Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_03714 and MPMX20_03715 are separated by 313 nucleotides MPMX20_03715 and MPMX20_03716 are separated by 63 nucleotides
MPMX20_03714: MPMX20_03714 - Arabinose-proton symporter, at 3,915,927 to 3,917,342
_03714
MPMX20_03715: MPMX20_03715 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase, at 3,917,656 to 3,918,417
_03715
MPMX20_03716: MPMX20_03716 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase, at 3,918,481 to 3,919,317
_03716
Position (kb)
3917
3918
3919 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 3916.695 kb on - strand, within MPMX20_03714 at 3916.838 kb on + strand, within MPMX20_03714 at 3916.886 kb on + strand, within MPMX20_03714 at 3916.887 kb on + strand, within MPMX20_03714 at 3916.894 kb on - strand, within MPMX20_03714 at 3916.936 kb on + strand, within MPMX20_03714 at 3916.936 kb on + strand, within MPMX20_03714 at 3916.951 kb on + strand, within MPMX20_03714 at 3916.951 kb on + strand, within MPMX20_03714 at 3916.951 kb on + strand, within MPMX20_03714 at 3916.951 kb on + strand, within MPMX20_03714 at 3916.951 kb on + strand, within MPMX20_03714 at 3916.959 kb on - strand, within MPMX20_03714 at 3916.959 kb on - strand, within MPMX20_03714 at 3916.959 kb on - strand, within MPMX20_03714 at 3916.962 kb on + strand, within MPMX20_03714 at 3916.970 kb on + strand, within MPMX20_03714 at 3916.983 kb on - strand, within MPMX20_03714 at 3916.983 kb on - strand, within MPMX20_03714 at 3916.993 kb on - strand, within MPMX20_03714 at 3916.993 kb on - strand, within MPMX20_03714 at 3916.995 kb on + strand, within MPMX20_03714 at 3917.005 kb on + strand, within MPMX20_03714 at 3917.094 kb on + strand, within MPMX20_03714 at 3917.107 kb on + strand, within MPMX20_03714 at 3917.107 kb on + strand, within MPMX20_03714 at 3917.117 kb on - strand, within MPMX20_03714 at 3917.170 kb on - strand, within MPMX20_03714 at 3917.205 kb on - strand at 3917.224 kb on + strand at 3917.241 kb on + strand at 3917.250 kb on + strand at 3917.297 kb on + strand at 3917.317 kb on + strand at 3917.318 kb on + strand at 3917.318 kb on + strand at 3917.327 kb on + strand at 3917.395 kb on + strand at 3917.463 kb on - strand at 3917.582 kb on - strand at 3917.589 kb on - strand at 3917.623 kb on + strand at 3917.635 kb on + strand at 3917.643 kb on - strand at 3917.680 kb on - strand at 3917.688 kb on + strand at 3917.688 kb on + strand at 3917.688 kb on + strand at 3917.690 kb on + strand at 3917.693 kb on - strand at 3917.696 kb on - strand at 3917.698 kb on - strand at 3917.698 kb on - strand at 3917.750 kb on - strand, within MPMX20_03715 at 3917.750 kb on - strand, within MPMX20_03715 at 3917.778 kb on + strand, within MPMX20_03715 at 3917.786 kb on - strand, within MPMX20_03715 at 3917.798 kb on + strand, within MPMX20_03715 at 3917.803 kb on + strand, within MPMX20_03715 at 3917.808 kb on + strand, within MPMX20_03715 at 3917.811 kb on - strand, within MPMX20_03715 at 3917.816 kb on + strand, within MPMX20_03715 at 3917.816 kb on - strand, within MPMX20_03715 at 3917.831 kb on + strand, within MPMX20_03715 at 3917.836 kb on + strand, within MPMX20_03715 at 3917.839 