Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04246 and MPMX20_04247 are separated by 15 nucleotides MPMX20_04247 and MPMX20_04248 overlap by 12 nucleotides MPMX20_04248 and MPMX20_04249 overlap by 1 nucleotides MPMX20_04249 and MPMX20_04250 are separated by 2 nucleotides
MPMX20_04246: MPMX20_04246 - putative ABC transporter ATP-binding protein YheS, at 4,428,950 to 4,430,854
_04246
MPMX20_04247: MPMX20_04247 - HTH-type transcriptional regulator GltC, at 4,430,870 to 4,431,820
_04247
MPMX20_04248: MPMX20_04248 - Malonyl CoA-acyl carrier protein transacylase, at 4,431,809 to 4,432,705
_04248
MPMX20_04249: MPMX20_04249 - Phosphoribosyl-dephospho-CoA transferase, at 4,432,705 to 4,433,322
_04249
MPMX20_04250: MPMX20_04250 - hypothetical protein, at 4,433,325 to 4,434,284
_04250
Position (kb)
4431
4432
4433 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 4430.827 kb on + strand at 4430.892 kb on + strand at 4430.972 kb on - strand, within MPMX20_04247 at 4430.984 kb on + strand, within MPMX20_04247 at 4430.992 kb on - strand, within MPMX20_04247 at 4431.067 kb on + strand, within MPMX20_04247 at 4431.075 kb on - strand, within MPMX20_04247 at 4431.134 kb on - strand, within MPMX20_04247 at 4431.153 kb on + strand, within MPMX20_04247 at 4431.153 kb on + strand, within MPMX20_04247 at 4431.158 kb on + strand, within MPMX20_04247 at 4431.161 kb on - strand, within MPMX20_04247 at 4431.166 kb on - strand, within MPMX20_04247 at 4431.243 kb on + strand, within MPMX20_04247 at 4431.278 kb on + strand, within MPMX20_04247 at 4431.281 kb on - strand, within MPMX20_04247 at 4431.307 kb on - strand, within MPMX20_04247 at 4431.321 kb on - strand, within MPMX20_04247 at 4431.326 kb on - strand, within MPMX20_04247 at 4431.361 kb on - strand, within MPMX20_04247 at 4431.363 kb on + strand, within MPMX20_04247 at 4431.371 kb on - strand, within MPMX20_04247 at 4431.371 kb on - strand, within MPMX20_04247 at 4431.380 kb on - strand, within MPMX20_04247 at 4431.417 kb on + strand, within MPMX20_04247 at 4431.484 kb on + strand, within MPMX20_04247 at 4431.596 kb on - strand, within MPMX20_04247 at 4431.641 kb on + strand, within MPMX20_04247 at 4431.643 kb on - strand, within MPMX20_04247 at 4431.649 kb on - strand, within MPMX20_04247 at 4431.667 kb on - strand, within MPMX20_04247 at 4431.673 kb on + strand, within MPMX20_04247 at 4431.718 kb on - strand, within MPMX20_04247 at 4431.743 kb on - strand at 4431.808 kb on - strand at 4431.808 kb on - strand at 4431.833 kb on + strand at 4431.845 kb on + strand at 4431.849 kb on + strand at 4431.908 kb on + strand, within MPMX20_04248 at 4431.908 kb on + strand, within MPMX20_04248 at 4431.908 kb on + strand, within MPMX20_04248 at 4431.908 kb on + strand, within MPMX20_04248 at 4431.908 kb on + strand, within MPMX20_04248 at 4431.916 kb on - strand, within MPMX20_04248 at 4431.984 kb on - strand, within