Experiment: M9 plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_04341 and MPMX20_04342 are separated by 127 nucleotides MPMX20_04342 and MPMX20_04343 overlap by 17 nucleotides MPMX20_04343 and MPMX20_04344 are separated by 47 nucleotides MPMX20_04344 and MPMX20_04345 are separated by 129 nucleotides
MPMX20_04341: MPMX20_04341 - Signal recognition particle receptor FtsY, at 4,535,951 to 4,537,417
_04341
MPMX20_04342: MPMX20_04342 - Ribosomal RNA small subunit methyltransferase D, at 4,537,545 to 4,538,147
_04342
MPMX20_04343: MPMX20_04343 - hypothetical protein, at 4,538,131 to 4,538,412
_04343
MPMX20_04344: MPMX20_04344 - hypothetical protein, at 4,538,460 to 4,538,819
_04344
MPMX20_04345: MPMX20_04345 - hypothetical protein, at 4,538,949 to 4,539,575
_04345
Position (kb)
4538
4539 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4537.483 kb on - strand at 4537.483 kb on - strand at 4537.562 kb on - strand at 4537.570 kb on - strand at 4537.630 kb on + strand, within MPMX20_04342 at 4537.630 kb on + strand, within MPMX20_04342 at 4537.631 kb on + strand, within MPMX20_04342 at 4537.638 kb on - strand, within MPMX20_04342 at 4537.638 kb on - strand, within MPMX20_04342 at 4537.638 kb on - strand, within MPMX20_04342 at 4537.638 kb on - strand, within MPMX20_04342 at 4537.638 kb on - strand, within MPMX20_04342 at 4537.638 kb on - strand, within MPMX20_04342 at 4537.647 kb on + strand, within MPMX20_04342 at 4537.647 kb on + strand, within MPMX20_04342 at 4537.695 kb on - strand, within MPMX20_04342 at 4537.698 kb on - strand, within MPMX20_04342 at 4537.720 kb on + strand, within MPMX20_04342 at 4537.720 kb on + strand, within MPMX20_04342 at 4537.744 kb on + strand, within MPMX20_04342 at 4537.744 kb on + strand, within MPMX20_04342 at 4537.801 kb on + strand, within MPMX20_04342 at 4537.804 kb on - strand, within MPMX20_04342 at 4537.806 kb on + strand, within MPMX20_04342 at 4537.885 kb on - strand, within MPMX20_04342 at 4537.944 kb on - strand, within MPMX20_04342 at 4538.022 kb on + strand, within MPMX20_04342 at 4538.058 kb on + strand, within MPMX20_04342 at 4538.058 kb on + strand, within MPMX20_04342 at 4538.058 kb on + strand, within MPMX20_04342 at 4538.066 kb on - strand, within MPMX20_04342 at 4538.122 kb on - strand at 4538.198 kb on - strand, within MPMX20_04343 at 4538.229 kb on - strand, within MPMX20_04343 at 4538.242 kb on + strand, within MPMX20_04343 at 4538.242 kb on + strand, within MPMX20_04343 at 4538.250 kb on - strand, within MPMX20_04343 at 4538.250 kb on - strand, within MPMX20_04343 at 4538.301 kb on + strand, within MPMX20_04343 at 4538.301 kb on + strand, within MPMX20_04343 at 4538.376 kb on - strand, within MPMX20_04343 at 4538.378 kb on - strand, within MPMX20_04343 at 4538.423 kb on + strand at 4538.429 kb on + strand at 4538.478 kb on - strand at 4538.478 kb on - strand at 4538.596 kb on - strand, within MPMX20_04344 at 4538.663 kb on + strand, within MPMX20_04344 at 4538.690 kb on - strand, within MPMX20_04344 at 4538.901 kb on - strand at 4538.941 kb on - strand at 4538.987 kb on + strand at 4538.987 kb on + strand at 4538.995 kb on - strand at 4538.995 kb on - strand at 4538.995 kb on - strand at 4538.995 kb on - strand at 4538.995 kb on - strand at 4538.995 kb on - strand at 4538.995 kb on - strand at 4538.995 