Experiment: TSB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_00062 and MPMX20_00063 are separated by 108 nucleotides MPMX20_00063 and MPMX20_00064 are separated by 43 nucleotides MPMX20_00064 and MPMX20_00065 are separated by 2 nucleotides
MPMX20_00062: MPMX20_00062 - Multidrug resistance protein 3, at 62,571 to 64,073
_00062
MPMX20_00063: MPMX20_00063 - Lipoprotein 28, at 64,182 to 64,982
_00063
MPMX20_00064: MPMX20_00064 - hypothetical protein, at 65,026 to 66,054
_00064
MPMX20_00065: MPMX20_00065 - Purine ribonucleoside efflux pump NepI, at 66,057 to 67,253
_00065
Position (kb) 65
66
67 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.035 kb on + strand at 64.043 kb on - strand at 64.043 kb on - strand at 64.050 kb on + strand at 64.050 kb on + strand at 64.055 kb on + strand at 64.058 kb on - strand at 64.058 kb on - strand at 64.060 kb on + strand at 64.063 kb on - strand at 64.068 kb on - strand at 64.073 kb on - strand at 64.073 kb on - strand at 64.084 kb on + strand at 64.092 kb on - strand at 64.129 kb on + strand at 64.129 kb on + strand at 64.129 kb on + strand at 64.137 kb on - strand at 64.137 kb on - strand at 64.137 kb on - strand at 64.138 kb on - strand at 64.180 kb on - strand at 64.180 kb on - strand at 64.260 kb on - strand at 64.285 kb on + strand, within MPMX20_00063 at 64.285 kb on + strand, within MPMX20_00063 at 64.285 kb on - strand, within MPMX20_00063 at 64.290 kb on + strand, within MPMX20_00063 at 64.290 kb on + strand, within MPMX20_00063 at 64.290 kb on + strand, within MPMX20_00063 at 64.290 kb on + strand, within MPMX20_00063 at 64.290 kb on + strand, within MPMX20_00063 at 64.290 kb on + strand, within MPMX20_00063 at 64.298 kb on - strand, within MPMX20_00063 at 64.298 kb on - strand, within MPMX20_00063 at 64.300 kb on - strand, within MPMX20_00063 at 64.359 kb on + strand, within MPMX20_00063 at 64.386 kb on + strand, within MPMX20_00063 at 64.400 kb on + strand, within MPMX20_00063 at 64.400 kb on + strand, within MPMX20_00063 at 64.454 kb on - strand, within MPMX20_00063 at 64.483 kb on - strand, within MPMX20_00063 at 64.547 kb on + strand, within MPMX20_00063 at 64.547 kb on + strand, within MPMX20_00063 at 64.597 kb on + strand, within MPMX20_00063 at 64.641 kb on - strand, within MPMX20_00063 at 64.645 kb on + strand, within MPMX20_00063 at 64.806 kb on + strand, within MPMX20_00063 at 64.814 kb on - strand, within MPMX20_00063 at 64.814 kb on - strand, within MPMX20_00063 at 64.838 kb on - strand, within MPMX20_00063 at 64.853 kb on - strand, within MPMX20_00063 at 64.952 kb on + strand at 64.952 kb on + strand at 64.960 kb on - strand at 64.968 kb on + strand at 64.968 kb on + strand at 64.974 kb on + strand at 64.986 kb on + strand at 64.989 kb on - strand at 64.989 kb on - strand at 64.994 kb on + strand at 64.994 kb on + strand at 64.994 kb on - strand at 64.994 kb on - strand at 65.002 kb on - strand at 65.002 kb on - strand at 65.008 kb on + strand at 65.017 kb on - strand at 65.039 kb on + strand at 65.071 kb on + strand at 65.071 