MPMX20_04248 at 4432.069 kb on + strand, within MPMX20_04248 at 4432.069 kb on + strand, within MPMX20_04248 at 4432.069 kb on + strand, within MPMX20_04248 at 4432.077 kb on - strand, within MPMX20_04248 at 4432.077 kb on - strand, within MPMX20_04248 at 4432.077 kb on - strand, within MPMX20_04248 at 4432.077 kb on - strand, within MPMX20_04248 at 4432.077 kb on - strand, within MPMX20_04248 at 4432.237 kb on - strand, within MPMX20_04248 at 4432.237 kb on - strand, within MPMX20_04248 at 4432.308 kb on + strand, within MPMX20_04248 at 4432.348 kb on + strand, within MPMX20_04248 at 4432.348 kb on + strand, within MPMX20_04248 at 4432.348 kb on + strand, within MPMX20_04248 at 4432.348 kb on + strand, within MPMX20_04248 at 4432.348 kb on + strand, within MPMX20_04248 at 4432.348 kb on + strand, within MPMX20_04248 at 4432.348 kb on + strand, within MPMX20_04248 at 4432.348 kb on + strand, within MPMX20_04248 at 4432.348 kb on + strand, within MPMX20_04248 at 4432.348 kb on + strand, within MPMX20_04248 at 4432.348 kb on + strand, within MPMX20_04248 at 4432.356 kb on - strand, within MPMX20_04248 at 4432.356 kb on - strand, within MPMX20_04248 at 4432.356 kb on - strand, within MPMX20_04248 at 4432.356 kb on - strand, within MPMX20_04248 at 4432.356 kb on - strand, within MPMX20_04248 at 4432.356 kb on - strand, within MPMX20_04248 at 4432.356 kb on - strand, within MPMX20_04248 at 4432.356 kb on - strand, within MPMX20_04248 at 4432.356 kb on - strand, within MPMX20_04248 at 4432.356 kb on - strand, within MPMX20_04248 at 4432.356 kb on - strand, within MPMX20_04248 at 4432.356 kb on - strand, within MPMX20_04248 at 4432.367 kb on + strand, within MPMX20_04248 at 4432.375 kb on - strand, within MPMX20_04248 at 4432.375 kb on - strand, within MPMX20_04248 at 4432.466 kb on - strand, within MPMX20_04248 at 4432.501 kb on + strand, within MPMX20_04248 at 4432.501 kb on + strand, within MPMX20_04248 at 4432.522 kb on - strand, within MPMX20_04248 at 4432.554 kb on + strand, within MPMX20_04248 at 4432.562 kb on - strand, within MPMX20_04248 at 4432.573 kb on + strand, within MPMX20_04248 at 4432.612 kb on - strand, within MPMX20_04248 at 4432.645 kb on + strand at 4432.678 kb on + strand at 4432.678 kb on + strand at 4432.686 kb on - strand at 4432.754 kb on - strand at 4432.806 kb on + strand, within MPMX20_04249 at 4432.961 kb on + strand, within MPMX20_04249 at 4432.962 kb on - strand, within MPMX20_04249 at 4432.968 kb on - strand, within MPMX20_04249 at 4433.093 kb on + strand, within MPMX20_04249 at 4433.101 kb on - strand, within MPMX20_04249 at 4433.119 kb on - strand, within MPMX20_04249 at 4433.160 kb on - strand, within MPMX20_04249 at 4433.222 kb on + strand, within MPMX20_04249 at 4433.235 kb on - strand, within MPMX20_04249 at 4433.235 kb on - strand, within MPMX20_04249 at 4433.237 kb on + strand, within MPMX20_04249 at 4433.248 