MPMX20_01556at 1634.218 kb on + strand, within MPMX20_01556at 1634.218 kb on + strand, within MPMX20_01556at 1634.226 kb on - strand, within MPMX20_01556at 1634.226 kb on - strand, within MPMX20_01556at 1634.226 kb on - strand, within MPMX20_01556at 1634.226 kb on - strand, within MPMX20_01556at 1634.345 kb on - strand, within MPMX20_01556at 1634.381 kb on + strand, within MPMX20_01556at 1634.449 kb on + strand, within MPMX20_01556at 1634.457 kb on - strand, within MPMX20_01556at 1634.457 kb on - strand, within MPMX20_01556at 1634.645 kb on + strand, within MPMX20_01556at 1634.650 kb on + strand, within MPMX20_01556at 1634.658 kb on - strand, within MPMX20_01556at 1634.661 kb on + strand, within MPMX20_01556at 1634.661 kb on + strand, within MPMX20_01556at 1634.669 kb on - strand, within MPMX20_01556at 1634.775 kb on + strand, within MPMX20_01556at 1634.775 kb on + strand, within MPMX20_01556at 1634.783 kb on - strand, within MPMX20_01556at 1634.837 kb on + strand, within MPMX20_01556at 1634.927 kb on - strand, within MPMX20_01556at 1634.956 kb on + strand, within MPMX20_01556at 1634.964 kb on - strand, within MPMX20_01556at 1634.995 kb on + strand, within MPMX20_01556at 1634.995 kb on + strand, within MPMX20_01556at 1635.177 kb on - strand, within MPMX20_01556at 1635.191 kb on + strand, within MPMX20_01556at 1635.191 kb on + strand, within MPMX20_01556at 1635.199 kb on - strand, within MPMX20_01556at 1635.199 kb on - strand, within MPMX20_01556at 1635.199 kb on - strand, within MPMX20_01556at 1635.219 kb on - strand, within MPMX20_01556at 1635.305 kb on - strandat 1635.330 kb on - strandat 1635.333 kb on + strandat 1635.370 kb on + strandat 1635.405 kb on + strandat 1635.460 kb on + strandat 1635.513 kb on - strandat 1635.513 kb on - strandat 1636.100 kb on + strandat 1636.141 kb on - strandat 1636.202 kb on - strandat 1636.216 kb on - strandat 1636.233 kb on + strand, within MPMX20_01558at 1636.233 kb on + strand, within MPMX20_01558at 1636.241 kb on - strand, within MPMX20_01558at 1636.273 kb on + strand, within MPMX20_01558at 1636.275 kb on - strand, within MPMX20_01558at 1636.283 kb on + strand, within MPMX20_01558at 1636.291 kb on - strand, within MPMX20_01558at 1636.297 kb on - strand, within MPMX20_01558at 1636.327 kb on + strand, within MPMX20_01558at 1636.364 kb on + strand, within MPMX20_01558at 1636.381 kb on - strand, within MPMX20_01558at 1636.384 kb on + strand, within MPMX20_01558at 1636.440 kb on + strand, within MPMX20_01558at 1636.443 kb on - strand, within MPMX20_01558at 1636.477 kb on + strand, within MPMX20_01558at 1636.485 kb on - strand, within MPMX20_01558at 1636.487 kb on + strand, within MPMX20_01558at 1636.495 kb on - strand, within MPMX20_01558at 1636.495 kb on - strand, within MPMX20_01558