kb on + strand at 65.079 kb on - strand at 65.094 kb on + strand at 65.102 kb on - strand at 65.120 kb on + strand at 65.128 kb on - strand at 65.162 kb on + strand, within MPMX20_00064 at 65.244 kb on + strand, within MPMX20_00064 at 65.275 kb on + strand, within MPMX20_00064 at 65.386 kb on - strand, within MPMX20_00064 at 65.407 kb on + strand, within MPMX20_00064 at 65.426 kb on + strand, within MPMX20_00064 at 65.426 kb on + strand, within MPMX20_00064 at 65.434 kb on - strand, within MPMX20_00064 at 65.479 kb on + strand, within MPMX20_00064 at 65.479 kb on - strand, within MPMX20_00064 at 65.479 kb on - strand, within MPMX20_00064 at 65.479 kb on - strand, within MPMX20_00064 at 65.481 kb on + strand, within MPMX20_00064 at 65.481 kb on + strand, within MPMX20_00064 at 65.489 kb on - strand, within MPMX20_00064 at 65.489 kb on - strand, within MPMX20_00064 at 65.499 kb on + strand, within MPMX20_00064 at 65.500 kb on + strand, within MPMX20_00064 at 65.507 kb on - strand, within MPMX20_00064 at 65.642 kb on + strand, within MPMX20_00064 at 65.665 kb on + strand, within MPMX20_00064 at 65.665 kb on + strand, within MPMX20_00064 at 65.673 kb on - strand, within MPMX20_00064 at 65.673 kb on - strand, within MPMX20_00064 at 65.707 kb on + strand, within MPMX20_00064 at 65.707 kb on + strand, within MPMX20_00064 at 65.707 kb on + strand, within MPMX20_00064 at 65.715 kb on - strand, within MPMX20_00064 at 65.715 kb on - strand, within MPMX20_00064 at 65.715 kb on - strand, within MPMX20_00064 at 65.715 kb on - strand, within MPMX20_00064 at 65.771 kb on - strand, within MPMX20_00064 at 65.773 kb on + strand, within MPMX20_00064 at 65.781 kb on - strand, within MPMX20_00064 at 65.781 kb on - strand, within MPMX20_00064 at 65.880 kb on + strand, within MPMX20_00064 at 65.880 kb on + strand, within MPMX20_00064 at 65.888 kb on - strand, within MPMX20_00064 at 65.936 kb on + strand, within MPMX20_00064 at 65.944 kb on - strand, within MPMX20_00064 at 65.944 kb on - strand, within MPMX20_00064 at 65.944 kb on - strand, within MPMX20_00064 at 65.946 kb on + strand, within MPMX20_00064 at 65.946 kb on + strand, within MPMX20_00064 at 66.040 kb on + strand at 66.063 kb on + strand at 66.063 kb on + strand at 66.071 kb on - strand at 66.079 kb on - strand at 66.081 kb on - strand at 66.097 kb on - strand at 66.112 kb on + strand at 66.112 kb on + strand at 66.120 kb on - strand at 66.127 kb on - strand at 66.130 kb on - strand at 66.134 kb on + strand at 66.142 kb on - strand at 66.142 kb on - strand at 66.168 kb on + strand at 66.176 kb on - strand at 66.182 kb on + strand, within MPMX20_00065 at 66.182 kb on + strand, within MPMX20_00065 at 66.189 kb on + strand, within MPMX20_00065 at 66.190 kb on - strand, within MPMX20_00065 at 66.190 kb on - strand, within MPMX20_00065 at 66.207 kb on - strand, within MPMX20_00065 at 66.207 kb on - strand, within MPMX20_00065 at 66.207 kb on - strand, within MPMX20_00065 at 66.207 kb on - strand, within MPMX20_00065 at 66.212 kb on - strand, within MPMX20_00065 