kb on + strand, within MPMX20_04249 at 4433.280 kb on + strand at 4433.280 kb on + strand at 4433.332 kb on + strand at 4433.340 kb on - strand at 4433.375 kb on + strand at 4433.415 kb on - strand at 4433.422 kb on + strand, within MPMX20_04250 at 4433.423 kb on - strand, within MPMX20_04250 at 4433.441 kb on - strand, within MPMX20_04250 at 4433.472 kb on + strand, within MPMX20_04250 at 4433.477 kb on + strand, within MPMX20_04250 at 4433.480 kb on - strand, within MPMX20_04250 at 4433.492 kb on + strand, within MPMX20_04250 at 4433.492 kb on + strand, within MPMX20_04250 at 4433.500 kb on - strand, within MPMX20_04250 at 4433.505 kb on - strand, within MPMX20_04250 at 4433.507 kb on - strand, within MPMX20_04250 at 4433.555 kb on + strand, within MPMX20_04250 at 4433.564 kb on + strand, within MPMX20_04250 at 4433.592 kb on - strand, within MPMX20_04250 at 4433.621 kb on - strand, within MPMX20_04250 at 4433.623 kb on + strand, within MPMX20_04250 at 4433.623 kb on + strand, within MPMX20_04250 at 4433.623 kb on + strand, within MPMX20_04250 at 4433.623 kb on + strand, within MPMX20_04250 at 4433.631 kb on - strand, within MPMX20_04250 at 4433.631 kb on - strand, within MPMX20_04250 at 4433.631 kb on - strand, within MPMX20_04250
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,430,827 + +0.0 4,430,892 + +2.2 4,430,972 - MPMX20_04247 0.11 +1.2 4,430,984 + MPMX20_04247 0.12 +0.0 4,430,992 - MPMX20_04247 0.13 +1.1 4,431,067 + MPMX20_04247 0.21 -0.2 4,431,075 - MPMX20_04247 0.22 -0.2 4,431,134 - MPMX20_04247 0.28 +2.8 4,431,153 + MPMX20_04247 0.30 -0.2 4,431,153 + MPMX20_04247 0.30 +0.5 4,431,158 + MPMX20_04247 0.30 +2.8 4,431,161 - MPMX20_04247 0.31 +6.4 4,431,166 - MPMX20_04247 0.31 -0.1 4,431,243 + MPMX20_04247 0.39 +1.2 4,431,278 + MPMX20_04247 0.43 +0.6 4,431,281 - MPMX20_04247 0.43 -2.4 4,431,307 - MPMX20_04247 0.46 -0.1 4,431,321 - MPMX20_04247 0.47 -1.5 4,431,326 - MPMX20_04247 0.48 -0.7 4,431,361 - MPMX20_04247 0.52 +1.2 4,431,363 + MPMX20_04247 0.52 -2.6 4,431,371 - MPMX20_04247 0.53 +0.1 4,431,371 - MPMX20_04247 0.53 -0.7 4,431,380 - MPMX20_04247 0.54 +0.8 4,431,417 + MPMX20_04247 0.58 +0.3 4,431,484 + MPMX20_04247 0.65 +1.4 4,431,596 - MPMX20_04247 0.76 +0.5 4,431,641 + MPMX20_04247 0.81 +0.2 4,431,643 - MPMX20_04247 0.81 +1.2 4,431,649 - MPMX20_04247 0.82 -0.3 4,431,667 - MPMX20_04247 0.84 +2.1 4,431,673 + MPMX20_04247 0.84 +0.2 4,431,718 - MPMX20_04247 0.89 -2.1 4,431,743 - -2.8 4,431,808 - +0.1 4,431,808 - -1.3 4,431,833 + +1.2 4,431,845 + -1.1 4,431,849 + -1.3 4,431,908 + MPMX20_04248 0.11 -1.9 4,431,908 + MPMX20_04248 0.11 +2.5 4,431,908 + MPMX20_04248 0.11 +1.8 4,431,908 + MPMX20_04248 0.11 +0.2 4,431,908 + MPMX20_04248 0.11 -0.5 4,431,916 - MPMX20_04248 0.12 +1.2 4,431,984 - MPMX20_04248 0.20 +1.7 4,432,069 + MPMX20_04248 0.29 -2.0 4,432,069 + MPMX20_04248 0.29 +1.0 4,432,069 + MPMX20_04248 0.29 -1.2 4,432,077 - MPMX20_04248 