Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01408

Experiment: 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_01407 and MPMX20_01408 are separated by 751 nucleotidesMPMX20_01408 and MPMX20_01409 are separated by 86 nucleotides MPMX20_01407: MPMX20_01407 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 1,470,228 to 1,470,950 _01407 MPMX20_01408: MPMX20_01408 - UvrABC system protein B, at 1,471,702 to 1,473,717 _01408 MPMX20_01409: MPMX20_01409 - Putative gluconeogenesis factor, at 1,473,804 to 1,474,712 _01409 Position (kb) 1471 1472 1473 1474Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1470.722 kb on + strand, within MPMX20_01407at 1470.870 kb on - strand, within MPMX20_01407at 1470.959 kb on + strandat 1470.983 kb on - strandat 1471.123 kb on - strandat 1471.287 kb on + strandat 1471.319 kb on - strandat 1471.361 kb on - strandat 1471.462 kb on - strandat 1471.520 kb on - strandat 1471.703 kb on + strandat 1471.845 kb on - strandat 1471.892 kb on - strandat 1471.893 kb on - strandat 1471.917 kb on + strand, within MPMX20_01408at 1471.917 kb on + strand, within MPMX20_01408at 1471.917 kb on + strand, within MPMX20_01408at 1471.917 kb on + strand, within MPMX20_01408at 1471.925 kb on - strand, within MPMX20_01408at 1471.925 kb on - strand, within MPMX20_01408at 1471.925 kb on - strand, within MPMX20_01408at 1471.990 kb on - strand, within MPMX20_01408at 1472.013 kb on - strand, within MPMX20_01408at 1472.215 kb on + strand, within MPMX20_01408at 1472.223 kb on - strand, within MPMX20_01408at 1472.233 kb on - strand, within MPMX20_01408at 1472.370 kb on - strand, within MPMX20_01408at 1472.426 kb on - strand, within MPMX20_01408at 1472.426 kb on - strand, within MPMX20_01408at 1472.426 kb on - strand, within MPMX20_01408at 1472.447 kb on + strand, within MPMX20_01408at 1472.447 kb on + strand, within MPMX20_01408at 1472.487 kb on + strand, within MPMX20_01408at 1472.495 kb on - strand, within MPMX20_01408at 1472.510 kb on + strand, within MPMX20_01408at 1472.518 kb on - strand, within MPMX20_01408at 1472.563 kb on - strand, within MPMX20_01408at 1472.645 kb on + strand, within MPMX20_01408at 1472.761 kb on + strand, within MPMX20_01408at 1472.817 kb on + strand, within MPMX20_01408at 1472.992 kb on - strand, within MPMX20_01408at 1472.994 kb on + strand, within MPMX20_01408at 1473.095 kb on + strand, within MPMX20_01408at 1473.095 kb on + strand, within MPMX20_01408at 1473.095 kb on + strand, within MPMX20_01408at 1473.206 kb on + strand, within MPMX20_01408at 1473.206 kb on + strand, within MPMX20_01408at 1473.209 kb on - strand, within MPMX20_01408at 1473.214 kb on - strand, within MPMX20_01408at 1473.226 kb on + strand, within MPMX20_01408at 1473.226 kb on + strand, within MPMX20_01408at 1473.226 kb on + strand, within MPMX20_01408at 1473.226 kb on + strand, within MPMX20_01408at 1473.234 kb on - strand, within MPMX20_01408at 1473.236 kb on + strand, within MPMX20_01408at 1473.307 kb on + strand, within MPMX20_01408at 1473.449 kb on + strand, within MPMX20_01408at 1473.452 kb on - strand, within MPMX20_01408at 1473.499 kb on + strand, within MPMX20_01408at 1473.507 kb on - strand, within MPMX20_01408at 1473.507 kb on - strand, within MPMX20_01408at 1473.507 kb on - strand, within MPMX20_01408at 1473.507 kb on - strand, within MPMX20_01408at 1473.507 kb on - strand, within MPMX20_01408at 1473.507 kb on - strand, within MPMX20_01408at 1473.642 kb on - strandat 1473.707 kb on - strandat 1473.771 kb on - strandat 1473.781 kb on + strandat 1473.836 kb on - strandat 1473.845 kb on + strandat 1473.848 kb on + strandat 1473.848 kb on + strandat 1473.899 kb on - strand, within MPMX20_01409at 1474.088 kb on - strand, within MPMX20_01409at 1474.178 kb on + strand, within MPMX20_01409at 