kb on - strand, within MPMX20_03715 at 3917.845 kb on + strand, within MPMX20_03715 at 3917.856 kb on + strand, within MPMX20_03715 at 3917.869 kb on + strand, within MPMX20_03715 at 3917.884 kb on - strand, within MPMX20_03715 at 3917.893 kb on + strand, within MPMX20_03715 at 3917.897 kb on + strand, within MPMX20_03715 at 3917.942 kb on + strand, within MPMX20_03715 at 3917.942 kb on + strand, within MPMX20_03715 at 3917.955 kb on + strand, within MPMX20_03715 at 3917.979 kb on + strand, within MPMX20_03715 at 3917.979 kb on + strand, within MPMX20_03715 at 3917.979 kb on + strand, within MPMX20_03715 at 3918.001 kb on + strand, within MPMX20_03715 at 3918.021 kb on - strand, within MPMX20_03715 at 3918.041 kb on + strand, within MPMX20_03715 at 3918.070 kb on - strand, within MPMX20_03715 at 3918.070 kb on - strand, within MPMX20_03715 at 3918.083 kb on - strand, within MPMX20_03715 at 3918.089 kb on + strand, within MPMX20_03715 at 3918.100 kb on - strand, within MPMX20_03715 at 3918.135 kb on + strand, within MPMX20_03715 at 3918.143 kb on - strand, within MPMX20_03715 at 3918.187 kb on + strand, within MPMX20_03715 at 3918.187 kb on + strand, within MPMX20_03715 at 3918.195 kb on + strand, within MPMX20_03715 at 3918.195 kb on + strand, within MPMX20_03715 at 3918.195 kb on + strand, within MPMX20_03715 at 3918.195 kb on - strand, within MPMX20_03715 at 3918.203 kb on - strand, within MPMX20_03715 at 3918.203 kb on - strand, within MPMX20_03715 at 3918.282 kb on - strand, within MPMX20_03715 at 3918.301 kb on - strand, within MPMX20_03715 at 3918.301 kb on - strand, within MPMX20_03715 at 3918.338 kb on + strand, within MPMX20_03715 at 3918.343 kb on + strand at 3918.344 kb on + strand at 3918.344 kb on + strand at 3918.351 kb on - strand at 3918.383 kb on + strand at 3918.383 kb on + strand at 3918.383 kb on + strand at 3918.391 kb on - strand at 3918.391 kb on - strand at 3918.441 kb on + strand at 3918.444 kb on + strand at 3918.444 kb on + strand at 3918.466 kb on - strand at 3918.466 kb on - strand at 3918.488 kb on + strand at 3918.585 kb on + strand, within MPMX20_03716 at 3918.593 kb on - strand, within MPMX20_03716 at 3918.718 kb on + strand, within MPMX20_03716 at 3918.743 kb on + strand, within MPMX20_03716 at 3918.751 kb on - strand, within MPMX20_03716 at 3918.751 kb on - strand, within MPMX20_03716 at 3918.757 kb on + strand, within MPMX20_03716 at 3918.762 kb on + strand, within MPMX20_03716 at 3918.767 kb on + strand, within MPMX20_03716 at 3918.767 kb on + strand, within MPMX20_03716 at 3918.770 kb on - strand, within MPMX20_03716 at 3918.775 kb on - strand, within MPMX20_03716 at 3918.777 kb on + strand, within MPMX20_03716 at 3918.777 kb on + strand, within MPMX20_03716 at 3918.777 kb on + strand, within MPMX20_03716 at 3918.777 kb on + strand, within MPMX20_03716 at 3918.777 kb on + strand, within MPMX20_03716 at 3918.785 kb on - strand, within MPMX20_03716 at 3918.785 kb on - strand, within MPMX20_03716 at 3918.785 kb on - strand, within MPMX20_03716 at 3918.785 kb on - strand, within MPMX20_03716 at 3918.790 kb on - strand, within MPMX20_03716 at 3918.796 kb on + strand, within MPMX20_03716 at 