Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04104

Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04103 and MPMX20_04104 are separated by 14 nucleotidesMPMX20_04104 and MPMX20_04105 overlap by 4 nucleotidesMPMX20_04105 and MPMX20_04106 overlap by 32 nucleotides MPMX20_04103: MPMX20_04103 - Arabinose 5-phosphate isomerase KdsD, at 4,297,405 to 4,298,391 _04103 MPMX20_04104: MPMX20_04104 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC, at 4,298,406 to 4,298,972 _04104 MPMX20_04105: MPMX20_04105 - Lipopolysaccharide export system protein LptC, at 4,298,969 to 4,299,544 _04105 MPMX20_04106: MPMX20_04106 - Lipopolysaccharide export system protein LptA, at 4,299,513 to 4,300,073 _04106 Position (kb) 4298 4299Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4297.467 kb on - strandat 4297.474 kb on + strandat 4297.480 kb on + strandat 4297.488 kb on - strandat 4297.490 kb on + strandat 4297.498 kb on - strandat 4297.580 kb on + strand, within MPMX20_04103at 4297.580 kb on + strand, within MPMX20_04103at 4297.713 kb on + strand, within MPMX20_04103at 4297.713 kb on + strand, within MPMX20_04103at 4297.749 kb on + strand, within MPMX20_04103at 4297.829 kb on + strand, within MPMX20_04103at 4297.841 kb on + strand, within MPMX20_04103at 4297.855 kb on + strand, within MPMX20_04103at 4297.908 kb on + strand, within MPMX20_04103at 4297.916 kb on - strand, within MPMX20_04103at 4297.916 kb on - strand, within MPMX20_04103at 4297.952 kb on + strand, within MPMX20_04103at 4298.008 kb on - strand, within MPMX20_04103at 4298.014 kb on - strand, within MPMX20_04103at 4298.019 kb on + strand, within MPMX20_04103at 4298.037 kb on - strand, within MPMX20_04103at 4298.039 kb on + strand, within MPMX20_04103at 4298.049 kb on - strand, within MPMX20_04103at 4298.198 kb on + strand, within MPMX20_04103at 4298.198 kb on + strand, within MPMX20_04103at 4298.217 kb on + strand, within MPMX20_04103at 4298.217 kb on + strand, within MPMX20_04103at 4298.245 kb on - strand, within MPMX20_04103at 4298.262 kb on + strand, within MPMX20_04103at 4298.320 kb on - strandat 4298.348 kb on + strandat 4298.380 kb on + strandat 4298.380 kb on + strandat 4298.380 kb on + strandat 4298.386 kb on + strandat 4298.396 kb on + strandat 4298.396 kb on + strandat 4298.396 kb on + strandat 4298.437 kb on + strandat 4298.437 kb on + strandat 4298.452 kb on + strandat 4298.459 kb on + strandat 4298.494 kb on + strand, within MPMX20_04104at 4298.605 kb on + strand, within MPMX20_04104at 4298.680 kb on + strand, within MPMX20_04104at 4298.819 kb on + strand, within MPMX20_04104at 4298.821 kb on + strand, within MPMX20_04104at 4298.869 kb on + strand, within MPMX20_04104at 4298.951 kb on + strandat 4299.336 kb on + strand, within MPMX20_04105at 4299.373 kb on + strand, within MPMX20_04105at 4299.373 kb on + strand, within MPMX20_04105at 4299.407 kb on + strand, within MPMX20_04105at 4299.447 kb on + strand, within MPMX20_04105at 4299.499 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
4,297,467 - +1.0
4,297,474 + -0.4
4,297,480 + -0.2
4,297,488 - +1.8
4,297,490 + -2.8
4,297,498 - -0.0
4,297,580 + MPMX20_04103 0.18 -0.4
4,297,580 + MPMX20_04103 0.18 +1.4
4,297,713 + MPMX20_04103 0.31 -1.0
4,297,713 + MPMX20_04103 0.31 +0.5
4,297,749 + MPMX20_04103 0.35 +1.3
4,297,829 + MPMX20_04103 0.43 -0.9
4,297,841 + MPMX20_04103 0.44 +2.8
4,297,855 + MPMX20_04103 0.46 +0.6
4,297,908 + MPMX20_04103 0.51 +0.5
4,297,916 - MPMX20_04103 0.52 +1.1
4,297,916 - MPMX20_04103 0.52 -1.1
4,297,952 + MPMX20_04103 0.55 +0.6
4,298,008 - MPMX20_04103 0.61 +1.8
4,298,014 - MPMX20_04103 0.62 -1.5
4,298,019 + MPMX20_04103 0.62 +1.0
4,298,037 - MPMX20_04103 0.64 -0.0
4,298,039 + MPMX20_04103 0.64 +1.2
4,298,049 - MPMX20_04103 0.65 +1.2
4,298,198 + MPMX20_04103 0.80 -0.2
4,298,198 + MPMX20_04103 0.80 -0.5
4,298,217 + MPMX20_04103 0.82 -0.8
4,298,217 + MPMX20_04103 0.82 +0.0
4,298,245 - MPMX20_04103 0.85 -1.5
4,298,262 + MPMX20_04103 0.87 -2.7
4,298,320 - -0.8
4,298,348 + -0.8
4,298,380 + -1.1
4,298,380 + -0.0
4,298,380 + -1.0
4,298,386 + -1.0
4,298,396 + -0.3
4,298,396 + +0.5
4,298,396 + -0.0
4,298,437 + -0.6
4,298,437 + -0.3
4,298,452 + -1.5
4,298,459 + +0.5
4,298,494 + MPMX20_04104 0.16 -1.8
4,298,605 + MPMX20_04104 0.35 -0.2
4,298,680 + MPMX20_04104 0.48 -1.4
4,298,819 + MPMX20_04104 0.73 +3.8
4,298,821 + MPMX20_04104 0.73 -4.6
4,298,869 + MPMX20_04104 0.82 -3.0
4,298,951 + +2.2
4,299,336 + MPMX20_04105 0.64 -0.0
4,299,373 + MPMX20_04105 0.70 -0.2
4,299,373 + MPMX20_04105 0.70 -1.4
4,299,407 + MPMX20_04105 0.76 +0.8
4,299,447 + MPMX20_04105 0.83 -1.4
4,299,499 + +2.8

Or see this region's nucleotide sequence