Experiment: TSB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01250 and MPMX20_01251 are separated by 0 nucleotides MPMX20_01251 and MPMX20_01252 are separated by 47 nucleotides MPMX20_01252 and MPMX20_01253 are separated by 13 nucleotides MPMX20_01253 and MPMX20_01254 overlap by 4 nucleotides
MPMX20_01250: MPMX20_01250 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 1,314,664 to 1,315,419
_01250
MPMX20_01251: MPMX20_01251 - Proofreading thioesterase EntH, at 1,315,420 to 1,315,833
_01251
MPMX20_01252: MPMX20_01252 - Carboxypeptidase G2, at 1,315,881 to 1,316,993
_01252
MPMX20_01253: MPMX20_01253 - Inner membrane protein YjiG, at 1,317,007 to 1,317,471
_01253
MPMX20_01254: MPMX20_01254 - hypothetical protein, at 1,317,468 to 1,318,190
_01254
Position (kb)
1315
1316
1317 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1314.969 kb on - strand, within MPMX20_01250 at 1315.000 kb on - strand, within MPMX20_01250 at 1315.106 kb on - strand, within MPMX20_01250 at 1315.148 kb on + strand, within MPMX20_01250 at 1315.188 kb on - strand, within MPMX20_01250 at 1315.199 kb on - strand, within MPMX20_01250 at 1315.204 kb on - strand, within MPMX20_01250 at 1315.246 kb on + strand, within MPMX20_01250 at 1315.249 kb on - strand, within MPMX20_01250 at 1315.278 kb on + strand, within MPMX20_01250 at 1315.278 kb on + strand, within MPMX20_01250 at 1315.278 kb on + strand, within MPMX20_01250 at 1315.278 kb on + strand, within MPMX20_01250 at 1315.286 kb on - strand, within MPMX20_01250 at 1315.286 kb on - strand, within MPMX20_01250 at 1315.297 kb on - strand, within MPMX20_01250 at 1315.344 kb on - strand at 1315.344 kb on - strand at 1315.380 kb on + strand at 1315.408 kb on - strand at 1315.465 kb on + strand, within MPMX20_01251 at 1315.473 kb on - strand, within MPMX20_01251 at 1315.486 kb on + strand, within MPMX20_01251 at 1315.486 kb on + strand, within MPMX20_01251 at 1315.556 kb on + strand, within MPMX20_01251 at 1315.556 kb on + strand, within MPMX20_01251 at 1315.556 kb on + strand, within MPMX20_01251 at 1315.564 kb on - strand, within MPMX20_01251 at 1315.564 kb on - strand, within MPMX20_01251 at 1315.703 kb on + strand, within MPMX20_01251 at 1315.720 kb on + strand, within MPMX20_01251 at 1315.750 kb on + strand, within MPMX20_01251 at 1315.758 kb on - strand, within MPMX20_01251 at 1315.764 kb on + strand, within MPMX20_01251 at 1315.789 kb on + strand, within MPMX20_01251 at 1315.794 kb on + strand at 1315.797 kb on - strand at 1315.833 kb on + strand at 1315.841 kb on - strand at 1315.842 kb on + strand at 1315.843 kb on + strand at 1315.851 kb on - strand at 1315.851 kb on - strand at 1315.851 kb on - strand at 1315.867 kb on - strand at 1315.872 kb on + strand at 1315.886 kb on - strand at 1315.886 kb on - strand at 1315.918 kb on - strand at 1315.949 kb on + strand at 1315.979 kb on + strand at 1315.979 kb on + strand at 1315.979 kb on + strand at 1315.979 kb on + strand at 1315.979 kb on + strand at 1315.979 kb on + strand at 1315.979 kb on + strand at 1315.979 kb on + strand at 1315.979 kb on + strand at 1315.979 kb on + strand at 1315.987 kb on - strand at 1315.987 kb on - strand at 1315.987 kb on - strand at 1315.987 kb on - strand at 1315.987 kb on - strand at 1315.987 kb on - strand at 1315.987 kb on - strand at 1315.987 kb on - strand at 1316.014 kb on + strand, within MPMX20_01252 at 1316.017 kb on - strand, within MPMX20_01252 at 1316.164 kb on + strand, within