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Per-strain Table

Position Strand Gene LocusTag Fraction 1X LB plate, Mixed culture; Micromonospora sp. SAI_152 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
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1,632,913 - +0.6
1,632,945 - +0.1
1,633,062 - -1.5
1,633,068 - +0.2
1,633,091 + +0.8
1,633,101 - +1.1
1,633,149 + -0.9
1,633,170 + +1.5
1,633,180 + -0.2
1,633,211 + -0.8
1,633,212 - +2.1
1,633,216 + +1.2
1,633,216 + +0.9
1,633,216 + -0.9
1,633,216 + +1.8
1,633,224 - -0.4
1,633,224 - +1.7
1,633,264 + +1.2
1,633,264 - -0.0
1,633,285 + +0.9
1,633,293 - -0.7
1,633,342 + MPMX20_01556 0.11 -0.7
1,633,361 + MPMX20_01556 0.12 -1.7
1,633,361 + MPMX20_01556 0.12 +0.1
1,633,363 - MPMX20_01556 0.12 -0.6
1,633,363 - MPMX20_01556 0.12 +2.3
1,633,364 - MPMX20_01556 0.12 -0.7
1,633,369 - MPMX20_01556 0.12 -0.1
1,633,369 - MPMX20_01556 0.12 +0.5
1,633,386 + MPMX20_01556 0.13 -1.0
1,633,443 - MPMX20_01556 0.15 -0.1
1,633,470 - MPMX20_01556 0.16 -1.0
1,633,481 + MPMX20_01556 0.17 +0.1
1,633,501 - MPMX20_01556 0.18 -1.3
1,633,671 - MPMX20_01556 0.25 -1.7
1,633,700 + MPMX20_01556 0.26 -1.3
1,633,700 + MPMX20_01556 0.26 -0.0
1,633,700 + MPMX20_01556 0.26 -0.1
1,633,700 + MPMX20_01556 0.26 -1.2
1,633,708 - MPMX20_01556 0.26 +0.8
1,633,708 - MPMX20_01556 0.26 -1.2
1,633,713 - MPMX20_01556 0.26 +0.3
1,633,730 + MPMX20_01556 0.27 -0.7
1,633,738 - MPMX20_01556 0.27 +0.2
1,633,738 - MPMX20_01556 0.27 -1.1
1,633,759 + MPMX20_01556 0.28 -1.4
1,633,767 - MPMX20_01556 0.29 -0.2
1,633,767 - MPMX20_01556 0.29 +0.5
1,633,818 + MPMX20_01556 0.31 -0.9
1,633,825 + MPMX20_01556 0.31 +0.2
1,633,826 - MPMX20_01556 0.31 -1.4
1,633,831 - MPMX20_01556 0.31 -0.3
1,633,882 + MPMX20_01556 0.33 +1.1
1,633,906 - MPMX20_01556 0.34 -1.3
1,633,914 - MPMX20_01556 0.35 -0.5
1,633,914 - MPMX20_01556 0.35 -0.6
1,633,947 - MPMX20_01556 0.36 -1.0
1,633,966 + MPMX20_01556 0.37 -0.2
1,633,979 - MPMX20_01556 0.37 -0.2
1,634,074 + MPMX20_01556 0.41 +0.2
1,634,082 - MPMX20_01556 0.41 -1.6
1,634,216 - MPMX20_01556 0.47 -0.1
1,634,216 - MPMX20_01556 0.47 -0.9
1,634,218 + MPMX20_01556 0.47 -0.7
1,634,218 + MPMX20_01556 0.47 -0.6
1,634,226 - MPMX20_01556 0.47 -0.2
1,634,226 - MPMX20_01556 0.47 +1.4
1,634,226 - MPMX20_01556 0.47 -0.1
1,634,226 - MPMX20_01556 0.47 -1.4
1,634,345 - MPMX20_01556 0.52 -0.6
1,634,381 + MPMX20_01556 0.54 -1.3
1,634,449 + MPMX20_01556 0.56 -1.5
1,634,457 - MPMX20_01556 0.57 -0.4
1,634,457 - MPMX20_01556 0.57 -0.6
1,634,645 + MPMX20_01556 0.64 -2.0
1,634,650 + MPMX20_01556 0.65 -0.7
1,634,658 - MPMX20_01556 0.65 +1.2
1,634,661 + MPMX20_01556 0.65 +0.5
1,634,661 + MPMX20_01556 0.65 +1.1
1,634,669 - MPMX20_01556 0.65 +2.1
1,634,775 + MPMX20_01556 0.70 -0.7
1,634,775 + MPMX20_01556 0.70 +0.1
1,634,783 - MPMX20_01556 0.70 -3.1
1,634,837 + MPMX20_01556 0.72 +0.5
1,634,927 - MPMX20_01556 0.76 -0.9
1,634,956 + MPMX20_01556 0.77 +1.3
1,634,964 - MPMX20_01556 0.78 +1.6
1,634,995 + MPMX20_01556 0.79 -0.7
1,634,995 + MPMX20_01556 0.79 +2.1
1,635,177 - MPMX20_01556 0.86 -0.2
1,635,191 + MPMX20_01556 0.87 +0.3
1,635,191 + MPMX20_01556 0.87 -0.4
1,635,199 - MPMX20_01556 0.87 -0.7
1,635,199 - MPMX20_01556 0.87 +0.3
1,635,199 - MPMX20_01556 0.87 -0.5
1,635,219 - MPMX20_01556 0.88 -2.2
1,635,305 - +1.2
1,635,330 - +0.5
1,635,333 + +5.2
1,635,370 + -0.4
1,635,405 + -0.5
1,635,460 + -1.5
1,635,513 - +0.9
1,635,513 - -0.5
1,636,100 + -0.5
1,636,141 - +2.1
1,636,202 - -1.0
1,636,216 - -0.5
1,636,233 + MPMX20_01558 0.11 +0.0
1,636,233 + MPMX20_01558 0.11 +1.3
1,636,241 - MPMX20_01558 0.12 +0.9
1,636,273 + MPMX20_01558 0.15 +1.6
1,636,275 - MPMX20_01558 0.16 +0.3
1,636,283 + MPMX20_01558 0.16 -0.1
1,636,291 - MPMX20_01558 0.17 +2.5
1,636,297 - MPMX20_01558 0.18 -0.2
1,636,327 + MPMX20_01558 0.22 -2.0
1,636,364 + MPMX20_01558 0.26 +0.4
1,636,381 - MPMX20_01558 0.28 +0.0
1,636,384 + MPMX20_01558 0.28 +0.8
1,636,440 + MPMX20_01558 0.35 -0.3
1,636,443 - MPMX20_01558 0.35 +0.7
1,636,477 + MPMX20_01558 0.39 -0.3
1,636,485 - MPMX20_01558 0.40 +2.8
1,636,487 + MPMX20_01558 0.40 +1.1
1,636,495 - MPMX20_01558 0.41 +0.3
1,636,495 - MPMX20_01558 0.41 +1.7

Or see this region's nucleotide sequence