at 66.334 kb on - strand, within MPMX20_00065 at 66.352 kb on - strand, within MPMX20_00065 at 66.436 kb on - strand, within MPMX20_00065 at 66.449 kb on - strand, within MPMX20_00065 at 66.490 kb on + strand, within MPMX20_00065 at 66.523 kb on + strand, within MPMX20_00065 at 66.544 kb on + strand, within MPMX20_00065 at 66.546 kb on + strand, within MPMX20_00065 at 66.554 kb on - strand, within MPMX20_00065 at 66.613 kb on + strand, within MPMX20_00065 at 66.621 kb on - strand, within MPMX20_00065 at 66.621 kb on - strand, within MPMX20_00065 at 66.623 kb on + strand, within MPMX20_00065 at 66.666 kb on + strand, within MPMX20_00065 at 66.674 kb on - strand, within MPMX20_00065 at 66.674 kb on - strand, within MPMX20_00065 at 66.683 kb on + strand, within MPMX20_00065 at 66.724 kb on - strand, within MPMX20_00065 at 66.726 kb on + strand, within MPMX20_00065 at 66.734 kb on - strand, within MPMX20_00065 at 66.829 kb on + strand, within MPMX20_00065 at 66.837 kb on - strand, within MPMX20_00065 at 66.925 kb on + strand, within MPMX20_00065 at 66.939 kb on + strand, within MPMX20_00065 at 66.942 kb on - strand, within MPMX20_00065 at 66.947 kb on - strand, within MPMX20_00065 at 66.947 kb on - strand, within MPMX20_00065 at 66.952 kb on + strand, within MPMX20_00065 at 66.960 kb on - strand, within MPMX20_00065 at 67.003 kb on + strand, within MPMX20_00065
Per-strain Table
Position Strand Gene LocusTag Fraction TSB plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 64,035 + -1.3 64,035 + -1.0 64,035 + +0.3 64,035 + -1.0 64,043 - -0.1 64,043 - -0.3 64,050 + -1.2 64,050 + +0.6 64,055 + +0.5 64,058 - -0.1 64,058 - +0.7 64,060 + -0.2 64,063 - -0.9 64,068 - -0.1 64,073 - -1.7 64,073 - -0.7 64,084 + -0.7 64,092 - -1.0 64,129 + -0.7 64,129 + -0.5 64,129 + -0.1 64,137 - +0.3 64,137 - -0.9 64,137 - +0.3 64,138 - +0.9 64,180 - +0.7 64,180 - -0.9 64,260 - -2.6 64,285 + MPMX20_00063 0.13 -1.8 64,285 + MPMX20_00063 0.13 -0.4 64,285 - MPMX20_00063 0.13 +1.4 64,290 + MPMX20_00063 0.13 +2.4 64,290 + MPMX20_00063 0.13 -0.1 64,290 + MPMX20_00063 0.13 +0.5 64,290 + MPMX20_00063 0.13 -1.9 64,290 + MPMX20_00063 0.13 -2.5 64,290 + MPMX20_00063 0.13 +2.9 64,298 - MPMX20_00063 0.14 +0.2 64,298 - MPMX20_00063 0.14 +0.5 64,300 - MPMX20_00063 0.15 +0.6 64,359 + MPMX20_00063 0.22 -1.9 64,386 + MPMX20_00063 0.25 -0.6 64,400 + MPMX20_00063 0.27 -1.7 64,400 + MPMX20_00063 0.27 +0.0 64,454 - MPMX20_00063 0.34 +0.9 64,483 - MPMX20_00063 0.38 -1.8 64,547 + MPMX20_00063 0.46 +0.4 64,547 + MPMX20_00063 0.46 -1.0 64,597 + MPMX20_00063 0.52 +0.2 64,641 - MPMX20_00063 0.57 +1.4 64,645 + MPMX20_00063 0.58 -0.0 64,806 + MPMX20_00063 0.78 +1.9 64,814 - MPMX20_00063 0.79 +0.1 64,814 - MPMX20_00063 0.79 -2.4 64,838 - MPMX20_00063 0.82 -0.4 64,853 - MPMX20_00063 0.84 -0.9 64,952 + -0.5 64,952 + -0.9 64,960 - -1.2 64,968 + -0.5 64,968 + -0.6 64,974 + -0.4 64,986 + -0.8 64,989 - +1.9 64,989 - +2.9 64,994 + -0.6 64,994 + +1.7 64,994 - +0.3 64,994 - -0.7 65,002 - +0.3 65,002 - -0.1 65,008 + -1.1 65,017 - -1.3 65,039 + +2.3 65,071 + -0.6 