3918.797 kb on - strand, within MPMX20_03716 at 3918.912 kb on + strand, within MPMX20_03716 at 3918.914 kb on + strand, within MPMX20_03716 at 3918.920 kb on - strand, within MPMX20_03716 at 3918.951 kb on + strand, within MPMX20_03716 at 3918.964 kb on - strand, within MPMX20_03716 at 3918.984 kb on + strand, within MPMX20_03716 at 3919.000 kb on - strand, within MPMX20_03716 at 3919.028 kb on + strand, within MPMX20_03716 at 3919.028 kb on + strand, within MPMX20_03716 at 3919.080 kb on - strand, within MPMX20_03716 at 3919.126 kb on + strand, within MPMX20_03716 at 3919.127 kb on - strand, within MPMX20_03716 at 3919.151 kb on - strand, within MPMX20_03716 at 3919.157 kb on - strand, within MPMX20_03716 at 3919.163 kb on + strand, within MPMX20_03716 at 3919.164 kb on + strand, within MPMX20_03716 at 3919.164 kb on + strand, within MPMX20_03716 at 3919.172 kb on - strand, within MPMX20_03716 at 3919.198 kb on + strand, within MPMX20_03716 at 3919.198 kb on + strand, within MPMX20_03716 at 3919.198 kb on + strand, within MPMX20_03716 at 3919.198 kb on + strand, within MPMX20_03716 at 3919.198 kb on + strand, within MPMX20_03716 at 3919.198 kb on + strand, within MPMX20_03716 at 3919.198 kb on + strand, within MPMX20_03716 at 3919.198 kb on + strand, within MPMX20_03716 at 3919.199 kb on + strand, within MPMX20_03716 at 3919.206 kb on - strand, within MPMX20_03716 at 3919.206 kb on - strand, within MPMX20_03716 at 3919.206 kb on - strand, within MPMX20_03716 at 3919.207 kb on - strand, within MPMX20_03716 at 3919.208 kb on + strand, within MPMX20_03716 at 3919.216 kb on - strand, within MPMX20_03716 at 3919.216 kb on - strand, within MPMX20_03716 at 3919.223 kb on + strand, within MPMX20_03716 at 3919.231 kb on + strand, within MPMX20_03716 at 3919.231 kb on - strand, within MPMX20_03716 at 3919.239 kb on - strand at 3919.260 kb on + strand at 3919.260 kb on + strand at 3919.260 kb on + strand at 3919.268 kb on + strand at 3919.268 kb on - strand at 3919.268 kb on - strand at 3919.268 kb on - strand at 3919.276 kb on - strand at 3919.277 kb on + strand at 3919.277 kb on + strand at 3919.285 kb on - strand at 3919.292 kb on + strand at 3919.292 kb on + strand at 3919.292 kb on + strand at 3919.299 kb on + strand at 3919.300 kb on + strand at 3919.323 kb on + strand at 3919.333 kb on + strand at 3919.387 kb on + strand at 3919.390 kb on + strand at 3919.390 kb on + strand at 3919.391 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.392 kb on + strand at 3919.399 kb on - strand at 3919.400 kb on - strand at 3919.400 kb on - strand at 3919.400 kb on - strand at 3919.400 kb on - strand at 3919.400 kb on - strand at 3919.400 kb on - strand at 3919.400 kb on - strand at 3919.400 kb on - strand at 3919.400 kb on - strand at 3919.400 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 3,916,695 - MPMX20_03714 0.54 +1.1 3,916,838 + MPMX20_03714 0.64 +0.4 3,916,886 + MPMX20_03714 0.68 -0.9 3,916,887 + MPMX20_03714 0.68 +0.1 3,916,894 - MPMX20_03714 0.68 -0.1 3,916,936 + MPMX20_03714 0.71 +0.3 3,916,936 + MPMX20_03714 0.71 +0.7 3,916,951 + MPMX20_03714 0.72 -2.3 3,916,951 + MPMX20_03714 0.72 -0.1 3,916,951 + MPMX20_03714 0.72 -0.3 