MPMX20_01252 at 1316.312 kb on + strand, within MPMX20_01252 at 1316.312 kb on + strand, within MPMX20_01252 at 1316.320 kb on - strand, within MPMX20_01252 at 1316.320 kb on - strand, within MPMX20_01252 at 1316.320 kb on - strand, within MPMX20_01252 at 1316.385 kb on + strand, within MPMX20_01252 at 1316.442 kb on + strand, within MPMX20_01252 at 1316.484 kb on - strand, within MPMX20_01252 at 1316.499 kb on - strand, within MPMX20_01252 at 1316.541 kb on - strand, within MPMX20_01252 at 1316.572 kb on + strand, within MPMX20_01252 at 1316.610 kb on + strand, within MPMX20_01252 at 1316.610 kb on + strand, within MPMX20_01252 at 1316.617 kb on + strand, within MPMX20_01252 at 1316.676 kb on + strand, within MPMX20_01252 at 1316.676 kb on + strand, within MPMX20_01252 at 1316.676 kb on + strand, within MPMX20_01252 at 1316.676 kb on + strand, within MPMX20_01252 at 1316.676 kb on + strand, within MPMX20_01252 at 1316.690 kb on + strand, within MPMX20_01252 at 1316.713 kb on - strand, within MPMX20_01252 at 1316.786 kb on + strand, within MPMX20_01252 at 1316.831 kb on + strand, within MPMX20_01252 at 1316.856 kb on - strand, within MPMX20_01252 at 1316.929 kb on + strand at 1316.932 kb on - strand at 1316.959 kb on + strand at 1316.960 kb on - strand at 1317.020 kb on - strand at 1317.034 kb on + strand at 1317.070 kb on - strand, within MPMX20_01253 at 1317.091 kb on + strand, within MPMX20_01253 at 1317.129 kb on + strand, within MPMX20_01253 at 1317.129 kb on + strand, within MPMX20_01253 at 1317.134 kb on - strand, within MPMX20_01253 at 1317.137 kb on - strand, within MPMX20_01253 at 1317.301 kb on + strand, within MPMX20_01253 at 1317.320 kb on + strand, within MPMX20_01253 at 1317.347 kb on + strand, within MPMX20_01253 at 1317.387 kb on - strand, within MPMX20_01253 at 1317.403 kb on + strand, within MPMX20_01253 at 1317.457 kb on - strand at 1317.475 kb on - strand at 1317.569 kb on + strand, within MPMX20_01254 at 1317.595 kb on - strand, within MPMX20_01254 at 1317.632 kb on + strand, within MPMX20_01254 at 1317.632 kb on + strand, within MPMX20_01254 at 1317.632 kb on + strand, within MPMX20_01254 at 1317.632 kb on + strand, within MPMX20_01254 at 1317.632 kb on + strand, within MPMX20_01254 at 1317.640 kb on - strand, within MPMX20_01254 at 1317.640 kb on - strand, within MPMX20_01254 at 1317.641 kb on + strand, within MPMX20_01254 at 1317.642 kb on + strand, within MPMX20_01254 at 1317.697 kb on - strand, within MPMX20_01254 at 1317.746 kb on + strand, within MPMX20_01254 at 1317.754 kb on - strand, within MPMX20_01254 at 1317.754 kb on - strand, within MPMX20_01254 at 1317.777 kb on + strand, within MPMX20_01254 at 1317.872 kb on + strand, within MPMX20_01254 at 1317.873 kb on - strand, within MPMX20_01254 at 1317.885 kb on - strand, within MPMX20_01254 at 1317.902 kb on + strand, within MPMX20_01254 at 1317.915 kb on + strand, within MPMX20_01254
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 1,314,969 - MPMX20_01250 0.40 -1.7 1,315,000 - MPMX20_01250 0.44 +0.1 1,315,106 - MPMX20_01250 0.58 -0.7 1,315,148 + MPMX20_01250 0.64 +0.3 1,315,188 - MPMX20_01250 0.69 +1.4 1,315,199 - MPMX20_01250 0.71 -0.3 1,315,204 - MPMX20_01250 0.71 -0.3 1,315,246 + MPMX20_01250 0.77 -1.2 1,315,249 - MPMX20_01250 0.77 -0.6 1,315,278 + MPMX20_01250 0.81 +1.0 1,315,278 + MPMX20_01250 0.81 -0.0 1,315,278 + MPMX20_01250 0.81 -1.5 1,315,278 + MPMX20_01250 0.81 -0.5 1,315,286 - MPMX20_01250 0.82 -0.4 