0.30 -0.6 4,432,077 - MPMX20_04248 0.30 +0.8 4,432,077 - MPMX20_04248 0.30 -1.4 4,432,077 - MPMX20_04248 0.30 +0.8 4,432,077 - MPMX20_04248 0.30 -1.2 4,432,237 - MPMX20_04248 0.48 +1.4 4,432,237 - MPMX20_04248 0.48 +0.8 4,432,308 + MPMX20_04248 0.56 +1.2 4,432,348 + MPMX20_04248 0.60 +1.2 4,432,348 + MPMX20_04248 0.60 -1.5 4,432,348 + MPMX20_04248 0.60 -1.8 4,432,348 + MPMX20_04248 0.60 -0.0 4,432,348 + MPMX20_04248 0.60 +0.2 4,432,348 + MPMX20_04248 0.60 -3.2 4,432,348 + MPMX20_04248 0.60 +0.3 4,432,348 + MPMX20_04248 0.60 +1.7 4,432,348 + MPMX20_04248 0.60 -2.2 4,432,348 + MPMX20_04248 0.60 -0.2 4,432,348 + MPMX20_04248 0.60 +0.2 4,432,356 - MPMX20_04248 0.61 +1.7 4,432,356 - MPMX20_04248 0.61 -2.4 4,432,356 - MPMX20_04248 0.61 +0.8 4,432,356 - MPMX20_04248 0.61 -0.3 4,432,356 - MPMX20_04248 0.61 +1.3 4,432,356 - MPMX20_04248 0.61 -2.0 4,432,356 - MPMX20_04248 0.61 +2.4 4,432,356 - MPMX20_04248 0.61 -1.0 4,432,356 - MPMX20_04248 0.61 -1.7 4,432,356 - MPMX20_04248 0.61 +1.4 4,432,356 - MPMX20_04248 0.61 -0.7 4,432,356 - MPMX20_04248 0.61 -1.1 4,432,367 + MPMX20_04248 0.62 -1.0 4,432,375 - MPMX20_04248 0.63 -0.4 4,432,375 - MPMX20_04248 0.63 +1.2 4,432,466 - MPMX20_04248 0.73 -0.6 4,432,501 + MPMX20_04248 0.77 +0.0 4,432,501 + MPMX20_04248 0.77 +1.2 4,432,522 - MPMX20_04248 0.79 +0.8 4,432,554 + MPMX20_04248 0.83 -1.8 4,432,562 - MPMX20_04248 0.84 -0.9 4,432,573 + MPMX20_04248 0.85 -1.3 4,432,612 - MPMX20_04248 0.90 +2.4 4,432,645 + -0.6 4,432,678 + +0.4 4,432,678 + +1.2 4,432,686 - -0.8 4,432,754 - -0.3 4,432,806 + MPMX20_04249 0.16 +2.8 4,432,961 + MPMX20_04249 0.41 -1.2 4,432,962 - MPMX20_04249 0.42 +0.8 4,432,968 - MPMX20_04249 0.43 +0.0 4,433,093 + MPMX20_04249 0.63 -1.3 4,433,101 - MPMX20_04249 0.64 +0.8 4,433,119 - MPMX20_04249 0.67 -0.6 4,433,160 - MPMX20_04249 0.74 +2.8 4,433,222 + MPMX20_04249 0.84 -1.4 4,433,235 - MPMX20_04249 0.86 -1.4 4,433,235 - MPMX20_04249 0.86 -2.3 4,433,237 + MPMX20_04249 0.86 +2.2 4,433,248 + MPMX20_04249 0.88 -0.8 4,433,280 + -2.1 4,433,280 + +1.1 4,433,332 + -0.6 4,433,340 - -0.3 4,433,375 + -2.4 4,433,415 - -1.0 4,433,422 + MPMX20_04250 0.10 +0.5 4,433,423 - MPMX20_04250 0.10 +0.8 4,433,441 - MPMX20_04250 0.12 +0.4 4,433,472 + MPMX20_04250 0.15 +1.2 4,433,477 + MPMX20_04250 0.16 -1.2 4,433,480 - MPMX20_04250 0.16 +1.4 4,433,492 + MPMX20_04250 0.17 -2.2 4,433,492 + MPMX20_04250 0.17 -0.8 4,433,500 - MPMX20_04250 0.18 -0.6 4,433,505 - MPMX20_04250 0.19 -2.6 4,433,507 - MPMX20_04250 0.19 +0.8 4,433,555 + MPMX20_04250 0.24 -2.0 4,433,564 + MPMX20_04250 0.25 +1.2 4,433,592 - MPMX20_04250 0.28 -2.2 4,433,621 - MPMX20_04250 0.31 -0.6 4,433,623 + MPMX20_04250 0.31 +0.8 4,433,623 + MPMX20_04250 0.31 -1.0 4,433,623 + MPMX20_04250 0.31 -1.0 4,433,623 + MPMX20_04250 0.31 +0.2 4,433,631 - MPMX20_04250 0.32 -1.5 4,433,631 - MPMX20_04250 0.32 -1.6 4,433,631 - MPMX20_04250 0.32 -1.8
Or see this region's nucleotide sequence