3,916,951 + MPMX20_03714 0.72 -0.3 3,916,951 + MPMX20_03714 0.72 +0.1 3,916,959 - MPMX20_03714 0.73 -2.5 3,916,959 - MPMX20_03714 0.73 +0.4 3,916,959 - MPMX20_03714 0.73 +2.1 3,916,962 + MPMX20_03714 0.73 -0.4 3,916,970 + MPMX20_03714 0.74 +1.7 3,916,983 - MPMX20_03714 0.75 +0.0 3,916,983 - MPMX20_03714 0.75 +0.7 3,916,993 - MPMX20_03714 0.75 +1.1 3,916,993 - MPMX20_03714 0.75 +0.1 3,916,995 + MPMX20_03714 0.75 -0.6 3,917,005 + MPMX20_03714 0.76 -1.7 3,917,094 + MPMX20_03714 0.82 +0.7 3,917,107 + MPMX20_03714 0.83 -0.2 3,917,107 + MPMX20_03714 0.83 -0.9 3,917,117 - MPMX20_03714 0.84 -0.7 3,917,170 - MPMX20_03714 0.88 +0.2 3,917,205 - -1.3 3,917,224 + +0.9 3,917,241 + +1.7 3,917,250 + +2.2 3,917,297 + +1.1 3,917,317 + +0.1 3,917,318 + -2.4 3,917,318 + +0.9 3,917,327 + -1.2 3,917,395 + +2.7 3,917,463 - +0.7 3,917,582 - +0.1 3,917,589 - +1.1 3,917,623 + -0.1 3,917,635 + +0.8 3,917,643 - +1.1 3,917,680 - -0.1 3,917,688 + +0.4 3,917,688 + -2.6 3,917,688 + +2.1 3,917,690 + +4.9 3,917,693 - +1.9 3,917,696 - +0.8 3,917,698 - -0.4 3,917,698 - -0.4 3,917,750 - MPMX20_03715 0.12 +0.1 3,917,750 - MPMX20_03715 0.12 -0.1 3,917,778 + MPMX20_03715 0.16 +0.7 3,917,786 - MPMX20_03715 0.17 +1.1 3,917,798 + MPMX20_03715 0.19 +0.5 3,917,803 + MPMX20_03715 0.19 -1.1 3,917,808 + MPMX20_03715 0.20 -0.7 3,917,811 - MPMX20_03715 0.20 -0.3 3,917,816 + MPMX20_03715 0.21 -0.1 3,917,816 - MPMX20_03715 0.21 +1.1 3,917,831 + MPMX20_03715 0.23 +0.4 3,917,836 + MPMX20_03715 0.24 -0.7 3,917,839 - MPMX20_03715 0.24 -1.4 3,917,845 + MPMX20_03715 0.25 +1.7 3,917,856 + MPMX20_03715 0.26 -0.5 3,917,869 + MPMX20_03715 0.28 +0.7 3,917,884 - MPMX20_03715 0.30 +2.7 3,917,893 + MPMX20_03715 0.31 +0.7 3,917,897 + MPMX20_03715 0.32 -0.6 3,917,942 + MPMX20_03715 0.38 -0.1 3,917,942 + MPMX20_03715 0.38 -0.3 3,917,955 + MPMX20_03715 0.39 +0.5 3,917,979 + MPMX20_03715 0.42 +1.1 3,917,979 + MPMX20_03715 0.42 -2.3 3,917,979 + MPMX20_03715 0.42 +0.5 3,918,001 + MPMX20_03715 0.45 +1.7 3,918,021 - MPMX20_03715 0.48 -2.2 3,918,041 + MPMX20_03715 0.51 -0.8 3,918,070 - MPMX20_03715 0.54 -0.6 3,918,070 - MPMX20_03715 0.54 -0.9 3,918,083 - MPMX20_03715 0.56 -0.4 3,918,089 + MPMX20_03715 0.57 -0.4 3,918,100 - MPMX20_03715 0.58 +2.7 3,918,135 + MPMX20_03715 0.63 +1.4 3,918,143 - MPMX20_03715 0.64 +0.4 3,918,187 + MPMX20_03715 0.70 +1.7 3,918,187 + MPMX20_03715 0.70 -0.7 3,918,195 + MPMX20_03715 0.71 -2.2 3,918,195 + MPMX20_03715 0.71 -1.0 3,918,195 + MPMX20_03715 0.71 -0.4 3,918,195 - MPMX20_03715 0.71 -1.7 3,918,203 - MPMX20_03715 0.72 +0.0 3,918,203 - MPMX20_03715 0.72 -1.2 3,918,282 - MPMX20_03715 0.82 +0.4 3,918,301 - MPMX20_03715 0.85 -0.7 3,918,301 - MPMX20_03715 0.85 +1.9 3,918,338 + MPMX20_03715 0.90 -0.3 3,918,343 + -1.2 3,918,344 + -1.6 3,918,344 + -1.6 3,918,351 - -0.1 3,918,383 + +0.7 3,918,383 + +0.2 3,918,383 + +2.3 3,918,391 - -0.4 3,918,391 - -0.0 3,918,441 + +0.1 3,918,444 + +3.6 3,918,444 + +1.7 3,918,466 - +2.7 3,918,466 - -2.6 3,918,488 + -1.9 3,918,585 + MPMX20_03716 0.12 +0.1 3,918,593 - MPMX20_03716 0.13 +2.1 3,918,718 + MPMX20_03716 0.28 +0.5 3,918,743 + MPMX20_03716 0.31 -1.7 3,918,751 - MPMX20_03716 0.32 -0.6 3,918,751 - MPMX20_03716 0.32 -1.0 3,918,757 + MPMX20_03716 