1,315,286 - MPMX20_01250 0.82 +0.0 1,315,297 - MPMX20_01250 0.84 -0.5 1,315,344 - +0.4 1,315,344 - +1.7 1,315,380 + +1.5 1,315,408 - +2.0 1,315,465 + MPMX20_01251 0.11 +0.2 1,315,473 - MPMX20_01251 0.13 -0.5 1,315,486 + MPMX20_01251 0.16 -1.6 1,315,486 + MPMX20_01251 0.16 -1.2 1,315,556 + MPMX20_01251 0.33 -1.2 1,315,556 + MPMX20_01251 0.33 +0.8 1,315,556 + MPMX20_01251 0.33 -0.8 1,315,564 - MPMX20_01251 0.35 +0.4 1,315,564 - MPMX20_01251 0.35 -1.5 1,315,703 + MPMX20_01251 0.68 -0.8 1,315,720 + MPMX20_01251 0.72 -0.9 1,315,750 + MPMX20_01251 0.80 +0.8 1,315,758 - MPMX20_01251 0.82 -1.2 1,315,764 + MPMX20_01251 0.83 -2.7 1,315,789 + MPMX20_01251 0.89 +0.6 1,315,794 + +0.8 1,315,797 - +2.0 1,315,833 + -0.4 1,315,841 - -0.0 1,315,842 + -1.0 1,315,843 + -0.8 1,315,851 - -0.5 1,315,851 - +0.2 1,315,851 - +0.1 1,315,867 - +0.5 1,315,872 + +2.0 1,315,886 - +1.9 1,315,886 - +0.4 1,315,918 - -0.2 1,315,949 + +0.2 1,315,979 + -0.1 1,315,979 + -0.3 1,315,979 + -0.8 1,315,979 + +4.2 1,315,979 + -0.6 1,315,979 + -1.8 1,315,979 + -1.0 1,315,979 + -0.3 1,315,979 + -0.5 1,315,979 + +3.4 1,315,987 - +0.9 1,315,987 - +0.1 1,315,987 - +0.4 1,315,987 - -0.0 1,315,987 - -0.3 1,315,987 - -0.4 1,315,987 - +0.8 1,315,987 - -1.6 1,316,014 + MPMX20_01252 0.12 +1.0 1,316,017 - MPMX20_01252 0.12 -0.0 1,316,164 + MPMX20_01252 0.25 +1.3 1,316,312 + MPMX20_01252 0.39 -0.3 1,316,312 + MPMX20_01252 0.39 +0.7 1,316,320 - MPMX20_01252 0.39 +0.1 1,316,320 - MPMX20_01252 0.39 -0.7 1,316,320 - MPMX20_01252 0.39 +2.0 1,316,385 + MPMX20_01252 0.45 -1.5 1,316,442 + MPMX20_01252 0.50 +0.4 1,316,484 - MPMX20_01252 0.54 -0.0 1,316,499 - MPMX20_01252 0.56 -0.7 1,316,541 - MPMX20_01252 0.59 +2.6 1,316,572 + MPMX20_01252 0.62 -1.1 1,316,610 + MPMX20_01252 0.65 -0.6 1,316,610 + MPMX20_01252 0.65 +2.0 1,316,617 + MPMX20_01252 0.66 -1.3 1,316,676 + MPMX20_01252 0.71 -0.7 1,316,676 + MPMX20_01252 0.71 -0.3 1,316,676 + MPMX20_01252 0.71 +0.2 1,316,676 + MPMX20_01252 0.71 +0.9 1,316,676 + MPMX20_01252 0.71 +0.5 1,316,690 + MPMX20_01252 0.73 +2.6 1,316,713 - MPMX20_01252 0.75 -0.3 1,316,786 + MPMX20_01252 0.81 +1.6 1,316,831 + MPMX20_01252 0.85 +0.7 1,316,856 - MPMX20_01252 0.88 +0.2 1,316,929 + -1.7 1,316,932 - +2.0 1,316,959 + -0.6 1,316,960 - -0.8 1,317,020 - +1.0 1,317,034 + -0.1 1,317,070 - MPMX20_01253 0.14 +2.4 1,317,091 + MPMX20_01253 0.18 +0.4 1,317,129 + MPMX20_01253 0.26 -1.0 1,317,129 + MPMX20_01253 0.26 -0.1 1,317,134 - MPMX20_01253 0.27 -1.8 1,317,137 - MPMX20_01253 0.28 +1.0 1,317,301 + MPMX20_01253 0.63 +0.3 1,317,320 + MPMX20_01253 0.67 +0.4 1,317,347 + MPMX20_01253 0.73 +0.2 1,317,387 - MPMX20_01253 0.82 +1.3 1,317,403 + MPMX20_01253 0.85 -0.0 1,317,457 - +0.4 1,317,475 - -0.8 1,317,569 + MPMX20_01254 0.14 +0.2 1,317,595 - MPMX20_01254 0.18 -0.2 1,317,632 + MPMX20_01254 0.23 -0.4 1,317,632 + MPMX20_01254 0.23 -0.9 1,317,632 + MPMX20_01254 0.23 +0.4 1,317,632 + MPMX20_01254 0.23 +0.7 1,317,632 + MPMX20_01254 0.23 -1.0 1,317,640 - MPMX20_01254 0.24 -0.5 1,317,640 - MPMX20_01254 0.24 -0.3 1,317,641 + MPMX20_01254 0.24 -1.6 1,317,642 + MPMX20_01254 0.24 +0.6 1,317,697 - MPMX20_01254 0.32 +3.1 1,317,746 + MPMX20_01254 0.38 -0.1 1,317,754 - MPMX20_01254 0.40 -1.5 1,317,754 - MPMX20_01254 0.40 +0.3 1,317,777 + MPMX20_01254 0.43 -0.3 1,317,872 + MPMX20_01254 0.56 +0.7 1,317,873 - MPMX20_01254 0.56 +0.2 1,317,885 - MPMX20_01254 0.58 +1.0 1,317,902 + MPMX20_01254 0.60 +0.1 1,317,915 + MPMX20_01254 0.62 -1.5
Or see this region's nucleotide sequence