65,071 + -1.5 65,079 - +1.1 65,094 + +0.3 65,102 - -0.1 65,120 + +0.4 65,128 - -0.1 65,162 + MPMX20_00064 0.13 +0.6 65,244 + MPMX20_00064 0.21 +1.6 65,275 + MPMX20_00064 0.24 +0.9 65,386 - MPMX20_00064 0.35 +1.5 65,407 + MPMX20_00064 0.37 +0.3 65,426 + MPMX20_00064 0.39 +1.1 65,426 + MPMX20_00064 0.39 -0.1 65,434 - MPMX20_00064 0.40 +1.9 65,479 + MPMX20_00064 0.44 +0.1 65,479 - MPMX20_00064 0.44 -0.1 65,479 - MPMX20_00064 0.44 +0.3 65,479 - MPMX20_00064 0.44 +3.2 65,481 + MPMX20_00064 0.44 +0.3 65,481 + MPMX20_00064 0.44 -1.1 65,489 - MPMX20_00064 0.45 +1.4 65,489 - MPMX20_00064 0.45 +0.6 65,499 + MPMX20_00064 0.46 -0.9 65,500 + MPMX20_00064 0.46 -0.9 65,507 - MPMX20_00064 0.47 +1.9 65,642 + MPMX20_00064 0.60 -0.9 65,665 + MPMX20_00064 0.62 +2.9 65,665 + MPMX20_00064 0.62 -1.2 65,673 - MPMX20_00064 0.63 +0.9 65,673 - MPMX20_00064 0.63 +1.4 65,707 + MPMX20_00064 0.66 +0.5 65,707 + MPMX20_00064 0.66 +0.5 65,707 + MPMX20_00064 0.66 +3.3 65,715 - MPMX20_00064 0.67 -0.7 65,715 - MPMX20_00064 0.67 -0.4 65,715 - MPMX20_00064 0.67 -1.1 65,715 - MPMX20_00064 0.67 -0.1 65,771 - MPMX20_00064 0.72 -0.1 65,773 + MPMX20_00064 0.73 +0.2 65,781 - MPMX20_00064 0.73 +0.1 65,781 - MPMX20_00064 0.73 -0.1 65,880 + MPMX20_00064 0.83 -0.5 65,880 + MPMX20_00064 0.83 +0.4 65,888 - MPMX20_00064 0.84 -0.9 65,936 + MPMX20_00064 0.88 -0.9 65,944 - MPMX20_00064 0.89 +3.4 65,944 - MPMX20_00064 0.89 +0.9 65,944 - MPMX20_00064 0.89 -1.8 65,946 + MPMX20_00064 0.89 -0.5 65,946 + MPMX20_00064 0.89 +0.1 66,040 + -0.0 66,063 + -0.2 66,063 + +1.1 66,071 - +0.7 66,079 - +1.9 66,081 - -0.5 66,097 - -0.9 66,112 + -0.8 66,112 + -1.0 66,120 - -1.3 66,127 - -0.1 66,130 - -1.0 66,134 + +1.9 66,142 - -0.7 66,142 - -0.7 66,168 + -0.4 66,176 - +1.1 66,182 + MPMX20_00065 0.10 -0.5 66,182 + MPMX20_00065 0.10 +0.7 66,189 + MPMX20_00065 0.11 -0.4 66,190 - MPMX20_00065 0.11 +0.7 66,190 - MPMX20_00065 0.11 +0.1 66,207 - MPMX20_00065 0.13 +0.3 66,207 - MPMX20_00065 0.13 -0.7 66,207 - MPMX20_00065 0.13 +0.4 66,207 - MPMX20_00065 0.13 -0.0 66,212 - MPMX20_00065 0.13 -1.1 66,334 - MPMX20_00065 0.23 -0.8 66,352 - MPMX20_00065 0.25 -0.8 66,436 - MPMX20_00065 0.32 +1.3 66,449 - MPMX20_00065 0.33 +4.4 66,490 + MPMX20_00065 0.36 -1.2 66,523 + MPMX20_00065 0.39 -0.7 66,544 + MPMX20_00065 0.41 -1.6 66,546 + MPMX20_00065 0.41 +0.3 66,554 - MPMX20_00065 0.42 +0.1 66,613 + MPMX20_00065 0.46 -1.6 66,621 - MPMX20_00065 0.47 -1.2 66,621 - MPMX20_00065 0.47 -0.7 66,623 + MPMX20_00065 0.47 -0.8 66,666 + MPMX20_00065 0.51 -2.3 66,674 - MPMX20_00065 0.52 -0.1 66,674 - MPMX20_00065 0.52 -1.5 66,683 + MPMX20_00065 0.52 -0.1 66,724 - MPMX20_00065 0.56 +0.5 66,726 + MPMX20_00065 0.56 +0.2 66,734 - MPMX20_00065 0.57 -1.3 66,829 + MPMX20_00065 0.64 +0.9 66,837 - MPMX20_00065 0.65 +0.1 66,925 + MPMX20_00065 0.73 +0.9 66,939 + MPMX20_00065 0.74 -0.3 66,942 - MPMX20_00065 0.74 -0.4 66,947 - MPMX20_00065 0.74 -2.1 66,947 - MPMX20_00065 0.74 -0.5 66,952 + MPMX20_00065 0.75 -0.9 66,960 - MPMX20_00065 0.75 -0.7 67,003 + MPMX20_00065 0.79 -0.1
Or see this region's nucleotide sequence