kb on - strand at 4538.995 kb on - strand at 4538.997 kb on + strand at 4539.084 kb on + strand, within MPMX20_04345 at 4539.089 kb on + strand, within MPMX20_04345 at 4539.123 kb on + strand, within MPMX20_04345 at 4539.125 kb on + strand, within MPMX20_04345 at 4539.147 kb on + strand, within MPMX20_04345 at 4539.148 kb on + strand, within MPMX20_04345 at 4539.148 kb on + strand, within MPMX20_04345 at 4539.156 kb on - strand, within MPMX20_04345 at 4539.156 kb on - strand, within MPMX20_04345 at 4539.156 kb on - strand, within MPMX20_04345 at 4539.176 kb on + strand, within MPMX20_04345 at 4539.184 kb on - strand, within MPMX20_04345 at 4539.220 kb on - strand, within MPMX20_04345 at 4539.281 kb on + strand, within MPMX20_04345 at 4539.304 kb on - strand, within MPMX20_04345
Per-strain Table
Position Strand Gene LocusTag Fraction M9 plate, Mixed culture; Streptomyces sp. SAI_133 1:1 starding OD to Enterobacter_TBS_079_ML3; Collection-direct remove 4,537,483 - -1.3 4,537,483 - +0.1 4,537,562 - -1.1 4,537,570 - -0.2 4,537,630 + MPMX20_04342 0.14 -0.1 4,537,630 + MPMX20_04342 0.14 +1.3 4,537,631 + MPMX20_04342 0.14 -1.3 4,537,638 - MPMX20_04342 0.15 +0.5 4,537,638 - MPMX20_04342 0.15 -1.0 4,537,638 - MPMX20_04342 0.15 -0.6 4,537,638 - MPMX20_04342 0.15 -2.0 4,537,638 - MPMX20_04342 0.15 -0.3 4,537,638 - MPMX20_04342 0.15 +0.3 4,537,647 + MPMX20_04342 0.17 -0.3 4,537,647 + MPMX20_04342 0.17 +0.7 4,537,695 - MPMX20_04342 0.25 +0.7 4,537,698 - MPMX20_04342 0.25 +1.4 4,537,720 + MPMX20_04342 0.29 +1.3 4,537,720 + MPMX20_04342 0.29 -1.3 4,537,744 + MPMX20_04342 0.33 -1.0 4,537,744 + MPMX20_04342 0.33 -2.5 4,537,801 + MPMX20_04342 0.42 -1.2 4,537,804 - MPMX20_04342 0.43 -0.9 4,537,806 + MPMX20_04342 0.43 +0.3 4,537,885 - MPMX20_04342 0.56 -0.1 4,537,944 - MPMX20_04342 0.66 -0.8 4,538,022 + MPMX20_04342 0.79 -0.7 4,538,058 + MPMX20_04342 0.85 +0.3 4,538,058 + MPMX20_04342 0.85 +1.4 4,538,058 + MPMX20_04342 0.85 -1.7 4,538,066 - MPMX20_04342 0.86 +0.7 4,538,122 - +1.0 4,538,198 - MPMX20_04343 0.24 -0.2 4,538,229 - MPMX20_04343 0.35 +0.3 4,538,242 + MPMX20_04343 0.39 +1.5 4,538,242 + MPMX20_04343 0.39 +0.3 4,538,250 - MPMX20_04343 0.42 +0.7 4,538,250 - MPMX20_04343 0.42 +1.5 4,538,301 + MPMX20_04343 0.60 +1.7 4,538,301 + MPMX20_04343 0.60 +1.0 4,538,376 - MPMX20_04343 0.87 +0.3 4,538,378 - MPMX20_04343 0.88 -1.0 4,538,423 + -0.8 4,538,429 + +0.9 4,538,478 - +1.3 4,538,478 - +2.1 4,538,596 - MPMX20_04344 0.38 +2.4 4,538,663 + MPMX20_04344 0.56 +1.0 4,538,690 - MPMX20_04344 0.64 +3.1 4,538,901 - +3.5 4,538,941 - +1.0 4,538,987 + -1.8 4,538,987 + +1.7 4,538,995 - -0.6 4,538,995 - -2.1 4,538,995 - +0.1 4,538,995 - +0.3 4,538,995 - -1.3 4,538,995 - +0.3 4,538,995 - +0.6 4,538,995 - +1.3 4,538,995 - -1.9 4,538,997 + +0.9 4,539,084 + MPMX20_04345 0.22 -1.6 4,539,089 + MPMX20_04345 0.22 -0.6 4,539,123 + MPMX20_04345 0.28 -0.7 4,539,125 + MPMX20_04345 0.28 -0.9 4,539,147 + MPMX20_04345 0.32 +0.7 4,539,148 + MPMX20_04345 0.32 -1.7 4,539,148 + MPMX20_04345 0.32 +0.7 4,539,156 - MPMX20_04345 0.33 -2.0 4,539,156 - MPMX20_04345 0.33 -0.3 4,539,156 - MPMX20_04345 0.33 -1.7 4,539,176 + MPMX20_04345 0.36 +0.5 4,539,184 - MPMX20_04345 0.37 -1.4 4,539,220 - MPMX20_04345 0.43 -2.2 4,539,281 + MPMX20_04345 0.53 -0.1 4,539,304 - MPMX20_04345 0.57 +0.4
Or see this region's nucleotide sequence