0.33 -2.2 3,918,762 + MPMX20_03716 0.34 +3.1 3,918,767 + MPMX20_03716 0.34 -1.7 3,918,767 + MPMX20_03716 0.34 +1.1 3,918,770 - MPMX20_03716 0.35 -0.1 3,918,775 - MPMX20_03716 0.35 -1.5 3,918,777 + MPMX20_03716 0.35 +0.7 3,918,777 + MPMX20_03716 0.35 -2.1 3,918,777 + MPMX20_03716 0.35 -1.0 3,918,777 + MPMX20_03716 0.35 -0.5 3,918,777 + MPMX20_03716 0.35 -2.7 3,918,785 - MPMX20_03716 0.36 +1.2 3,918,785 - MPMX20_03716 0.36 +0.1 3,918,785 - MPMX20_03716 0.36 -0.3 3,918,785 - MPMX20_03716 0.36 -0.4 3,918,790 - MPMX20_03716 0.37 +0.7 3,918,796 + MPMX20_03716 0.38 +1.7 3,918,797 - MPMX20_03716 0.38 -3.1 3,918,912 + MPMX20_03716 0.51 +0.4 3,918,914 + MPMX20_03716 0.52 -0.9 3,918,920 - MPMX20_03716 0.52 -3.5 3,918,951 + MPMX20_03716 0.56 +0.9 3,918,964 - MPMX20_03716 0.58 +0.7 3,918,984 + MPMX20_03716 0.60 -0.9 3,919,000 - MPMX20_03716 0.62 -0.4 3,919,028 + MPMX20_03716 0.65 +0.4 3,919,028 + MPMX20_03716 0.65 +0.4 3,919,080 - MPMX20_03716 0.72 -0.4 3,919,126 + MPMX20_03716 0.77 -1.1 3,919,127 - MPMX20_03716 0.77 -1.6 3,919,151 - MPMX20_03716 0.80 +1.1 3,919,157 - MPMX20_03716 0.81 -1.6 3,919,163 + MPMX20_03716 0.81 +2.7 3,919,164 + MPMX20_03716 0.82 +0.1 3,919,164 + MPMX20_03716 0.82 -0.1 3,919,172 - MPMX20_03716 0.83 -1.2 3,919,198 + MPMX20_03716 0.86 +1.9 3,919,198 + MPMX20_03716 0.86 +0.1 3,919,198 + MPMX20_03716 0.86 -0.1 3,919,198 + MPMX20_03716 0.86 -1.8 3,919,198 + MPMX20_03716 0.86 -0.9 3,919,198 + MPMX20_03716 0.86 -1.2 3,919,198 + MPMX20_03716 0.86 -0.7 3,919,198 + MPMX20_03716 0.86 -0.7 3,919,199 + MPMX20_03716 0.86 +0.1 3,919,206 - MPMX20_03716 0.87 +0.4 3,919,206 - MPMX20_03716 0.87 -0.2 3,919,206 - MPMX20_03716 0.87 -4.0 3,919,207 - MPMX20_03716 0.87 -0.9 3,919,208 + MPMX20_03716 0.87 -0.3 3,919,216 - MPMX20_03716 0.88 -1.1 3,919,216 - MPMX20_03716 0.88 -0.6 3,919,223 + MPMX20_03716 0.89 -0.2 3,919,231 + MPMX20_03716 0.90 +4.3 3,919,231 - MPMX20_03716 0.90 +0.2 3,919,239 - -1.6 3,919,260 + +1.7 3,919,260 + +0.1 3,919,260 + -2.2 3,919,268 + -0.5 3,919,268 - +0.1 3,919,268 - +3.1 3,919,268 - +0.7 3,919,276 - +2.7 3,919,277 + -1.0 3,919,277 + +1.7 3,919,285 - -1.6 3,919,292 + -1.0 3,919,292 + -0.5 3,919,292 + +0.1 3,919,299 + +1.1 3,919,300 + -2.0 3,919,323 + -0.6 3,919,333 + -0.5 3,919,387 + +1.7 3,919,390 + -1.3 3,919,390 + +1.1 3,919,391 + +1.4 3,919,392 + +2.7 3,919,392 + -0.4 3,919,392 + +0.5 3,919,392 + +0.1 3,919,392 + -0.9 3,919,392 + +0.7 3,919,392 + +1.0 3,919,392 + +2.1 3,919,392 + -1.7 3,919,392 + +0.5 3,919,392 + -3.9 3,919,392 + -0.7 3,919,392 + -0.4 3,919,392 + +0.4 3,919,392 + +0.6 3,919,392 + -1.4 3,919,392 + -0.9 3,919,392 + +4.3 3,919,392 + +0.3 3,919,392 + -2.7 3,919,392 + -0.3 3,919,392 + -1.8 3,919,392 + -2.8 3,919,392 + -1.2 3,919,392 + +0.2 3,919,392 + +0.7 3,919,392 + -2.7 3,919,392 + +1.7 3,919,392 + -0.2 3,919,392 + -2.6 3,919,392 + +1.4 3,919,392 + -0.9 3,919,392 + -1.5 3,919,392 + +1.1 3,919,392 + -1.0 3,919,392 + +2.7 3,919,392 + -0.6 3,919,392 + -1.1 3,919,392 + -0.6 3,919,399 - +0.1 3,919,400 - +0.4 3,919,400 - -1.4 3,919,400 - -0.3 3,919,400 - -0.6 3,919,400 - +1.1 3,919,400 - -0.9 3,919,400 - +1.1 3,919,400 - -0.1 3,919,400 - +1.7 3,919,400 - +0.4
Or see this region's nucleotide sequence