1474.205 kb on + strand, within MPMX20_01409at 1474.213 kb on - strand, within MPMX20_01409at 1474.271 kb on - strand, within MPMX20_01409at 1474.271 kb on - strand, within MPMX20_01409at 1474.350 kb on - strand, within MPMX20_01409at 1474.610 kb on + strand, within MPMX20_01409at 1474.610 kb on + strand, within MPMX20_01409at 1474.610 kb on + strand, within MPMX20_01409at 1474.618 kb on - strand, within MPMX20_01409at 1474.618 kb on - strand, within MPMX20_01409at 1474.629 kb on - strandat 1474.647 kb on + strandat 1474.647 kb on + strandat 1474.647 kb on + strandat 1474.647 kb on + strandat 1474.647 kb on + strandat 1474.655 kb on - strandat 1474.655 kb on - strandat 1474.655 kb on - strandat 1474.655 kb on - strandat 1474.655 kb on - strandat 1474.699 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 0.1X LB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
remove
1,470,722 + MPMX20_01407 0.68 -1.4
1,470,870 - MPMX20_01407 0.89 -0.8
1,470,959 + -1.2
1,470,983 - +1.8
1,471,123 - -2.1
1,471,287 + +2.0
1,471,319 - +0.0
1,471,361 - -1.5
1,471,462 - -0.0
1,471,520 - -0.0
1,471,703 + -2.8
1,471,845 - -1.3
1,471,892 - -1.9
1,471,893 - +0.3
1,471,917 + MPMX20_01408 0.11 -1.5
1,471,917 + MPMX20_01408 0.11 -3.7
1,471,917 + MPMX20_01408 0.11 -1.2
1,471,917 + MPMX20_01408 0.11 -1.2
1,471,925 - MPMX20_01408 0.11 -0.5
1,471,925 - MPMX20_01408 0.11 -1.7
1,471,925 - MPMX20_01408 0.11 -2.4
1,471,990 - MPMX20_01408 0.14 -2.8
1,472,013 - MPMX20_01408 0.15 -0.7
1,472,215 + MPMX20_01408 0.25 -1.9
1,472,223 - MPMX20_01408 0.26 +1.3
1,472,233 - MPMX20_01408 0.26 -1.6
1,472,370 - MPMX20_01408 0.33 -3.2
1,472,426 - MPMX20_01408 0.36 -3.6
1,472,426 - MPMX20_01408 0.36 -0.2
1,472,426 - MPMX20_01408 0.36 -1.5
1,472,447 + MPMX20_01408 0.37 -1.7
1,472,447 + MPMX20_01408 0.37 +1.8
1,472,487 + MPMX20_01408 0.39 -1.7
1,472,495 - MPMX20_01408 0.39 +0.3
1,472,510 + MPMX20_01408 0.40 -2.1
1,472,518 - MPMX20_01408 0.40 -2.2
1,472,563 - MPMX20_01408 0.43 +0.3
1,472,645 + MPMX20_01408 0.47 -0.6
1,472,761 + MPMX20_01408 0.53 -0.7
1,472,817 + MPMX20_01408 0.55 +0.3
1,472,992 - MPMX20_01408 0.64 -1.3
1,472,994 + MPMX20_01408 0.64 -2.4
1,473,095 + MPMX20_01408 0.69 -1.8
1,473,095 + MPMX20_01408 0.69 -2.7
1,473,095 + MPMX20_01408 0.69 -1.9
1,473,206 + MPMX20_01408 0.75 -3.4
1,473,206 + MPMX20_01408 0.75 -1.5
1,473,209 - MPMX20_01408 0.75 +0.8
1,473,214 - MPMX20_01408 0.75 +0.1
1,473,226 + MPMX20_01408 0.76 -0.2
1,473,226 + MPMX20_01408 0.76 -1.6
1,473,226 + MPMX20_01408 0.76 -1.3
1,473,226 + MPMX20_01408 0.76 +0.4
1,473,234 - MPMX20_01408 0.76 -1.0
1,473,236 + MPMX20_01408 0.76 -4.1
1,473,307 + MPMX20_01408 0.80 -1.9
1,473,449 + MPMX20_01408 0.87 -3.1
1,473,452 - MPMX20_01408 0.87 -2.4
1,473,499 + MPMX20_01408 0.89 -1.0
1,473,507 - MPMX20_01408 0.90 -0.7
1,473,507 - MPMX20_01408 0.90 -1.0
1,473,507 - MPMX20_01408 0.90 -3.0
1,473,507 - MPMX20_01408 0.90 -1.2
1,473,507 - MPMX20_01408 0.90 -1.9
1,473,507 - MPMX20_01408 0.90 +1.9
1,473,642 - +1.3
1,473,707 - -2.7
1,473,771 - -0.7
1,473,781 + -0.1
1,473,836 - -0.6
1,473,845 + +1.3
1,473,848 + -1.0
1,473,848 + -0.3
1,473,899 - MPMX20_01409 0.10 -0.3
1,474,088 - MPMX20_01409 0.31 +1.3
1,474,178 + MPMX20_01409 0.41 +0.6
1,474,205 + MPMX20_01409 0.44 -1.7
1,474,213 - MPMX20_01409 0.45 +0.3
1,474,271 - MPMX20_01409 0.51 +1.3
1,474,271 - MPMX20_01409 0.51 -0.6
1,474,350 - MPMX20_01409 0.60 +0.0
1,474,610 + MPMX20_01409 0.89 -0.1
1,474,610 + MPMX20_01409 0.89 +2.9
1,474,610 + MPMX20_01409 0.89 -2.3
1,474,618 - MPMX20_01409 0.90 +0.0
1,474,618 - MPMX20_01409 0.90 +1.3
1,474,629 - -0.6
1,474,647 + -1.0
1,474,647 + +0.5
1,474,647 + +0.4
1,474,647 + +0.9
1,474,647 + +0.8
1,474,655 - +0.2
1,474,655 - -0.1
1,474,655 - +4.9
1,474,655 - +0.4
1,474,655 - +1.7
1,474,699 - +0.0

Or see this region's nucleotide sequence